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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1095
Library FC-IC
(Link to library)
Clone ID FC-IC1095
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10067-1
Original site URL
Representative seq. ID FC-IC1095E
(Link to Original site)
Representative DNA sequence 
>FC-IC1095 (FC-IC1095Q) /CSM/FC-IC/FC-IC1095Q.Seq.d/
ACCAACGACTATTGTGACCCAATACTTGGANAATGCGTCCACTTTTCCAATGATACCATT
TGTTCAAATAAAGCAAGTAACTTCTCTACTTGTGTCCTAAGTGGAGTATGTGGAGAGTTT
GGCTGTAAATACGTAGAAGATAATTGCAATGATGGTAATCCATGCACAGATGATTATTGC
GATTTTAAAAACGGATGTGTTTCACAAAAAAACGATTGGAATTGTGATTCACTAAGTGCA
TGTTCCGAAGGTATATGT
sequence update 2001.11.10
Translated Amino Acid sequence 
TNDYCDPILGXCVHFSNDTICSNKASNFSTCVLSGVCGEFGCKYVEDNCNDGNPCTDDYC
DFKNGCVSQKNDWNCDSLSACSEGIC
Translated Amino Acid sequence (All Frames) 
Frame A:
TNDYCDPILGXCVHFSNDTICSNKASNFSTCVLSGVCGEFGCKYVEDNCNDGNPCTDDYC
DFKNGCVSQKNDWNCDSLSACSEGIC


Frame B:
pttivtqylxnastfpmipfvqikqvtsllvs*veyveslavnt*kiiammvihaqmiia
ilktdvfhkktigivih*vhvpkvy


Frame C:
qrll*pntwxmrplfq*yhlfk*sk*llylcpkwsmwrvwl*irrr*lq*w*smhr*llr
f*krmcftkkrlel*ftkcmfrrym
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1156 (FC-IC1156Q) /CSM/FC-IC/FC-IC1156Q.Seq.d/                   464   e-130
FC-IC1095 (FC-IC1095Q) /CSM/FC-IC/FC-IC1095Q.Seq.d/                   464   e-130
FC-IC0131 (FC-IC0131Q) /CSM/FC-IC/FC-IC0131Q.Seq.d/                   464   e-130
FC-IC1786 (FC-IC1786Q) /CSM/FC-IC/FC-IC1786Q.Seq.d/                   456   e-128
FC-IC1134 (FC-IC1134Q) /CSM/FC-IC/FC-IC1134Q.Seq.d/                   454   e-127
FC-IC0953 (FC-IC0953Q) /CSM/FC-IC/FC-IC0953Q.Seq.d/                   454   e-127
FC-IC0566 (FC-IC0566Q) /CSM/FC-IC/FC-IC0566Q.Seq.d/                   454   e-127
FC-IC1553 (FC-IC1553Q) /CSM/FC-IC/FC-IC1553Q.Seq.d/                   450   e-126
FC-IC1547 (FC-IC1547Q) /CSM/FC-IC/FC-IC1547Q.Seq.d/                   450   e-126
FC-IC1259 (FC-IC1259Q) /CSM/FC-IC/FC-IC1259Q.Seq.d/                   448   e-125
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.   165   3e-37  1
BX649339|BX649339.9 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  CTD-2248C21.    32   0.065  5
BW268891|BW268891.1 Ciona intestinalis cDNA, clone:cign051h06, 5' end, single read.    46   0.22   1
AV904559|AV904559.1 Ciona intestinalis cDNA, clone:rciad78n09, 3' end, single read.    46   0.22   1
BW124034|BW124034.1 Ciona intestinalis cDNA, clone:rcitb098k23, 3' end, single read.    46   0.22   1
AV857315|AV857315.1 Ciona intestinalis cDNA, clone:rcilv18b19, 3' end, single read.    46   0.22   1
BW114571|BW114571.1 Ciona intestinalis cDNA, clone:rcitb068a18, 3' end, single read.    46   0.22   1
BW181370|BW181370.1 Ciona intestinalis cDNA, clone:rciht022f13, 3' end, single read.    46   0.22   1
BW114739|BW114739.1 Ciona intestinalis cDNA, clone:rcitb068j01, 3' end, single read.    46   0.22   1
BW139043|BW139043.1 Ciona intestinalis cDNA, clone:rcign051h06, 3' end, single read.    46   0.22   1
dna update 2003.11.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S44208(S44208) extracellular matrix protein B - Dictyostelium mi...    54   1e-06
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 53   3e-06
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...    50   2e-05
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 50   3e-05
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                 50   3e-05
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...    47   2e-04
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell...    47   3e-04
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste...    47   3e-04
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                 45   6e-04
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 43   0.004
protein update 2009. 7. 1
PSORT 

