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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1169
Library FC-IC
(Link to library)
Clone ID FC-IC1169
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15169-1
Original site URL
Representative seq. ID FC-IC1169E
(Link to Original site)
Representative DNA sequence 
>FC-IC1169 (FC-IC1169Q) /CSM/FC-IC/FC-IC1169Q.Seq.d/
ACTTATTTTTATAAGAATTAGCTTTTGGATTTCTATTATTATATTTATTATTCTTATATT
TATTAAAGGATCGATTTTTATAGATCATCTTTCTTCTTATAGAAGCCGTGTATTCCTGTA
TTTGTCGATCTTTAAGTATTTCGCTTGATGGAACTACTTTCTTATTTATTGGACTAAATT
TATAATTTTTTTTTTAATAATTTAATATTCTCTGTTATTTTTTTATAGTGTGTTATTACA
TGCTTAGTATGCTTTAATAATAGTCGTCGTCTATAATTTGGGCCTATATAACTTGTTGGA
AATTGTTGGGCTCTATATCGTAATAGTAAAAGTTGCCTTTGTAAAATTCTTATACGTTTC
CTTAAAAATCGATGTAAGATCGATTTTTTAAAAGCGTTATATTTAAATTTACTCTTCTTT
GTTTGCGGTTTACGCGATTTTGCTTTTGT
sequence update 2001.11.10
Translated Amino Acid sequence 
tyfykn*lldfyyyiyysyiy*ridfyrssffl*kpcipvfvdl*vfrlmellsylld*i
ynfffnnlifsvifl*cvitclvcfnnsrrl*fgpi*LVGNCWALYRNSKSCLCKILIRF
LKNRCKIDFLKALYLNLLFFVCGLRDFAF
Translated Amino Acid sequence (All Frames) 
Frame A:
tyfykn*lldfyyyiyysyiy*ridfyrssffl*kpcipvfvdl*vfrlmellsylld*i
ynfffnnlifsvifl*cvitclvcfnnsrrl*fgpi*LVGNCWALYRNSKSCLCKILIRF
LKNRCKIDFLKALYLNLLFFVCGLRDFAF


Frame B:
lifirisfwisiiifiilifikgsifidhlssyrsrvflylsifkyfa*wnyfliywtkf
iifflii*ysllffysvllha*yaliivvvynlglynlleivglyivivkvafvkflyvs
lkidvrsif*kryi*iysslfavyailll


Frame C:
lfl*elafgflllyllflyllkdrfl*iifllieavyscicrslsisldgttflfiglnl
*fff**fnilcyffivcyymlsml***sssiiwayitcwkllgsis***klpl*nsytfp
*ksm*drffksvifkftllclrftrfcfc
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1169 (FC-IC1169Q) /CSM/FC-IC/FC-IC1169Q.Seq.d/                   660   0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/               650   0.0
VSF392 (VSF392Q) /CSM/VS/VSF3-D/VSF392Q.Seq.d/                        307   8e-83
FC-BA06 (FC-BA06Q) /CSM/FC/FC-BA/FC-BA06Q.Seq.d/                      218   5e-56
VSD456 (VSD456Q) /CSM/VS/VSD4-C/VSD456Q.Seq.d/                         40   0.028
VFM553 (VFM553Q) /CSM/VF/VFM5-C/VFM553Q.Seq.d/                         40   0.028
VFM249 (VFM249Q) /CSM/VF/VFM2-C/VFM249Q.Seq.d/                         40   0.028
VFH550 (VFH550Q) /CSM/VF/VFH5-C/VFH550Q.Seq.d/                         40   0.028
VFD241 (VFD241Q) /CSM/VF/VFD2-B/VFD241Q.Seq.d/                         40   0.028
VFA669 (VFA669Q) /CSM/VF/VFA6-C/VFA669Q.Seq.d/                         40   0.028
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence.   446   0.0    3
D21196|D21196.1 Dictyostelium discoideum mitochondrial DNA.       446   0.0    3
CA085629|CA085629.1 SCJLAM2094A04.g AM2 Saccharum officinarum cDNA clone SCJLAM2094A04 5', mRNA sequence.    38   0.076  2
BE239846|BE239846.1 EST403895 MHRP- Medicago truncatula cDNA clone pMHRP-38H3, mRNA sequence.    38   2.7    2
AL385498|AL385498.1 Medicago truncatula EST MtBC28H08R1 : T7 end of clone MtBC28H08 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    38   2.8    2
BQ152874|BQ152874.1 NF026A10IR1F1081 Irradiated Medicago truncatula cDNA clone NF026A10IR 5', mRNA sequence.    38   3.1    2
BG454067|BG454067.1 NF105E04LF1F1024 Developing leaf Medicago truncatula cDNA clone NF105E04LF 5', mRNA sequence.    38   3.3    2
AL382558|AL382558.1 Medicago truncatula EST MtBC08B11F1 : T3 end of clone MtBC08B11 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    38   3.3    2
AL381865|AL381865.1 Medicago truncatula EST MtBC03E03R1 : T7 end of clone MtBC03E03 of  cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).    38   3.3    2
AF547983|AF547983.1 Schizosaccharomyces japonicus mitochondrial DNA, complete genome.    40   3.4    5
dna update 2003.11.19
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 471,682,312
protein update 2009. 7. 1
PSORT 

 psg: 0.61  gvh: 0.59  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for FC-IC1169 is nuc
5' end seq. ID FC-IC1169F
5' end seq. 
>FC-IC1169F.Seq
ACTTATTTTTATAAGAATTAGCTTTTGGATTTCTATTATTATATTTATTATTCTTATATT
TATTAAAGGATCGATTTTTATAGATCATCTTTCTTCTTATAGAAGCCGTGTATTCCTGTA
TTTGTCGATCTTTAAGTATTTCGCTTGATGGAACTACTTTCTTATTTATTGGACTAAATT
TATAATTTTTTTTTTAATAATTTAATATTCTCTGTTATTTTTTTATAGTGNGTTATTACA
TGCTTAGTATGCTTTAATAATAGTCGTCGTCTATAATTTGGGCCTATATAACTTGTTGGA
AATTGTTGGGCTCTATATCGTAATAGTAAAAGTTGCCTTTGTAAAATTCTTATACGTTTC
CTTAAAAATCGATGTAAGATCGATTTTTTAAAAGCGTTATATTTAAATTTACTCTTCTTT
GTTTGCGGTTTACGCGATTTTGCTTTTGTNNNNNNNNNN
Length of 5' end seq. 459
3' end seq. ID FC-IC1169Z
3' end seq. 
>FC-IC1169Z.Seq
NNNNNNNNNNACTTATTTTTATAAGAATTAGCTTTTGGATTTCTATTATTATATTTATTA
TTCTTATATTTATTAAAGGATCGATTTTTATAGATCATCTTTCTTCTTATAGAAGCCGTG
TATTCCTGTATTTGTCGATCTTTAAGTATTTCGCTTGATGGAACTACTTTCTTATTTATT
GGACTAAATTTATAATTTTTTTTTTAATAATTTAATATTCTCTGTTATTTTTTTATAGTG
TGTTATTACATGCTTAGTATGCTTTAATAATAGTCGTCGTCTATAATTTGGGCCTATATA
ACTTGTTGGAAATTGTTGGGCTCTATATCGTAATAGTAAAAGTTGCCTTTGTAAAATTCT
TATACGTTTCCTTAAAAATCGATGTAAGATCGATTTTTTAAAAGCGTTATATTTAAATTT
ACTCTTCTTTGTTTGCGGTTTACGCGATTTTGCTTTTGT
Length of 3' end seq. 459
Connected seq. ID FC-IC1169P
Connected seq. 
>FC-IC1169P.Seq
ACTTATTTTTATAAGAATTAGCTTTTGGATTTCTATTATTATATTTATTATTCTTATATT
TATTAAAGGATCGATTTTTATAGATCATCTTTCTTCTTATAGAAGCCGTGTATTCCTGTA
TTTGTCGATCTTTAAGTATTTCGCTTGATGGAACTACTTTCTTATTTATTGGACTAAATT
TATAATTTTTTTTTTAATAATTTAATATTCTCTGTTATTTTTTTATAGTGNGTTATTACA
TGCTTAGTATGCTTTAATAATAGTCGTCGTCTATAATTTGGGCCTATATAACTTGTTGGA
AATTGTTGGGCTCTATATCGTAATAGTAAAAGTTGCCTTTGTAAAATTCTTATACGTTTC
CTTAAAAATCGATGTAAGATCGATTTTTTAAAAGCGTTATATTTAAATTTACTCTTCTTT
GTTTGCGGTTTACGCGATTTTGCTTTTGT----------ACTTATTTTTATAAGAATTAG
CTTTTGGATTTCTATTATTATATTTATTATTCTTATATTTATTAAAGGATCGATTTTTAT
AGATCATCTTTCTTCTTATAGAAGCCGTGTATTCCTGTATTTGTCGATCTTTAAGTATTT
CGCTTGATGGAACTACTTTCTTATTTATTGGACTAAATTTATAATTTTTTTTTTAATAAT
TTAATATTCTCTGTTATTTTTTTATAGTGTGTTATTACATGCTTAGTATGCTTTAATAAT
AGTCGTCGTCTATAATTTGGGCCTATATAACTTGTTGGAAATTGTTGGGCTCTATATCGT
AATAGTAAAAGTTGCCTTTGTAAAATTCTTATACGTTTCCTTAAAAATCGATGTAAGATC
GATTTTTTAAAAGCGTTATATTTAAATTTACTCTTCTTTGTTTGCGGTTTACGCGATTTT
GCTTTTGT
Length of connected seq. 898
Full length Seq ID FC-IC1169E
Full length Seq. 
>FC-IC1169E.Seq
ACTTATTTTTATAAGAATTAGCTTTTGGATTTCTATTATTATATTTATTATTCTTATATT
TATTAAAGGATCGATTTTTATAGATCATCTTTCTTCTTATAGAAGCCGTGTATTCCTGTA
TTTGTCGATCTTTAAGTATTTCGCTTGATGGAACTACTTTCTTATTTATTGGACTAAATT
TATAATTTTTTTTTTAATAATTTAATATTCTCTGTTATTTTTTTATAGTGTGTTATTACA
TGCTTAGTATGCTTTAATAATAGTCGTCGTCTATAATTTGGGCCTATATAACTTGTTGGA
AATTGTTGGGCTCTATATCGTAATAGTAAAAGTTGCCTTTGTAAAATTCTTATACGTTTC
CTTAAAAATCGATGTAAGATCGATTTTTTAAAAGCGTTATATTTAAATTTACTCTTCTTT
GTTTGCGGTTTACGCGATTTTGCTTTTGT
Length of full length seq. 449