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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1182
Library FC-IC
(Link to library)
Clone ID FC-IC1182
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U07877-1
Original site URL
Representative seq. ID FC-IC1182P
(Link to Original site)
Representative DNA sequence 
>FC-IC1182 (FC-IC1182Q) /CSM/FC-IC/FC-IC1182Q.Seq.d/
ACAATTAAAGATGAATTTAAAAAAGCAGCCGTTGTAATTCCAGATAATGGTGCAGAAGAA
ATTGTTGATCCATGGGTTCGTTTCATTGGAAATGAAGGAGATCCAAACAATGTTAGAACC
TATACCTTTATGGCATATAATTTAACCAATCCAATTGAAACCATGCAAGGTCATTTACCA
AAATATCAAGAAGTTGGTCCATACAGTTACAATTACATCTATGAACGTATCAATGCAAAC
CTCTATGAAGATGATGAAAAATTAAGTTTCAAACTTTGGAAACGTTATTTCCCAATTGTT
GCTGATGGTTATAGAGATCCAACCAAAGATACTATCTATCATTTCAATTTAGTATATGGT
GCTGCCGTTAAACAAGCAGGTAGTGAAGTTGCACTTTCAGTAGCTTTAACAGCAGCTGCA
ATGGGTAAAATTATCACTGGTCTCACTGACCCAAGCTTTAAAGTTAAAGCTGGTTTCGCT
GCTGCACCAACAGTTACTGCTGGAGCTTTTTCAAATCTTTTAACTGCAGCTGGTAATGAC
CCAGCTACTGCATGTGGACTTTGGCAAACTAGTXXXXXXXXXXACAATTAAAGATGAATT
TAAAAAAGCAGCCGTTGTAATTCCAGATAATGGTGCAGAAGAAATTGTTGATCCATGGGT
TCGTTTCATTGGAAATGAAGGAGATCCAAACAATGTTAGAACCTATACCTTTATGGCATA
TAATTTAACCAATCCAATTGAAACCATGCAAGGTCATTTACCAAAATATCAAGAAGTTGG
TCCATACAGTTACAATTACATCTATGAACGTATCAATGCAAACCTCTATGAAGATGATGA
AAAATTAAGTTTCAAACTTTGGAAACGTTATTTCCCAATTGTTGCTGATGGTTATAGAGA
TCCAACCAAAGATACTATCTATCATTTCAATTTAGTATATGGTGCTGCCGTTAAACAAGC
AGGTAGTGAAGTTGCACTTTCAGTAGCTTTAACAGCAGCTGCAATGGGTAAAATTATCAC
TGGTCTCACTGACCCAAGCTTTAAAGTTAAAGCTGGTTTCGCTGCTGCACCAACAGTTAC
TGCTGGAGCTTTTTCAAATCTTTTAACTGCAGCTGGTAATGACCCAGCTACTGCATGTGG
ACTTTGGCAAACTAGT
sequence update 2001.11.23
Translated Amino Acid sequence 
TIKDEFKKAAVVIPDNGAEEIVDPWVRFIGNEGDPNNVRTYTFMAYNLTNPIETMQGHLP
KYQEVGPYSYNYIYERINANLYEDDEKLSFKLWKRYFPIVADGYRDPTKDTIYHFNLVYG
AAVKQAGSEVALSVALTAAAMGKIITGLTDPSFKVKAGFAAAPTVTAGAFSNLLTAAGND
PATACGLWQTS---

---TIKDEFKKAAVVIPDNGAEEIVDPWVRFIGNEGDPNNVRTYTFMAYNLTNPIETMQG
HLPKYQEVGPYSYNYIYERINANLYEDDEKLSFKLWKRYFPIVADGYRDPTKDTIYHFNL
VYGAAVKQAGSEVALSVALTAAAMGKIITGLTDPSFKVKAGFAAAPTVTAGAFSNLLTAA
GNDPATACGLWQTS
Translated Amino Acid sequence (All Frames) 
Frame A:
TIKDEFKKAAVVIPDNGAEEIVDPWVRFIGNEGDPNNVRTYTFMAYNLTNPIETMQGHLP
KYQEVGPYSYNYIYERINANLYEDDEKLSFKLWKRYFPIVADGYRDPTKDTIYHFNLVYG
AAVKQAGSEVALSVALTAAAMGKIITGLTDPSFKVKAGFAAAPTVTAGAFSNLLTAAGND
PATACGLWQTS---

---TIKDEFKKAAVVIPDNGAEEIVDPWVRFIGNEGDPNNVRTYTFMAYNLTNPIETMQG
HLPKYQEVGPYSYNYIYERINANLYEDDEKLSFKLWKRYFPIVADGYRDPTKDTIYHFNL
VYGAAVKQAGSEVALSVALTAAAMGKIITGLTDPSFKVKAGFAAAPTVTAGAFSNLLTAA
GNDPATACGLWQTS

Frame B:
qlkmnlkkqpl*fqimvqkkllihgfvslemkeiqtmlepiplwhii*piqlkpckviyq
nikklvhtvtitsmnvsmqtsmkmmkn*vsnfgnvisqlllmvieiqpkilsiisi*ymv
lplnkqvvklhfq*l*qqlqwvklslvsltqalklklvsllhqqlllelfqif*lqlvmt
qllhvdfgkl---

---qlkmnlkkqpl*fqimvqkkllihgfvslemkeiqtmlepiplwhii*piqlkpckv
iyqnikklvhtvtitsmnvsmqtsmkmmkn*vsnfgnvisqlllmvieiqpkilsiisi*
ymvlplnkqvvklhfq*l*qqlqwvklslvsltqalklklvsllhqqlllelfqif*lql
vmtqllhvdfgkl

Frame C:
n*r*i*kssrcnsr*wcrrnc*smgsfhwk*rrskqc*nlylygi*fnqsn*nharsftk
isrswsiqlqlhl*tyqckpl*r**kikfqtletlfpncc*wl*rsnqryylsfqfsiwc
cr*tsr**sctfssfnsscng*nyhwsh*pkl*s*swfrcctnsycwsffksfncsw**p
sycmwtlan*---

---n*r*i*kssrcnsr*wcrrnc*smgsfhwk*rrskqc*nlylygi*fnqsn*nhars
ftkisrswsiqlqlhl*tyqckpl*r**kikfqtletlfpncc*wl*rsnqryylsfqfs
iwccr*tsr**sctfssfnsscng*nyhwsh*pkl*s*swfrcctnsycwsffksfncsw
**psycmwtlan*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1182 (FC-IC1182Q) /CSM/FC-IC/FC-IC1182Q.Seq.d/                  2232   0.0
FC-IC1150 (FC-IC1150Q) /CSM/FC-IC/FC-IC1150Q.Seq.d/                  1136   0.0
FC-IC0840 (FC-IC0840Q) /CSM/FC-IC/FC-IC0840Q.Seq.d/                  1136   0.0
FC-IC1504 (FC-IC1504Q) /CSM/FC-IC/FC-IC1504Q.Seq.d/                  1130   0.0
FC-IC0304 (FC-IC0304Q) /CSM/FC-IC/FC-IC0304Q.Seq.d/                  1128   0.0
FC-IC0275 (FC-IC0275Q) /CSM/FC-IC/FC-IC0275Q.Seq.d/                  1128   0.0
FC-IC0618 (FC-IC0618Q) /CSM/FC-IC/FC-IC0618Q.Seq.d/                  1124   0.0
FC-IC0549 (FC-IC0549Q) /CSM/FC-IC/FC-IC0549Q.Seq.d/                  1080   0.0
FC-IC0758 (FC-IC0758Q) /CSM/FC-IC/FC-IC0758Q.Seq.d/                   959   0.0
FC-IC0104 (FC-IC0104Q) /CSM/FC-IC/FC-IC0104Q.Seq.d/                   539   e-152
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF238324|AF238324.1 Dictyostelium discoideum lysosomal integral membrane protein II (lmpB) mRNA, complete cds.  1136   0.0    1
AC146585|AC146585.12 Medicago truncatula clone mth2-68o3, WORKING DRAFT SEQUENCE.    40   0.009  10
AC139355|AC139355.7 Medicago truncatula clone mth2-36o3, complete sequence.    34   0.017  8
AZ197839|AZ197839.1 SP_1035_B2_E05_SP6E Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=1035 Col=10 Row=J, DNA sequence.    32   0.031  4
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    36   0.13   13
AE015940|AE015940.1 Clostridium tetani E88, section 5 of 10 of the complete genome.    32   0.14   14
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    34   0.23   11
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   0.30   18
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   0.39   12
AC128419|AC128419.3 Rattus norvegicus clone CH230-157G13, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    36   0.60   7
dna update 2003.12.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9BKJ9) RecName: Full=Lysosome membrane protein 2-B; AltName: F...   393   e-108
(P27615) RecName: Full=Lysosome membrane protein 2; AltName: Ful...    50   1e-04
AY496973_1(AY496973|pid:none) Schistosoma japonicum CD36-related...    47   0.001
AY810529_1(AY810529|pid:none) Schistosoma japonicum SJCHGC01875 ...    46   0.002
AF323588_1(AF323588|pid:none) Manduca sexta sensory neuron membr...    45   0.004
AY814722_1(AY814722|pid:none) Schistosoma japonicum SJCHGC06304 ...    45   0.006
(Q14108) RecName: Full=Lysosome membrane protein 2; AltName: Ful...    44   0.008
(Q55FQ9) RecName: Full=Lysosome membrane protein 2-C; AltName: F...    44   0.010
AM905328_1(AM905328|pid:none) Heliothis virescens mRNA for senso...    44   0.010
AF238325_1(AF238325|pid:none) Dictyostelium discoideum lysosomal...    44   0.010
protein update 2009. 5.21
PSORT 