 psg: 0.75  gvh: 0.57  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for FC-IC1095 is cyt
5' end seq. ID FC-IC1095F
5' end seq. 
>FC-IC1095F.Seq
ACCAACGACTNTTGTGACCCAATACTTGGAGAATGCGTCCACTTTTCCAATGATACCATT
TGTTCAAATAAAGCAAGTAACTTCTCTACTTGTGTCCTAAGTGGAGTATGTGGAGAGTTT
GGCTGTAAATACGTAGAAGATAATTGCAATGATGGTAATCCATGCACAGATGATTATTGC
GATTTTAAAAACGGATGTGTTTCACAAAAAAACGATTGGAATTGTGATTCACTAAGTGCA
TGTTCCGAAGGTATATGTNNNNNNNNNN
Length of 5' end seq. 268
3' end seq. ID FC-IC1095Z
3' end seq. 
>FC-IC1095Z.Seq
NNNNNNNNNNACCAACGNCTATTGTGACCCAATACTTGGATAATGCGTCCNCTTTTNCAA
TGATACCATTTGTTNNNATAAAGCAAGTAACTTCTCTACTTGTGTCCTAAGTGGAGTATG
TGGAGAGTTTGGCTGTAAATACGTAGAAGATAATTGCAATGATGGTAATCCATGCACAGA
TGATTATTGCGATTTTAAAAACGGATGTGTTTCACAAAAAAACGATTGGAATTGTGATTC
ACTAAGTGCATGTTCCGAAGGTATATGT
Length of 3' end seq. 268
Connected seq. ID FC-IC1095P
Connected seq. 
>FC-IC1095P.Seq
ACCAACGACTNTTGTGACCCAATACTTGGAGAATGCGTCCACTTTTCCAATGATACCATT
TGTTCAAATAAAGCAAGTAACTTCTCTACTTGTGTCCTAAGTGGAGTATGTGGAGAGTTT
GGCTGTAAATACGTAGAAGATAATTGCAATGATGGTAATCCATGCACAGATGATTATTGC
GATTTTAAAAACGGATGTGTTTCACAAAAAAACGATTGGAATTGTGATTCACTAAGTGCA
TGTTCCGAAGGTATATGT----------ACCAACGNCTATTGTGACCCAATACTTGGATA
ATGCGTCCNCTTTTNCAATGATACCATTTGTTNNNATAAAGCAAGTAACTTCTCTACTTG
TGTCCTAAGTGGAGTATGTGGAGAGTTTGGCTGTAAATACGTAGAAGATAATTGCAATGA
TGGTAATCCATGCACAGATGATTATTGCGATTTTAAAAACGGATGTGTTTCACAAAAAAA
CGATTGGAATTGTGATTCACTAAGTGCATGTTCCGAAGGTATATGT
Length of connected seq. 516
Full length Seq ID FC-IC1095E
Full length Seq. 
>FC-IC1095E.Seq
ACCAACGACTATTGTGACCCAATACTTGGANAATGCGTCCACTTTTCCAATGATACCATT
TGTTCAAATAAAGCAAGTAACTTCTCTACTTGTGTCCTAAGTGGAGTATGTGGAGAGTTT
GGCTGTAAATACGTAGAAGATAATTGCAATGATGGTAATCCATGCACAGATGATTATTGC
GATTTTAAAAACGGATGTGTTTCACAAAAAAACGATTGGAATTGTGATTCACTAAGTGCA
TGTTCCGAAGGTATATGT
Length of full length seq. 258