FC-IC1091
Library FC-IC
(Link to library)
Clone ID FC-IC1091
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>FC-IC1091 (FC-IC1091Q) /CSM/FC-IC/FC-IC1091Q.Seq.d/
ACCAATCTATGAAGGTTATGCCTTACCACATGCCATCTTACGTTTAGATTTAGCTGGTCG
TGATCTTACTGATTACATGATGAAAATCTTAACTGAACGTGGTTACTCATTCACCACCAC
TGCTGAAAGAGAAATCGTCAGAGATATCAAAGAAAAATTAGCCTACGTCGCCCTCGACTT
TGAAGCTGAAATGCAAACTGCTGCCTCATCATCAGCCCTCGAAAAATCATACGAATTACC
AGACGGTCAAGTCATCACCATTGGTAACGAACGTTTCCGTTGTCCAGAAGCCCTCTTCCA
ACCATCATTCTTAGGTATGGAATCAGCTGGTATCCACGAAACCACCTACAACTCCATCAT
GAAATGTGATGTTGATATCCGTAAAGATTTATACGGTAACGTCGTCTTATCCGGTGGTXX
XXXXXXXX
sequence update 2001.11. 5
Translated Amino Acid sequence
PIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDF
EAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIM
KCDVDIRKDLYGNVVLSG---


Translated Amino Acid sequence (All Frames)
Frame A:
tnl*rlclttchltfrfsws*sy*lhdenln*twllihhhc*krnrqryqrkislrrprl
*s*nanccliisprkiiritrrsshhhw*rtfplsrsplptiilrygiswyprnhlqlhh
em*c*yp*rfir*rrlirw---


Frame B:
PIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDF
EAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIM
KCDVDIRKDLYGNVVLSG---


Frame C:
qsmkvmpyhmpsyv*i*lvvillit**ks*lnvvthsppllkeksseiskkn*ptspstl
klkckllphhqpsknhtnyqtvkssplvtnvsvvqkpssnhhs*vwnqlvstkppttps*
nvmlisvkiytvtssypv---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHA591 (VHA591Q) /CSM/VH/VHA5-D/VHA591Q.Seq.d/ 829 0.0
VFO872 (VFO872Q) /CSM/VF/VFO8-C/VFO872Q.Seq.d/ 829 0.0
VFO530 (VFO530Q) /CSM/VF/VFO5-B/VFO530Q.Seq.d/ 829 0.0
VFN754 (VFN754Q) /CSM/VF/VFN7-C/VFN754Q.Seq.d/ 829 0.0
VFN186 (VFN186Q) /CSM/VF/VFN1-D/VFN186Q.Seq.d/ 829 0.0
VFM615 (VFM615Q) /CSM/VF/VFM6-A/VFM615Q.Seq.d/ 829 0.0
VFM419 (VFM419Q) /CSM/VF/VFM4-A/VFM419Q.Seq.d/ 829 0.0
VFL782 (VFL782Q) /CSM/VF/VFL7-D/VFL782Q.Seq.d/ 829 0.0
VFL472 (VFL472Q) /CSM/VF/VFL4-C/VFL472Q.Seq.d/ 829 0.0
VFL469 (VFL469Q) /CSM/VF/VFL4-C/VFL469Q.Seq.d/ 829 0.0

own update 2002.10. 7
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 779 0.0 2
X03281|X03281.1 Dictyostelium discoideum gene for actin A8. 773 0.0 1
M14146|M14146.1 D.discoideum actin 15 gene, complete cds. 757 0.0 1
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 757 0.0 1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 708 0.0 1
X03282|X03282.1 dictyostelium discoideum gene for actin A12. 615 e-172 1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 615 e-172 3
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 591 e-165 6
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 519 e-144 1
U25660|U25660.1 Dictyostelium discoideum actin gene, partial cds. 515 e-142 1
dna update 2003.12.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa... 278 4e-74
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti... 278 4e-74
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum) 278 4e-74
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp... 276 2e-73
(Q553U6) RecName: Full=Putative actin-22; &AC116305_3(AC116305|... 275 3e-73
(P02576) RecName: Full=Actin, plasmodial isoform; &ATFY(A29044;... 275 3e-73
EF455784_1(EF455784|pid:none) Hyperamoeba sp. ATCC PRA-39 actin ... 275 5e-73
AY294153_1(AY294153|pid:none) Platyamoeba placida actin mRNA, pa... 274 6e-73
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli... 274 8e-73
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1; 273 1e-72
protein update 2009. 5.21
PSORT

psg: 0.75 gvh: 0.41 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for FC-IC1091 is cyt

5' end seq. ID FC-IC1091F
5' end seq.
>FC-IC1091F.Seq
ACCAATCTATGAAGGTTATGCCTTACCACATGCCATCTTACGTTTAGATTTAGCTGGTCG
TGATCTTACTGATTACATGATGAAAATCTTAACTGAACGTGGTTACTCATTCACCACCAC
TGCTGAAAGAGAAATCGTCAGAGATATCAAAGAAAAATTAGCCTACGTCGCCCTCGACTT
TGAAGCTGAAATGCAAACTGCTGCCTCATCATCAGCCCTCGAAAAATCATACGAATTACC
AGACGGTCAAGTCATCACCATTGGTAACGAACGTTTCCGTTGTCCAGAAGCCCTCTTCCA
ACCATCATTCTTAGGTATGGAATCAGCTGGTATCCACGAAACCACCTACAACTCCATCAT
GAAATGTGATGTTGATATCCGTAAAGATTTATACGGTAACGTCGTCTTATCCGGTGGTNN
NNNNNNNN
Length of 5' end seq. 428
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -