FC-IC1177
Library FC-IC
(Link to library)
Clone ID FC-IC1177
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U07878-1
Original site URL
Representative seq. ID FC-IC1177P
(Link to Original site)
Representative DNA sequence
>FC-IC1177 (FC-IC1177Q) /CSM/FC-IC/FC-IC1177Q.Seq.d/
ACTCTATACTGTAACTGAAACACCAGTATCCAATTTAAGAACACTTTTAGATGCTGAACC
AACAATTGTTGAATCATATCCAGGTCAAGATATTCAACAATTTGAAGTTAATCAATTTTC
AGATTTAACAGCATCAGAGTTTAGTAATATTTATGCCGGTGCANATGCATCATTAGCTAT
TTCTGAAGTAGCAGNATCAACTTTATCAACTGGTGCCATTGTTGGTATTGCAGNTGGTGG
TAGNGTNGCACTTTATXXXXXXXXXXACTTTCAGTAATTTCAGATTATGCTGATGAAATG
CCACCAATTTTAATTGATTTTACTGTTCCTTCTTTTGTTATTGTAAACCCAACTCAAACA
TCTGTAATTAGTATTATGCTTACATTCAGTGATCCGATTAATGGTATTGAATCAATTAAT
GTAACCATTGTAAGTGAATATGATCTAATTGGTGAAAAATTTACTTTTTACCCTCCATTA
AGTAATAATAAAAAGGTAATTTTTTCAATTGAAAAGATAATTGAAGAGGGTTTTTGTAAA
AATCAAACCTTTAGAATCTCTGAAATTGCAACTCGTGATACAAGTGGGCACTATGCAAAT
AGT
sequence update 2001.11.23
Translated Amino Acid sequence
LYTVTETPVSNLRTLLDAEPTIVESYPGQDIQQFEVNQFSDLTASEFSNIYAGAXASLAI
SEVAXSTLSTGAIVGIAXGGXVALY---

---LSVISDYADEMPPILIDFTVPSFVIVNPTQTSVISIMLTFSDPINGIESINVTIVSE
YDLIGEKFTFYPPLSNNKKVIFSIEKIIEEGFCKNQTFRISEIATRDTSGHYANS


Translated Amino Acid sequence (All Frames)
Frame A:
tlycn*ntsiqfkntfrc*tnnc*iisrsrysti*s*sifrfnsirv**ylcrcxciisy
f*ssxinfinwchcwycxww*xxtl---

---tfsnfrlc**natnfn*fycsffcyckpnsnicn*yyayiq*sd*wy*in*cnhck*
i*snw*kiyflpsik***kgnffn*kdn*rgfl*ksnl*nl*ncns*ykwalck*

Frame B:
LYTVTETPVSNLRTLLDAEPTIVESYPGQDIQQFEVNQFSDLTASEFSNIYAGAXASLAI
SEVAXSTLSTGAIVGIAXGGXVALY---

---LSVISDYADEMPPILIDFTVPSFVIVNPTQTSVISIMLTFSDPINGIESINVTIVSE
YDLIGEKFTFYPPLSNNKKVIFSIEKIIEEGFCKNQTFRISEIATRDTSGHYANS

Frame C:
sil*lkhqypi*ehf*mlnqqllnhiqvkifnnlklinfqi*qhqslvifmpvxmhh*lf
lk*qxqlyqlvpllvlqxvvxxhf---

---fq*fqimlmkchqf*lillflllll*tqlkhl*lvlclhsvirlmvlnqlm*pl*vn
mi*lvknllftlh*viikr*ffqlkr*lkrvfvkikpleslklqlviqvgtmqi

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC1177 (FC-IC1177Q) /CSM/FC-IC/FC-IC1177Q.Seq.d/ 1106 0.0
FC-IC1181 (FC-IC1181Q) /CSM/FC-IC/FC-IC1181Q.Seq.d/ 660 0.0
FC-IC1408 (FC-IC1408Q) /CSM/FC-IC/FC-IC1408Q.Seq.d/ 472 e-132
FC-IC1375 (FC-IC1375Q) /CSM/FC-IC/FC-IC1375Q.Seq.d/ 472 e-132
FC-IC1186 (FC-IC1186Q) /CSM/FC-IC/FC-IC1186Q.Seq.d/ 472 e-132
FC-IC1184 (FC-IC1184Q) /CSM/FC-IC/FC-IC1184Q.Seq.d/ 472 e-132
FC-IC0991 (FC-IC0991Q) /CSM/FC-IC/FC-IC0991Q.Seq.d/ 472 e-132
FC-IC0916 (FC-IC0916Q) /CSM/FC-IC/FC-IC0916Q.Seq.d/ 472 e-132
FC-IC0888 (FC-IC0888Q) /CSM/FC-IC/FC-IC0888Q.Seq.d/ 472 e-132
FC-IC0797 (FC-IC0797Q) /CSM/FC-IC/FC-IC0797Q.Seq.d/ 472 e-132

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 668 0.0 8
AE016949|AE016949.1 Enterococcus faecalis V583, section 3 of 11 of the complete genome. 34 3e-04 10
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 32 0.004 12
U32758|U32758.1 Haemophilus influenzae Rd section 73 of 163 of the complete genome. 34 0.052 5
AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5. 34 0.053 10
AP004171|AP004171.1 Mycoplasma penetrans genomic DNA, complete sequence, section 2/5. 32 0.075 12
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 34 0.076 11
AC093163|AC093163.4 Homo sapiens BAC clone RP11-774M20 from 4, complete sequence. 44 0.12 4
BX572093|BX572093.1 Prochlorococcus marinus MED4 complete genome; segment 4/5. 32 0.12 11
AP006356|AP006356.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 6, clone:LjT06I08, TM0082b. 36 0.15 4
dna update 2003.12.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116924_8(AC116924|pid:none) Dictyostelium discoideum chromosom... 49 8e-05
AC116957_18(AC116957|pid:none) Dictyostelium discoideum chromoso... 35 2.0
CR378668_201(CR378668|pid:none) Photobacterium profundum SS9; se... 35 2.0
CP000510_2684(CP000510|pid:none) Psychromonas ingrahamii 37, com... 33 4.5

protein update 2009. 1. 4
PSORT

psg: 0.75 gvh: 0.48 alm: 0.30 top: 0.33 tms: 0.07 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.07 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
24.0 %: endoplasmic reticulum
20.0 %: mitochondrial
16.0 %: nuclear
8.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for FC-IC1177 is cyt

5' end seq. ID FC-IC1177F
5' end seq.
>FC-IC1177F.Seq
ACTCTATACTGTAACTGAAACACCAGTATCCAATTTAAGAACACTTTTAGATGCTGAACC
AACAATTGTTGAATCATATCCAGGTCAAGATATTCAACAATTTGAAGTTAATCAATTTTC
AGATTTAACAGCATCAGAGTTTAGTAATATTTATGCCGGTGCANATGCATCATTAGCTAT
TTCTGAAGTAGCAGNATCAACTTTATCAACTGGTGCCATTGTTGGTATTGCAGNTGGTGG
TAGNGTNGCACTTTATNNNNNNNNNN
Length of 5' end seq. 266
3' end seq. ID FC-IC1177Z
3' end seq.
>FC-IC1177Z.Seq
NNNNNNNNNNACTTTCAGTAATTTCAGATTATGCTGATGAAATGCCACCAATTTTAATTG
ATTTTACTGTTCCTTCTTTTGTTATTGTAAACCCAACTCAAACATCTGTAATTAGTATTA
TGCTTACATTCAGTGATCCGATTAATGGTATTGAATCAATTAATGTAACCATTGTAAGTG
AATATGATCTAATTGGTGAAAAATTTACTTTTTACCCTCCATTAAGTAATAATAAAAAGG
TAATTTTTTCAATTGAAAAGATAATTGAAGAGGGTTTTTGTAAAAATCAAACCTTTAGAA
TCTCTGAAATTGCAACTCGTGATACAAGTGGGCACTATGCAAATAGT
Length of 3' end seq. 347
Connected seq. ID FC-IC1177P
Connected seq.
>FC-IC1177P.Seq
ACTCTATACTGTAACTGAAACACCAGTATCCAATTTAAGAACACTTTTAGATGCTGAACC
AACAATTGTTGAATCATATCCAGGTCAAGATATTCAACAATTTGAAGTTAATCAATTTTC
AGATTTAACAGCATCAGAGTTTAGTAATATTTATGCCGGTGCANATGCATCATTAGCTAT
TTCTGAAGTAGCAGNATCAACTTTATCAACTGGTGCCATTGTTGGTATTGCAGNTGGTGG
TAGNGTNGCACTTTAT----------ACTTTCAGTAATTTCAGATTATGCTGATGAAATG
CCACCAATTTTAATTGATTTTACTGTTCCTTCTTTTGTTATTGTAAACCCAACTCAAACA
TCTGTAATTAGTATTATGCTTACATTCAGTGATCCGATTAATGGTATTGAATCAATTAAT
GTAACCATTGTAAGTGAATATGATCTAATTGGTGAAAAATTTACTTTTTACCCTCCATTA
AGTAATAATAAAAAGGTAATTTTTTCAATTGAAAAGATAATTGAAGAGGGTTTTTGTAAA
AATCAAACCTTTAGAATCTCTGAAATTGCAACTCGTGATACAAGTGGGCACTATGCAAAT
AGT
Length of connected seq. 593
Full length Seq ID -
Full length Seq. -
Length of full length seq. -