 psg: 0.73  gvh: 0.34  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for FC-IC1182 is cyt
5' end seq. ID FC-IC1182F
5' end seq. 
>FC-IC1182F.Seq
ACAATTAAAGATGAATTTAAAAAAGCAGCCGTTGTAATTCCAGATAATGGTGCAGAAGAA
ATTGTTGATCCATGGGTTCGTTTCATTGGAAATGAAGGAGATCCAAACAATGTTAGAACC
TATACCTTTATGGCATATAATTTAACCAATCCAATTGAAACCATGCAAGGTCATTTACCA
AAATATCAAGAAGTTGGTCCATACAGTTACAATTACATCTATGAACGTATCAATGCAAAC
CTCTATGAAGATGATGAAAAATTAAGTTTCAAACTTTGGAAACGTTATTTCCCAATTGTT
GCTGATGGTTATAGAGATCCAACCAAAGATACTATCTATCATTTCAATTTAGTATATGGT
GCTGCCGTTAAACAAGCAGGTAGTGAAGTTGCACTTTCAGTAGCTTTAACAGCAGCTGCA
ATGGGTAAAATTATCACTGGTCTCACTGACCCAAGCTTTAAAGTTAAAGCTGGTTTCGCT
GCTGCACCAACAGTTACTGCTGGAGCTTTTTCAAATCTTTTAACTGCAGCTGGTAATGAC
CCAGCTACTGCATGTGGACTTTGGCAAACTAGTNNNNNNNNNN
Length of 5' end seq. 583
3' end seq. ID FC-IC1182Z
3' end seq. 
>FC-IC1182Z.Seq
NNNNNNNNNNACAATTAAAGATGAATTTAAAAAAGCAGCCGTTGTAATTCCAGATAATGG
TGCAGAAGAAATTGTTGATCCATGGGTTCGTTTCATTGGAAATGAAGGAGATCCAAACAA
TGTTAGAACCTATACCTTTATGGCATATAATTTAACCAATCCAATTGAAACCATGCAAGG
TCATTTACCAAAATATCAAGAAGTTGGTCCATACAGTTACAATTACATCTATGAACGTAT
CAATGCAAACCTCTATGAAGATGATGAAAAATTAAGTTTCAAACTTTGGAAACGTTATTT
CCCAATTGTTGCTGATGGTTATAGAGATCCAACCAAAGATACTATCTATCATTTCAATTT
AGTATATGGTGCTGCCGTTAAACAAGCAGGTAGTGAAGTTGCACTTTCAGTAGCTTTAAC
AGCAGCTGCAATGGGTAAAATTATCACTGGTCTCACTGACCCAAGCTTTAAAGTTAAAGC
TGGTTTCGCTGCTGCACCAACAGTTACTGCTGGAGCTTTTTCAAATCTTTTAACTGCAGC
TGGTAATGACCCAGCTACTGCATGTGGACTTTGGCAAACTAGT
Length of 3' end seq. 583
Connected seq. ID FC-IC1182P
Connected seq. 
>FC-IC1182P.Seq
ACAATTAAAGATGAATTTAAAAAAGCAGCCGTTGTAATTCCAGATAATGGTGCAGAAGAA
ATTGTTGATCCATGGGTTCGTTTCATTGGAAATGAAGGAGATCCAAACAATGTTAGAACC
TATACCTTTATGGCATATAATTTAACCAATCCAATTGAAACCATGCAAGGTCATTTACCA
AAATATCAAGAAGTTGGTCCATACAGTTACAATTACATCTATGAACGTATCAATGCAAAC
CTCTATGAAGATGATGAAAAATTAAGTTTCAAACTTTGGAAACGTTATTTCCCAATTGTT
GCTGATGGTTATAGAGATCCAACCAAAGATACTATCTATCATTTCAATTTAGTATATGGT
GCTGCCGTTAAACAAGCAGGTAGTGAAGTTGCACTTTCAGTAGCTTTAACAGCAGCTGCA
ATGGGTAAAATTATCACTGGTCTCACTGACCCAAGCTTTAAAGTTAAAGCTGGTTTCGCT
GCTGCACCAACAGTTACTGCTGGAGCTTTTTCAAATCTTTTAACTGCAGCTGGTAATGAC
CCAGCTACTGCATGTGGACTTTGGCAAACTAGT----------ACAATTAAAGATGAATT
TAAAAAAGCAGCCGTTGTAATTCCAGATAATGGTGCAGAAGAAATTGTTGATCCATGGGT
TCGTTTCATTGGAAATGAAGGAGATCCAAACAATGTTAGAACCTATACCTTTATGGCATA
TAATTTAACCAATCCAATTGAAACCATGCAAGGTCATTTACCAAAATATCAAGAAGTTGG
TCCATACAGTTACAATTACATCTATGAACGTATCAATGCAAACCTCTATGAAGATGATGA
AAAATTAAGTTTCAAACTTTGGAAACGTTATTTCCCAATTGTTGCTGATGGTTATAGAGA
TCCAACCAAAGATACTATCTATCATTTCAATTTAGTATATGGTGCTGCCGTTAAACAAGC
AGGTAGTGAAGTTGCACTTTCAGTAGCTTTAACAGCAGCTGCAATGGGTAAAATTATCAC
TGGTCTCACTGACCCAAGCTTTAAAGTTAAAGCTGGTTTCGCTGCTGCACCAACAGTTAC
TGCTGGAGCTTTTTCAAATCTTTTAACTGCAGCTGGTAATGACCCAGCTACTGCATGTGG
ACTTTGGCAAACTAGT
Length of connected seq. 1146
Full length Seq ID -
Full length Seq. -
Length of full length seq. -