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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1174
Library FC-IC
(Link to library)
Clone ID FC-IC1174
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16271-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>FC-IC1174 (FC-IC1174Q) /CSM/FC-IC/FC-IC1174Q.Seq.d/
XXXXXXXXXXACTAAATTAAGTGGTTTAGGAGAAGCTTGTGGCACCCCATTCACAGAATG
TGCAGAACCATTCGCATGTCGTTCTGTTACAACCACCAAAGGTAATTTACAAACTTGTGC
TATGCCAGATTATTTAGGTTTTGGTGAAAGTTGTAATTCAGACTACCAATGTGGTAATGG
TTTAACATGTAATGAAGAGATTTGCTCATTGAAACCACACGTTATTTGTTCTAACGATGG
TCAATGTCCATTTGGTCAATTCTGTAATGGT
sequence update 2001.11. 5
Translated Amino Acid sequence 
---KLSGLGEACGTPFTECAEPFACRSVTTTKGNLQTCAMPDYLGFGESCNSDYQCGNGL
TCNEEICSLKPHVICSNDGQCPFGQFCNG
Translated Amino Acid sequence (All Frames) 
Frame A:
---ln*vv*eklvaphsqnvqnhshvvllqppkviyklvlcqii*vlvkvviqttnvvmv
*hvmkrfah*nhtlfvltmvnvhlvnsvm


Frame B:
---*ikwfrrslwhpihrmcrtirmsfcynhqr*ftnlcyarlfrfw*kl*frlpmw*wf
nm**rdlliettrylf*rwsmsiwsil*w


Frame C:
---KLSGLGEACGTPFTECAEPFACRSVTTTKGNLQTCAMPDYLGFGESCNSDYQCGNGL
TCNEEICSLKPHVICSNDGQCPFGQFCNG
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1176 (FC-IC1176Q) /CSM/FC-IC/FC-IC1176Q.Seq.d/                   517   e-146
FC-IC1174 (FC-IC1174Q) /CSM/FC-IC/FC-IC1174Q.Seq.d/                   517   e-146
FC-IC1758 (FC-IC1758Q) /CSM/FC-IC/FC-IC1758Q.Seq.d/                   509   e-144
FC-IC1685 (FC-IC1685Q) /CSM/FC-IC/FC-IC1685Q.Seq.d/                   509   e-144
FC-IC1502 (FC-IC1502Q) /CSM/FC-IC/FC-IC1502Q.Seq.d/                   509   e-144
FC-IC1367 (FC-IC1367Q) /CSM/FC-IC/FC-IC1367Q.Seq.d/                   509   e-144
FC-IC1366 (FC-IC1366Q) /CSM/FC-IC/FC-IC1366Q.Seq.d/                   509   e-144
FC-IC1304 (FC-IC1304Q) /CSM/FC-IC/FC-IC1304Q.Seq.d/                   509   e-144
FC-IC1238 (FC-IC1238Q) /CSM/FC-IC/FC-IC1238Q.Seq.d/                   509   e-144
FC-IC1210 (FC-IC1210Q) /CSM/FC-IC/FC-IC1210Q.Seq.d/                   509   e-144
own update 2001.11.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB079253|AB079253.1 Dictyostelium discoideum Dd-gdcA mRNA, complete cds.   509   e-141  1
AB079606|AB079606.1 Dictyostelium discoideum gene for gp64-like protein, complete cds.   509   e-141  1
AB022216|AB022216.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGD8.    42   0.18   3
BW184756|BW184756.1 Ciona intestinalis cDNA, clone:rciht030h24, 3' end, single read.    34   0.64   2
AV839321|AV839321.1 Ciona intestinalis cDNA, clone:rciad02i09, 3' end, single read.    34   0.66   2
BW167829|BW167829.1 Ciona intestinalis cDNA, clone:rcinc016p13, 3' end, single read.    34   0.69   2
AC108532|AC108532.6 Rattus norvegicus clone CH230-91F12, WORKING DRAFT SEQUENCE, 2 unordered pieces.    36   2.6    2
BQ476544|BQ476544.1 curculio2d05.g Curculio glandium cDNA Curculio glandium cDNA clone curculio2d05 3', mRNA sequence.    40   15     1
BQ476270|BQ476270.1 curculio2e10.b Curculio glandium cDNA Curculio glandium cDNA clone curculio2e10 5', mRNA sequence.    40   15     1
BQ476190|BQ476190.1 curculio1d05.b Curculio glandium cDNA Curculio glandium cDNA clone curculio1d05 5', mRNA sequence.    40   15     1
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB079253_1(AB079253|pid:none) Dictyostelium discoideum Dd-gdcA m...   196   3e-49
AB027502_1(AB027502|pid:none) Polysphondylium pallidum gene for ...    46   4e-04
T16840(T16840)hypothetical protein T10E10.4 - Caenorhabditis ele...    41   0.014
U39644_2(U39644|pid:none) Caenorhabditis elegans cosmid T10E10, ...    41   0.014
CP001131_3388(CP001131|pid:none) Anaeromyxobacter sp. K, complet...    39   0.054
CP001359_3451(CP001359|pid:none) Anaeromyxobacter dehalogenans 2...    39   0.054
AP007166_483(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    39   0.070
CP000251_3326(CP000251|pid:none) Anaeromyxobacter dehalogenans 2...    39   0.070
BC104354_1(BC104354|pid:none) Mus musculus predicted gene, ENSMU...    37   0.16
EF596889_1(EF596889|pid:none) Drosophila simulans strain simB MD...    37   0.16
protein update 2009. 5.21
PSORT 

 psg: 0.78  gvh: 0.41  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for FC-IC1174 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-IC1174Z
3' end seq. 
>FC-IC1174Z.Seq
NNNNNNNNNNACTAAATTAAGTGGTTTAGGAGAAGCTTGTGGCACCCCATTCACAGAATG
TGCAGAACCATTCGCATGTCGTTCTGTTACAACCACCAAAGGTAATTTACAAACTTGTGC
TATGCCAGATTATTTAGGTTTTGGTGAAAGTTGTAATTCAGACTACCAATGTGGTAATGG
TTTAACATGTAATGAAGAGATTTGCTCATTGAAACCACACGTTATTTGTTCTAACGATGG
TCAATGTCCATTTGGTCAATTCTGTAATGGT
Length of 3' end seq. 271
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -