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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1149
Library FC-IC
(Link to library)
Clone ID FC-IC1149
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16271-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>FC-IC1149 (FC-IC1149Q) /CSM/FC-IC/FC-IC1149Q.Seq.d/
CACCATTACAGAATTGACCAAATGGACATTGACCATCGTTAGAACAAATAACGTGTGGTT
TCAATGAGCAAATCTCTTCATTACATGTTAAACCATTACCACATTGGTAGTCTGAATTAC
AACTTTCACCAAAACCTAAATAATCTGGCATAGCACAAGTTTGTAAATTACCTTTGGTGG
TTGTAACAGAACGACATGCGAATGGTTCTGCACATTCTGTGAATGGGGTGCCACAAGTTT
CTCCTAAACCACTTAATTTAGTXXXXXXXXXX
sequence update 2001.11. 5
Translated Amino Acid sequence 
plqn*pngh*psleqitcgfneqisslhvkplphw*selqlspkpk*SGIAQVCKLPLVV
VTERHANGSAHSVNGVPQVSPKPLNL---
Translated Amino Acid sequence (All Frames) 
Frame A:
hhyridqmdidhr*nk*rvvsmskslhymlnhyhigslnynfhqnlnnla*hkfvnylww
l*qndmrmvlhil*mgchkfllnhli*---


Frame B:
titeltkwtltivrtnnvwfq*anlfitc*tittlvv*ittftkt*iiwhstsl*itfgg
cnrttcewfctfcewgatsfs*tt*f---


Frame C:
plqn*pngh*psleqitcgfneqisslhvkplphw*selqlspkpk*SGIAQVCKLPLVV
VTERHANGSAHSVNGVPQVSPKPLNL---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1151 (FC-IC1151Q) /CSM/FC-IC/FC-IC1151Q.Seq.d/                   519   e-147
FC-IC1149 (FC-IC1149Q) /CSM/FC-IC/FC-IC1149Q.Seq.d/                   519   e-147
FC-IC1758 (FC-IC1758Q) /CSM/FC-IC/FC-IC1758Q.Seq.d/                   517   e-146
FC-IC1685 (FC-IC1685Q) /CSM/FC-IC/FC-IC1685Q.Seq.d/                   517   e-146
FC-IC1502 (FC-IC1502Q) /CSM/FC-IC/FC-IC1502Q.Seq.d/                   517   e-146
FC-IC1367 (FC-IC1367Q) /CSM/FC-IC/FC-IC1367Q.Seq.d/                   517   e-146
FC-IC1366 (FC-IC1366Q) /CSM/FC-IC/FC-IC1366Q.Seq.d/                   517   e-146
FC-IC1304 (FC-IC1304Q) /CSM/FC-IC/FC-IC1304Q.Seq.d/                   517   e-146
FC-IC1238 (FC-IC1238Q) /CSM/FC-IC/FC-IC1238Q.Seq.d/                   517   e-146
FC-IC1210 (FC-IC1210Q) /CSM/FC-IC/FC-IC1210Q.Seq.d/                   517   e-146
own update 2003. 7.14
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU272188) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   519   e-143  1
(AU272187) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   519   e-143  1
(AU272185) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   519   e-143  1
(AB079606) Dictyostelium discoideum Dd-gdcA gene, complete cds.   517   e-143  1
(AB079253) Dictyostelium discoideum Dd-gdcA mRNA, complete cds.   517   e-143  1
(AU275230) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   517   e-143  1
(AU275192) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   517   e-143  1
(AU275191) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   517   e-143  1
(AU275013) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   517   e-143  1
(AU275012) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   517   e-143  1
dna update 2009. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB079253_1(AB079253|pid:none) Dictyostelium discoideum Dd-gdcA m...   197   7e-50
AB027502_1(AB027502|pid:none) Polysphondylium pallidum gene for ...    46   3e-04
T16840(T16840)hypothetical protein T10E10.4 - Caenorhabditis ele...    41   0.014
U39644_2(U39644|pid:none) Caenorhabditis elegans cosmid T10E10, ...    41   0.014
AP007166_483(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    40   0.018
CP001131_3388(CP001131|pid:none) Anaeromyxobacter sp. K, complet...    39   0.053
CP001359_3451(CP001359|pid:none) Anaeromyxobacter dehalogenans 2...    39   0.053
CP000251_3326(CP000251|pid:none) Anaeromyxobacter dehalogenans 2...    39   0.069
S47645(S47645) tMDC I protein - crab-eating macaque  &X76637_1(X...    38   0.12
AP007166_484(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    37   0.15
protein update 2009. 8.22
PSORT 

 psg: 0.82  gvh: 0.47  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for FC-IC1149 is cyt
5' end seq. ID FC-IC1149F
5' end seq. 
>FC-IC1149F.Seq
CACCATTACAGAATTGACCAAATGGACATTGACCATCGTTAGAACAAATAACGTGTGGTT
TCAATGAGCAAATCTCTTCATTACATGTTAAACCATTACCACATTGGTAGTCTGAATTAC
AACTTTCACCAAAACCTAAATAATCTGGCATAGCACAAGTTTGTAAATTACCTTTGGTGG
TTGTAACAGAACGACATGCGAATGGTTCTGCACATTCTGTGAATGGGGTGCCACAAGTTT
CTCCTAAACCACTTAATTTAGTNNNNNNNNNN
Length of 5' end seq. 272
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -