>FC-IC1144 (FC-IC1144Q) /CSM/FC-IC/FC-IC1144Q.Seq.d/
CAAAGCTTTTAATATTAATAAACAAAATGAACCCAGGTCTCTACGCCGATTTAACCAAAC
CAACTGCTGATTTCATCAAAAAGGATTTCGCAGAAACCTTCAAACTCGATACCACCTTCA
AAGGCAAATATGGTTCAATTGTTGCAGTCACTGATATTAAAGACAGTGGTGTTGTTGCCT
CAATTCAACCAAAAGCTGATTTCACCAAATATCTCGGTAAAGTCTCAAATGGTAACTTTA
CTGTCGATACCAATGGTGTAAAGAAAGGTGAATTCACCATTGAAAATATTATTCCAGGTT
TAAAAGCCGTCGCCAATGGTGATTCAAAACAAAATTTCTCAACCGAATTCCAATATAAAA
AAGATAAAATTGCTTTCACCCTTTTTGGTCACAACAATAAATCCTTCAACACTTCATTAG
CTTTCCTCATTAACCCAACTTTCTCTGTTGGTGTCCAAGCTGAAGGTAACGCCAAAAACA
CCCTCAAAAACGTCAACGCCACCATCACCATCAGACCACGTCCAGACGTCTTTGTTTCAA
TCGTCGATAGATTCATGGATAAACAAATCCTCTTATCCACCCTCTACACTGCCACCTCAA
AATTATCCTTTGCTGGTGATGGTTACTGTCGACCTCAAAGCCTCTGAAAAAGCACCATCA
TTCAACGTTGGGTACCTTCGGCCGCGACCCGCCCTAAGCCGAATTXXXXXXXXXXCAAAG
CTTTTAATATTAATAAACAAAATGAACCCAGGTCTCTACGCCGATTTANCCAAACCAACT
GCTGATTTCATCAAAAAGGATTTCGCAGAAACCTTCAAACTCGATACCACCTTCAAAGGC
AAATATGGTTCAATTGTTGCAGTCACTGATATTAAAGACAGTGGTGTTGTTGCCTCAATT
CAACCAAAAGCTGATTTCACCAAATATCTCGGTAAAGTCTCAAATGGTAACTTTACTGTC
GATACCAATGGTGTAAAGAAAGGTGAATTCACCATTGAAAATATTATTCCAGGTTTAAAA
GCCGTCGCCAATGGTGATTCAAAACAAAATTTCTCAACCGAATTCCAATATAAAAAAGAT
AAAATTGCTTTCACCCTTTTTGGTCACAACAATAAATCCTTCAACACTTCATTAGCTTTC
CTCATTAACCCAACTTTCTCTGTTGGTGTCCAAGCTGAAGGTAACGCCAAAAACACCCTC
AAAAACGTCAACGCCACCATCACCATCAGACCACGTCCAGACGTCTTTGTTTCAATCGTC
GATAGATTCATGGATAAACAAATCCTCTTATCCACCCTCTACACTGCCACCTCAAAATTA
TCCTTTGCTGGTGATGTTACTGTCGACCTCAAAGCCTCTGAAAAAGCACCATCATTCAAC
GTTGGT

qsf*y**tk*tqvstpi*pnqllisskrisqkpsnsippskanmvqllqslilktvvllp
qfnqklispnisvksqmvtllsipmv*rkvnsplkilfqv*kpspmviqnkisqpnsnik
kikllspflvttinpstlh*LSSLTQLSLLVSKLKVTPKTPSKTSTPPSPSDHVQTSLFQ
SSIDSWINKSSYPPSTLPPQNYPLLVMVTVDLKASEKAPSFNVGYLRPRPALSRI---

---KLLILINKMNPGLYADLXKPTADFIKKDFAETFKLDTTFKGKYGSIVAVTDIKDSGV
VASIQPKADFTKYLGKVSNGNFTVDTNGVKKGEFTIENIIPGLKAVANGDSKQNFSTEFQ
YKKDKIAFTLFGHNNKSFNTSLAFLINPTFSVGVQAEGNAKNTLKNVNATITIRPRPDVF
VSIVDRFMDKQILLSTLYTATSKLSFAGDVTVDLKASEKAPSFNVG

Frame A:
qsf*y**tk*tqvstpi*pnqllisskrisqkpsnsippskanmvqllqslilktvvllp
qfnqklispnisvksqmvtllsipmv*rkvnsplkilfqv*kpspmviqnkisqpnsnik
kikllspflvttinpstlh*LSSLTQLSLLVSKLKVTPKTPSKTSTPPSPSDHVQTSLFQ
SSIDSWINKSSYPPSTLPPQNYPLLVMVTVDLKASEKAPSFNVGYLRPRPALSRI---

---qsf*y**tk*tqvstpixpnqllisskrisqkpsnsippskanmvqllqslilktvv
llpqfnqklispnisvksqmvtllsipmv*rkvnsplkilfqv*kpspmviqnkisqpns
nikkikllspflvttinpstlh*lssltqlsllvsklkvtpktpsktstppspsdhvqts
lfqssidswinkssyppstlppqnypllvmllstskplkkhhhstl

Frame B:
kafninkqneprslrrfnqtnc*fhqkgfrrnlqtryhlqrqiwfnccsh*y*rqwcccl
nstks*fhqisr*slkw*lycryqwcker*ihh*kyysrfksrrqw*fktkflnripi*k
r*ncfhpfwsqq*ilqhfisfph*pnflcwcps*r*rqkhpqkrqrhhhhqttsrrlcfn
rr*ihg*tnplihplhchlkiilcw*wllstskplkkhhhstlgtfgrdpp*ae---

---kafninkqneprslrrfxqtnc*fhqkgfrrnlqtryhlqrqiwfnccsh*y*rqwc
cclnstks*fhqisr*slkw*lycryqwcker*ihh*kyysrfksrrqw*fktkflnrip
i*kr*ncfhpfwsqq*ilqhfisfph*pnflcwcps*r*rqkhpqkrqrhhhhqttsrrl
cfnrr*ihg*tnplihplhchlkiilcw*cycrpqsl*kstiiqrw

Frame C:
kllilinkmnpglyadltkptadfikkdfaetfkldttfkgkygsivavtdikdsgvvas
iqpkadftkylgkvsngnftvdtngvkkgeftieniipglkavangdskqnfstefqykk
dkiaftlfghnnksfntslaflinptfsvgvqaegnakntlknvnatitirprpdvfvsi
vdrfmdkqillstlytatsklsfagdgycrpqsl*kstiiqrwvpsaatrpkpn---

---KLLILINKMNPGLYADLXKPTADFIKKDFAETFKLDTTFKGKYGSIVAVTDIKDSGV
VASIQPKADFTKYLGKVSNGNFTVDTNGVKKGEFTIENIIPGLKAVANGDSKQNFSTEFQ
YKKDKIAFTLFGHNNKSFNTSLAFLINPTFSVGVQAEGNAKNTLKNVNATITIRPRPDVF
VSIVDRFMDKQILLSTLYTATSKLSFAGDVTVDLKASEKAPSFNVG

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1144 (FC-IC1144Q) /CSM/FC-IC/FC-IC1144Q.Seq.d/                  2682   0.0
FC-BO09 (FC-BO09Q) /CSM/FC/FC-BO/FC-BO09Q.Seq.d/                     1324   0.0
VHF382 (VHF382Q) /CSM/VH/VHF3-D/VHF382Q.Seq.d/                       1304   0.0
VSD191 (VSD191Q) /CSM/VS/VSD1-D/VSD191Q.Seq.d/                       1245   0.0
VFL679 (VFL679Q) /CSM/VF/VFL6-D/VFL679Q.Seq.d/                       1152   0.0
VHA129 (VHA129Q) /CSM/VH/VHA1-B/VHA129Q.Seq.d/                       1027   0.0
VFD833 (VFD833Q) /CSM/VF/VFD8-B/VFD833Q.Seq.d/                       1021   0.0
VSJ651 (VSJ651Q) /CSM/VS/VSJ6-C/VSJ651Q.Seq.d/                        839   0.0
VSC676 (VSC676Q) /CSM/VS/VSC6-D/VSC676Q.Seq.d/                        648   0.0
VFB643 (VFB643Q) /CSM/VF/VFB6-B/VFB643Q.Seq.d/                        579   e-164

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M96668|M96668.1 Dictyostelium discoideum porin mRNA, complete cds.  1322   0.0    2
AC115682|AC115682.2 Dictyostelium discoideum chromosome 2 map 4101105-4158643 strain AX4, complete sequence.  1065   0.0    8
AL034557|AL034557.8 Plasmodium falciparum MAL4P1.                  34   0.023  15
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   0.037  16
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   0.11   13
AC109566|AC109566.5 Rattus norvegicus clone CH230-196F10, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    36   0.17   7
AC116978|AC116978.1 Dictyostelium discoideum chromosome 2 map 4846697-4874480 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    34   0.19   7
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    30   0.21   10
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence.    32   0.33   15
AL929351|AL929351.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4.    34   0.36   12

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q01501) RecName: Full=Mitochondrial outer membrane protein pori...   422   e-116
AY835404_1(AY835404|pid:none) Brassica napus clone BnY2H23 porin...    49   3e-04
BT052614_1(BT052614|pid:none) Medicago truncatula clone MTYFD_FE...    47   0.001
AY316740_1(AY316740|pid:none) Lotus corniculatus var. japonicus ...    46   0.003
AF139498_1(AF139498|pid:none) Prunus armeniaca porin (mPOR) mRNA...    45   0.006
AC097112_9(AC097112|pid:none) Oryza sativa (japonica cultivar-gr...    45   0.006
X94305_1(X94305|pid:none) S.tuberosum mRNA for POM30 protein.          44   0.010
EF146163_1(EF146163|pid:none) Populus trichocarpa clone WS0115_O...    44   0.010
AB013390_5(AB013390|pid:none) Arabidopsis thaliana genomic DNA, ...    44   0.010
AF178951_1(AF178951|pid:none) Zea mays voltage-dependent anion c...    43   0.030

 psg: 0.87  gvh: 0.45  alm: 0.42  top: 0.73  tms: 0.00  mit: 0.41  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 32.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for FC-IC1144 is mit

>FC-IC1144F.Seq
CAAAGCTTTTAATATTAATAAACAAAATGAACCCAGGTCTCTACGCCGATTTAACCAAAC
CAACTGCTGATTTCATCAAAAAGGATTTCGCAGAAACCTTCAAACTCGATACCACCTTCA
AAGGCAAATATGGTTCAATTGTTGCAGTCACTGATATTAAAGACAGTGGTGTTGTTGCCT
CAATTCAACCAAAAGCTGATTTCACCAAATATCTCGGTAAAGTCTCAAATGGTAACTTTA
CTGTCGATACCAATGGTGTAAAGAAAGGTGAATTCACCATTGAAAATATTATTCCAGGTT
TAAAAGCCGTCGCCAATGGTGATTCAAAACAAAATTTCTCAACCGAATTCCAATATAAAA
AAGATAAAATTGCTTTCACCCTTTTTGGTCACAACAATAAATCCTTCAACACTTCATTAG
CTTTCCTCATTAACCCAACTTTCTCTGTTGGTGTCCAAGCTGAAGGTAACGCCAAAAACA
CCCTCAAAAACGTCAACGCCACCATCACCATCAGACCACGTCCAGACGTCTTTGTTTCAA
TCGTCGATAGATTCATGGATAAACAAATCCTCTTATCCACCCTCTACACTGCCACCTCAA
AATTATCCTTTGCTGGTGATGGTTACTGTCGACCTCAAAGCCTCTGAAAAAGCACCATCA
TTCAACGTTGGGTACCTTCGGCCGCGACCCGCCCTAAGCCGAATTNNNNNNNNNN

>FC-IC1144Z.Seq
NNNNNNNNNNCAAAGCTTTTAATATTAATAAACAAAATGAACCCAGGTCTCTACGCCGAT
TTANCCAAACCAACTGCTGATTTCATCAAAAAGGATTTCGCAGAAACCTTCAAACTCGAT
ACCACCTTCAAAGGCAAATATGGTTCAATTGTTGCAGTCACTGATATTAAAGACAGTGGT
GTTGTTGCCTCAATTCAACCAAAAGCTGATTTCACCAAATATCTCGGTAAAGTCTCAAAT
GGTAACTTTACTGTCGATACCAATGGTGTAAAGAAAGGTGAATTCACCATTGAAAATATT
ATTCCAGGTTTAAAAGCCGTCGCCAATGGTGATTCAAAACAAAATTTCTCAACCGAATTC
CAATATAAAAAAGATAAAATTGCTTTCACCCTTTTTGGTCACAACAATAAATCCTTCAAC
ACTTCATTAGCTTTCCTCATTAACCCAACTTTCTCTGTTGGTGTCCAAGCTGAAGGTAAC
GCCAAAAACACCCTCAAAAACGTCAACGCCACCATCACCATCAGACCACGTCCAGACGTC
TTTGTTTCAATCGTCGATAGATTCATGGATAAACAAATCCTCTTATCCACCCTCTACACT
GCCACCTCAAAATTATCCTTTGCTGGTGATGTTACTGTCGACCTCAAAGCCTCTGAAAAA
GCACCATCATTCAACGTTGGT

>FC-IC1144P.Seq
CAAAGCTTTTAATATTAATAAACAAAATGAACCCAGGTCTCTACGCCGATTTAACCAAAC
CAACTGCTGATTTCATCAAAAAGGATTTCGCAGAAACCTTCAAACTCGATACCACCTTCA
AAGGCAAATATGGTTCAATTGTTGCAGTCACTGATATTAAAGACAGTGGTGTTGTTGCCT
CAATTCAACCAAAAGCTGATTTCACCAAATATCTCGGTAAAGTCTCAAATGGTAACTTTA
CTGTCGATACCAATGGTGTAAAGAAAGGTGAATTCACCATTGAAAATATTATTCCAGGTT
TAAAAGCCGTCGCCAATGGTGATTCAAAACAAAATTTCTCAACCGAATTCCAATATAAAA
AAGATAAAATTGCTTTCACCCTTTTTGGTCACAACAATAAATCCTTCAACACTTCATTAG
CTTTCCTCATTAACCCAACTTTCTCTGTTGGTGTCCAAGCTGAAGGTAACGCCAAAAACA
CCCTCAAAAACGTCAACGCCACCATCACCATCAGACCACGTCCAGACGTCTTTGTTTCAA
TCGTCGATAGATTCATGGATAAACAAATCCTCTTATCCACCCTCTACACTGCCACCTCAA
AATTATCCTTTGCTGGTGATGGTTACTGTCGACCTCAAAGCCTCTGAAAAAGCACCATCA
TTCAACGTTGGGTACCTTCGGCCGCGACCCGCCCTAAGCCGAATT----------CAAAG
CTTTTAATATTAATAAACAAAATGAACCCAGGTCTCTACGCCGATTTANCCAAACCAACT
GCTGATTTCATCAAAAAGGATTTCGCAGAAACCTTCAAACTCGATACCACCTTCAAAGGC
AAATATGGTTCAATTGTTGCAGTCACTGATATTAAAGACAGTGGTGTTGTTGCCTCAATT
CAACCAAAAGCTGATTTCACCAAATATCTCGGTAAAGTCTCAAATGGTAACTTTACTGTC
GATACCAATGGTGTAAAGAAAGGTGAATTCACCATTGAAAATATTATTCCAGGTTTAAAA
GCCGTCGCCAATGGTGATTCAAAACAAAATTTCTCAACCGAATTCCAATATAAAAAAGAT
AAAATTGCTTTCACCCTTTTTGGTCACAACAATAAATCCTTCAACACTTCATTAGCTTTC
CTCATTAACCCAACTTTCTCTGTTGGTGTCCAAGCTGAAGGTAACGCCAAAAACACCCTC
AAAAACGTCAACGCCACCATCACCATCAGACCACGTCCAGACGTCTTTGTTTCAATCGTC
GATAGATTCATGGATAAACAAATCCTCTTATCCACCCTCTACACTGCCACCTCAAAATTA
TCCTTTGCTGGTGATGTTACTGTCGACCTCAAAGCCTCTGAAAAAGCACCATCATTCAAC
GTTGGT