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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1128
Library FC-IC
(Link to library)
Clone ID FC-IC1128
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12249-1
Original site URL
Representative seq. ID FC-IC1128E
(Link to Original site)
Representative DNA sequence 
>FC-IC1128 (FC-IC1128Q) /CSM/FC-IC/FC-IC1128Q.Seq.d/
CAGAAAAGCAATTAAGTTGTTGTCTCGATTTAATGAGACGTTTACCACCATCTCAAATTG
AAGATAATTTAGCAGGTCTCCTTGATCTTGTCCCAGATCTCACTGAAGACCTTTTATCAT
CAATTGATCAACCACTCAAGGTTGCTTATGATGCAGTTTCAAAAAAAGATTATTTATTAT
GTGATTACAATAGAGATGCTGATTCATACAGATCACCATGGTCAAACAAATATGATCCAC
CATTAAGTGGTGCATGTTATCCATCATCAAAATTAAGAGATATTGAAGTTCAAGCTAATG
AAATTTTTGAAATTTATCTTAACTTATATTTTGAAGGTGGTGTTTCATCTGTTTATTGTT
GGGATCTCGATGATAATTTCGCTGCTGTAGTTTTAATGAAAAAAACTCAAGATCAATCTA
AAAAAGGTCAACCAATGAGAGGT
sequence update 2001.11.10
Translated Amino Acid sequence 
EKQLSCCLDLMRRLPPSQIEDNLAGLLDLVPDLTEDLLSSIDQPLKVAYDAVSKKDYLLC
DYNRDADSYRSPWSNKYDPPLSGACYPSSKLRDIEVQANEIFEIYLNLYFEGGVSSVYCW
DLDDNFAAVVLMKKTQDQSKKGQPMRG
Translated Amino Acid sequence (All Frames) 
Frame A:
qksn*vvvsi**dvyhhlklkii*qvslilsqislktfyhqlinhsrllmmqfqkkiiyy
vitiemlihtdhhgqtnmihh*vvhvihhqn*eilkfklmkflkfiltyilkvvfhlfiv
gismiisll*f**kklkinlkkvnq*e


Frame B:
rkaikllsrfnetfttisn*r*fsrsp*scprsh*rpfiin*sttqgcl*csfkkrlfim
*lq*rc*fiqitmvkqi*stikwcmlsiikikry*sss**nf*nls*lif*rwcficlll
gsr**frccsfneknsrsi*krstner


Frame C:
EKQLSCCLDLMRRLPPSQIEDNLAGLLDLVPDLTEDLLSSIDQPLKVAYDAVSKKDYLLC
DYNRDADSYRSPWSNKYDPPLSGACYPSSKLRDIEVQANEIFEIYLNLYFEGGVSSVYCW
DLDDNFAAVVLMKKTQDQSKKGQPMRG
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ127 (SSJ127Q) /CSM/SS/SSJ1-B/SSJ127Q.Seq.d/                        795   0.0
FC-IC1128 (FC-IC1128Q) /CSM/FC-IC/FC-IC1128Q.Seq.d/                   795   0.0
SSA656 (SSA656Q) /CSM/SS/SSA6-C/SSA656Q.Seq.d/                        783   0.0
VSG245 (VSG245Q) /CSM/VS/VSG2-B/VSG245Q.Seq.d/                        771   0.0
VFF819 (VFF819Q) /CSM/VF/VFF8-A/VFF819Q.Seq.d/                        533   e-151
VFD371 (VFD371Q) /CSM/VF/VFD3-C/VFD371Q.Seq.d/                        446   e-124
SSK848 (SSK848Q) /CSM/SS/SSK8-B/SSK848Q.Seq.d/                        410   e-114
SSH682 (SSH682Q) /CSM/SS/SSH6-D/SSH682Q.Seq.d/                        359   2e-98
SSL728 (SSL728Q) /CSM/SS/SSL7-B/SSL728Q.Seq.d/                        190   1e-47
SSJ183 (SSJ183Q) /CSM/SS/SSJ1-D/SSJ183Q.Seq.d/                        113   2e-24
own update 2001.11.19
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M25131|M25131.1 D.discoideum CAP32 protein, complete cds.         458   0.0    3
BQ701924|BQ701924.1 NXSI_122_C04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA clone NXSI_122_C04 5', mRNA sequence.    76   4e-10  1
CF233520|CF233520.1 PtaJXO0024E7E0709 Poplar cDNA library from young opposite xylem Populus x canescens cDNA 5', mRNA sequence.    54   7e-07  2
CA821313|CA821313.1 RSH01D01 two-month-old roots from clone 'Beaupre' grown for 19 days under restricted irrigation Populus balsamifera subsp. trichocarpa x Populus deltoides cDNA 5', mRNA sequence.    54   7e-07  2
CF234179|CF234179.1 PtaJXO3D9D0907 Poplar cDNA library from young opposite xylem Populus x canescens cDNA 5', mRNA sequence.    54   7e-07  2
BU862607|BU862607.1 S017G10 Populus imbibed seed cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.    54   8e-07  2
BU834615|BU834615.1 T063E11 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.    54   8e-07  2
BF272695|BF272695.1 GA__Eb0015K12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0015K12f, mRNA sequence.    64   2e-06  1
CA852131|CA852131.1 E03F05_F05_11.ab1 cDNA Peking library 6, 8 day SCN3 Glycine max cDNA clone E03F05 5', mRNA sequence.    60   3e-05  1
BG509969|BG509969.1 sac69h10.y1 Gm-c1072 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1072-763 5' similar to SW:CAPB_HUMAN P47756 F-ACTIN CAPPING PROTEIN BETA SUBUNIT ;, mRNA sequence.    60   3e-05  1
dna update 2003.11.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P13021) RecName: Full=F-actin-capping protein subunit beta; Alt...   305   4e-82
CR861078_1(CR861078|pid:none) Pongo abelii mRNA; cDNA DKFZp459M1...   207   1e-52
AY890783_1(AY890783|pid:none) Synthetic construct Homo sapiens c...   207   1e-52
AY888202_1(AY888202|pid:none) Synthetic construct Homo sapiens c...   207   1e-52
AL035413_2(AL035413|pid:none) Human DNA sequence from clone RP4-...   207   1e-52
(Q5R507) RecName: Full=F-actin-capping protein subunit beta; Alt...   207   1e-52
(P47757) RecName: Full=F-actin-capping protein subunit beta; Alt...   207   1e-52
(P79136) RecName: Full=F-actin-capping protein subunit beta; Alt...   207   1e-52
BC041233_1(BC041233|pid:none) Xenopus laevis capping protein bet...   207   1e-52
EF011869_1(EF011869|pid:none) Xenopus laevis capping protein bet...   207   1e-52
protein update 2009. 7. 1
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for FC-IC1128 is cyt
5' end seq. ID FC-IC1128F
5' end seq. 
>FC-IC1128F.Seq
CAGAAAAGCAATTAAGTTGTTGTCTCGATTTAATGAGACGTTTACCACCATCTCAAATTG
AAGATAATTTAGCAGGTCTCCTTGATCTTGTCCCAGATCTCACTGAAGACCTTTTATCAT
CAATTGATCAACCACTCAAGGTTGCTTATGATGCAGTTTCAAAAAAAGATTATTTATTAT
GTGATTACAATAGAGATGCTGATTCATACAGATCACCATGGTCAAACAAATATGATCCAC
CATTAAGTGGTGCATGTTATCCATCATCAAAATTAAGAGATATTGAAGTTCAAGCTAATG
AAATTTTTGAAATTTATCTTAACTTATATTTTGAAGGTGGTGTTTCATCTGTTTATTGTT
GGGATCTCGATGATAATTTCGCTGCTGTAGTTTTAATGAAAAAAACTCAAGATCAATCTA
AAAAAGGTCAACCAATGAGAGGTNNNNNNNNNN
Length of 5' end seq. 453
3' end seq. ID FC-IC1128Z
3' end seq. 
>FC-IC1128Z.Seq
NNNNNNNNNNCAGAAAAGCAATTAAGTTGTTGTCTCGATTTAATGAGACGTTTACCACCA
TCTCAAATTGAAGATAATTTAGCAGGTCTCCTTGATCTTGTCCCAGATCTCACTGAAGAC
CTTTTATCATCAATTGATCAACCACTCAAGGTTGCTTATGATGCAGTTTCAAAAAAAGAT
TATTTATTATGTGATTACAATAGAGATGCTGATTCATACAGATCACCATGGTCAAACAAA
TATGATCCACCATTAAGTGGTGCATGTTATCCATCATCAAAATTAAGAGATATTGAAGTT
CAAGCTAATGAAATTTTTGAAATTTATCTTAACTTATATTTTGAAGGTGGTGTTTCATCT
GTTTATTGTTGGGATCTCGATGATAATTTCGCTGCTGTAGTTTTAATGAAAAAAACTCAA
GATCAATCTAAAAAAGGTCAACCAATGAGAGGT
Length of 3' end seq. 453
Connected seq. ID FC-IC1128P
Connected seq. 
>FC-IC1128P.Seq
CAGAAAAGCAATTAAGTTGTTGTCTCGATTTAATGAGACGTTTACCACCATCTCAAATTG
AAGATAATTTAGCAGGTCTCCTTGATCTTGTCCCAGATCTCACTGAAGACCTTTTATCAT
CAATTGATCAACCACTCAAGGTTGCTTATGATGCAGTTTCAAAAAAAGATTATTTATTAT
GTGATTACAATAGAGATGCTGATTCATACAGATCACCATGGTCAAACAAATATGATCCAC
CATTAAGTGGTGCATGTTATCCATCATCAAAATTAAGAGATATTGAAGTTCAAGCTAATG
AAATTTTTGAAATTTATCTTAACTTATATTTTGAAGGTGGTGTTTCATCTGTTTATTGTT
GGGATCTCGATGATAATTTCGCTGCTGTAGTTTTAATGAAAAAAACTCAAGATCAATCTA
AAAAAGGTCAACCAATGAGAGGT----------CAGAAAAGCAATTAAGTTGTTGTCTCG
ATTTAATGAGACGTTTACCACCATCTCAAATTGAAGATAATTTAGCAGGTCTCCTTGATC
TTGTCCCAGATCTCACTGAAGACCTTTTATCATCAATTGATCAACCACTCAAGGTTGCTT
ATGATGCAGTTTCAAAAAAAGATTATTTATTATGTGATTACAATAGAGATGCTGATTCAT
ACAGATCACCATGGTCAAACAAATATGATCCACCATTAAGTGGTGCATGTTATCCATCAT
CAAAATTAAGAGATATTGAAGTTCAAGCTAATGAAATTTTTGAAATTTATCTTAACTTAT
ATTTTGAAGGTGGTGTTTCATCTGTTTATTGTTGGGATCTCGATGATAATTTCGCTGCTG
TAGTTTTAATGAAAAAAACTCAAGATCAATCTAAAAAAGGTCAACCAATGAGAGGT
Length of connected seq. 886
Full length Seq ID FC-IC1128E
Full length Seq. 
>FC-IC1128E.Seq
CAGAAAAGCAATTAAGTTGTTGTCTCGATTTAATGAGACGTTTACCACCATCTCAAATTG
AAGATAATTTAGCAGGTCTCCTTGATCTTGTCCCAGATCTCACTGAAGACCTTTTATCAT
CAATTGATCAACCACTCAAGGTTGCTTATGATGCAGTTTCAAAAAAAGATTATTTATTAT
GTGATTACAATAGAGATGCTGATTCATACAGATCACCATGGTCAAACAAATATGATCCAC
CATTAAGTGGTGCATGTTATCCATCATCAAAATTAAGAGATATTGAAGTTCAAGCTAATG
AAATTTTTGAAATTTATCTTAACTTATATTTTGAAGGTGGTGTTTCATCTGTTTATTGTT
GGGATCTCGATGATAATTTCGCTGCTGTAGTTTTAATGAAAAAAACTCAAGATCAATCTA
AAAAAGGTCAACCAATGAGAGGT
Length of full length seq. 443