FC-IC1118
Library FC-IC
(Link to library)
Clone ID FC-IC1118
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID FC-IC1118E
(Link to Original site)
Representative DNA sequence
>FC-IC1118 (FC-IC1118Q) /CSM/FC-IC/FC-IC1118Q.Seq.d/
ACTNTATACTGTAACTGAAACACCAGTATCCAATTTAAGAACACTTTTAGATGCTGAACC
AACAATTGTTGAATCATANCCAGGTCAAGATATTCAACAATTTGAAGTTAATCAATTTTC
AGATTTAACAGCATCAGAGTTTAGTAATATTTATGCCGGTGCAGATGCATCATTAGCTAT
TTCTGAAGTAGCAGCATCAACTTTATCATACTGGTGCCATTGTTGGTATTGCTNGTTGGT
GGTAGTGTTGCACTTATTGGAGCTACTGCTGCAACTGTTTTAATTGTTAAAAAGAAGAGA
CAAAACAAAAAACCACAAGTTTCTGAACCAATTGCAACAACTCAAGATGTTAAAATGAAA
CCAACCAATGGTATAGATCTTTTAAATCGT
sequence update 2001.11.10
Translated Amino Acid sequence
LYTVTETPVSNLRTLLDAEPTIVESXPGQDIQQFEVNQFSDLTASEFSNIYAGADASLAI
SEVAASTLSYWCHCWYCXLVVVLHLLELLLQLF*llkrrdktknhkflnqlqqlkmlk*n
qpmv*if*i


Translated Amino Acid sequence (All Frames)
Frame A:
txycn*ntsiqfkntfrc*tnnc*iixrsrysti*s*sifrfnsirv**ylcrcrciisy
f*sssinfiilvpllvllvggsvaligataatvlivkkkrqnkkpqvsepiattqdvkmk
ptngidllnr


Frame B:
LYTVTETPVSNLRTLLDAEPTIVESXPGQDIQQFEVNQFSDLTASEFSNIYAGADASLAI
SEVAASTLSYWCHCWYCXLVVVLHLLELLLQLF*llkrrdktknhkflnqlqqlkmlk*n
qpmv*if*i


Frame C:
xil*lkhqypi*ehf*mlnqqllnhxqvkifnnlklinfqi*qhqslvifmpvqmhh*lf
lk*qhqlyhtgaivgiaxww*cctywsyccncfnc*keetkqkttsf*tncnnsrc*net
nqwyrsfks


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC1118 (FC-IC1118Q) /CSM/FC-IC/FC-IC1118Q.Seq.d/ 755 0.0
FC-IC1408 (FC-IC1408Q) /CSM/FC-IC/FC-IC1408Q.Seq.d/ 724 0.0
FC-IC1375 (FC-IC1375Q) /CSM/FC-IC/FC-IC1375Q.Seq.d/ 724 0.0
FC-IC0991 (FC-IC0991Q) /CSM/FC-IC/FC-IC0991Q.Seq.d/ 724 0.0
FC-IC0916 (FC-IC0916Q) /CSM/FC-IC/FC-IC0916Q.Seq.d/ 724 0.0
FC-IC0888 (FC-IC0888Q) /CSM/FC-IC/FC-IC0888Q.Seq.d/ 724 0.0
FC-IC0797 (FC-IC0797Q) /CSM/FC-IC/FC-IC0797Q.Seq.d/ 724 0.0
FC-IC0224 (FC-IC0224Q) /CSM/FC-IC/FC-IC0224Q.Seq.d/ 718 0.0
FC-IC1257 (FC-IC1257Q) /CSM/FC-IC/FC-IC1257Q.Seq.d/ 716 0.0
FC-IC0201 (FC-IC0201Q) /CSM/FC-IC/FC-IC0201Q.Seq.d/ 716 0.0

own update 2001.11.19
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AW686276|AW686276.2 NF036A10NR1F1000 Nodulated root Medicago truncatula cDNA clone NF036A10NR 5', mRNA sequence. 40 0.018 2
AC015943|AC015943.7 Homo sapiens chromosome 17, clone RP11-581B19, complete sequence. 34 0.055 5
AE016949|AE016949.1 Enterococcus faecalis V583, section 3 of 11 of the complete genome. 34 0.084 7
AL929586|AL929586.19 Zebrafish DNA sequence from clone CH211-188I17. 38 0.13 3
AC133131|AC133131.4 Rattus norvegicus clone CH230-77J17, WORKING DRAFT SEQUENCE, 1 ordered piece. 40 0.27 4
AC109484|AC109484.2 Homo sapiens chromosome 5 clone RP11-514A16, complete sequence. 40 0.28 5
AC099704|AC099704.2 Mus musculus clone RP23-256A2, WORKING DRAFT SEQUENCE, 3 unordered pieces. 46 0.34 1
AC131773|AC131773.3 Mus musculus BAC clone RP24-308A19 from chromosome 15, complete sequence. 46 0.34 1
BX323864|BX323864.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-218K4. 36 0.42 7
AC123596|AC123596.12 Medicago truncatula clone mth1-17n5, complete sequence. 34 0.59 4
dna update 2003.11.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AP007255_435(AP007255|pid:none) Magnetospirillum magneticum AMB-... 32 5.3
EF530139_1(EF530139|pid:none) Actinidia eriantha actinidin Act4a... 32 7.0
AF083753_1(AF083753|pid:none) Arabidopsis thaliana clone sps565 ... 32 9.1
DQ813662_112(DQ813662|pid:none) Anticarsia gemmatalis nucleopoly... 32 9.1
AB016870_9(AB016870|pid:none) Arabidopsis thaliana genomic DNA, ... 32 9.1

protein update 2009. 2.28
PSORT

psg: 0.75 gvh: 0.40 alm: 0.26 top: 0.40 tms: 0.07 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.07 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
16.0 %: nuclear
12.0 %: endoplasmic reticulum
12.0 %: plasma membrane
12.0 %: vesicles of secretory system
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for FC-IC1118 is cyt

5' end seq. ID FC-IC1118F
5' end seq.
>FC-IC1118F.Seq
ACTCTATACTGTAACTGAAACACCAGTATCCAATTTAAGAACACTTTTAGATGCTGAACC
AACAATTGTTGAATCATATCCAGGTCAAGATATTCAACAATTTGAAGTTAATCAATTTTC
AGATTTAACAGCATCAGAGTTTAGTAATATTTATGCCGGTGCAGATGCATCATTAGCTAT
TTCTGAAGTAGCAGCATCAACTTTATCAACTGGTGCCATTGTTGGTATTGCAGTTGGTGG
TAGTGTTGCACTTATTGGAGCTACTGCTGCAACTGTTTTAATTGTTAAAAAGAAGAGACA
AAACAAAAAACCACAAGTTTCTGAACCAATTGCAACAACTCAAGATGTTAAAATGAAACC
AACCAATGGTATAGATCTTTTAAATCGTNNNNNNNNNN
Length of 5' end seq. 398
3' end seq. ID FC-IC1118Z
3' end seq.
>FC-IC1118Z.Seq
NNNNNNNNNNACTATATACTGTAACTGAAACACCAGTATCCAATTTAAGAACACTTTTAG
ATGNTGAACCAACAATTGTTGAATCATACCCAGGTCAAGATATTCAACAATTTGAAGTTA
ATCAATTTTCAGATTTANCAGCATCAGAGTTTAGTAATATTTATGCCGGTGCAGATGCAT
CATTAGCTATTTCTGAAGTAGCAGCATCAACTTTATCATANTGGTGCCATTGTTGGTATT
GCTGGTTGGTGGTAGTGTTGCACTTATTGGAGCNANTGCTGCANCTGTTTTAATTGTTAA
AAAGAAGAGACAAAACNAANAACCACAAGTTTCTGAACCAATTGCAACAACTCAAGATGT
TAAAATGAAACCAACCAATGGTATAGATCTTTTAAATCGT
Length of 3' end seq. 400
Connected seq. ID FC-IC1118P
Connected seq.
>FC-IC1118P.Seq
ACTCTATACTGTAACTGAAACACCAGTATCCAATTTAAGAACACTTTTAGATGCTGAACC
AACAATTGTTGAATCATATCCAGGTCAAGATATTCAACAATTTGAAGTTAATCAATTTTC
AGATTTAACAGCATCAGAGTTTAGTAATATTTATGCCGGTGCAGATGCATCATTAGCTAT
TTCTGAAGTAGCAGCATCAACTTTATCAACTGGTGCCATTGTTGGTATTGCAGTTGGTGG
TAGTGTTGCACTTATTGGAGCTACTGCTGCAACTGTTTTAATTGTTAAAAAGAAGAGACA
AAACAAAAAACCACAAGTTTCTGAACCAATTGCAACAACTCAAGATGTTAAAATGAAACC
AACCAATGGTATAGATCTTTTAAATCGT----------ACTATATACTGTAACTGAAACA
CCAGTATCCAATTTAAGAACACTTTTAGATGNTGAACCAACAATTGTTGAATCATACCCA
GGTCAAGATATTCAACAATTTGAAGTTAATCAATTTTCAGATTTANCAGCATCAGAGTTT
AGTAATATTTATGCCGGTGCAGATGCATCATTAGCTATTTCTGAAGTAGCAGCATCAACT
TTATCATANTGGTGCCATTGTTGGTATTGCTGGTTGGTGGTAGTGTTGCACTTATTGGAG
CNANTGCTGCANCTGTTTTAATTGTTAAAAAGAAGAGACAAAACNAANAACCACAAGTTT
CTGAACCAATTGCAACAACTCAAGATGTTAAAATGAAACCAACCAATGGTATAGATCTTT
TAAATCGT
Length of connected seq. 778
Full length Seq ID FC-IC1118E
Full length Seq.
>FC-IC1118E.Seq
ACTNTATACTGTAACTGAAACACCAGTATCCAATTTAAGAACACTTTTAGATGCTGAACC
AACAATTGTTGAATCATANCCAGGTCAAGATATTCAACAATTTGAAGTTAATCAATTTTC
AGATTTAACAGCATCAGAGTTTAGTAATATTTATGCCGGTGCAGATGCATCATTAGCTAT
TTCTGAAGTAGCAGCATCAACTTTATCATACTGGTGCCATTGTTGGTATTGCTNGTTGGT
GGTAGTGTTGCACTTATTGGAGCTACTGCTGCAACTGTTTTAATTGTTAAAAAGAAGAGA
CAAAACAAAAAACCACAAGTTTCTGAACCAATTGCAACAACTCAAGATGTTAAAATGAAA
CCAACCAATGGTATAGATCTTTTAAATCGT
Length of full length seq. 390