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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1066
Library FC-IC
(Link to library)
Clone ID FC-IC1066
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16271-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>FC-IC1066 (FC-IC1066Q) /CSM/FC-IC/FC-IC1066Q.Seq.d/
ACTAAATTAAGTGGTTTAGGAGAAACTTGTGGCACCCCATTCACAGAATGCGCAGAACCA
TTCGCATGTCGTTCTGTTACAACCACCAAAGGTAATTTACAAACTTGTGCTATGCCAGAT
TATTTANGTTTTGGTGAAAGTTGTAATTCAGACTACCAATGTGGTAATGGTTTAACATGT
AATGAAGAGATTTGCTCATTGAAACCACACGTTATTTGTTCTAACGATGGTCAATGTCCA
TTTGGTCAATTCTGTAATGGTXXXXXXXXXX
sequence update 2001.11. 5
Translated Amino Acid sequence 
TKLSGLGETCGTPFTECAEPFACRSVTTTKGNLQTCAMPDYLXFGESCNSDYQCGNGLTC
NEEICSLKPHVICSNDGQCPFGQFCN---
Translated Amino Acid sequence (All Frames) 
Frame A:
TKLSGLGETCGTPFTECAEPFACRSVTTTKGNLQTCAMPDYLXFGESCNSDYQCGNGLTC
NEEICSLKPHVICSNDGQCPFGQFCN---


Frame B:
ln*vv*eklvaphsqnaqnhshvvllqppkviyklvlcqiixvlvkvviqttnvvmv*hv
mkrfah*nhtlfvltmvnvhlvnsvm---


Frame C:
*ikwfrrnlwhpihrmrrtirmsfcynhqr*ftnlcyarlfxfw*kl*frlpmw*wfnm*
*rdlliettrylf*rwsmsiwsil*w---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1066 (FC-IC1066Q) /CSM/FC-IC/FC-IC1066Q.Seq.d/                   511   e-144
FC-IC1758 (FC-IC1758Q) /CSM/FC-IC/FC-IC1758Q.Seq.d/                   504   e-142
FC-IC1685 (FC-IC1685Q) /CSM/FC-IC/FC-IC1685Q.Seq.d/                   504   e-142
FC-IC1502 (FC-IC1502Q) /CSM/FC-IC/FC-IC1502Q.Seq.d/                   504   e-142
FC-IC1367 (FC-IC1367Q) /CSM/FC-IC/FC-IC1367Q.Seq.d/                   504   e-142
FC-IC1366 (FC-IC1366Q) /CSM/FC-IC/FC-IC1366Q.Seq.d/                   504   e-142
FC-IC1304 (FC-IC1304Q) /CSM/FC-IC/FC-IC1304Q.Seq.d/                   504   e-142
FC-IC1238 (FC-IC1238Q) /CSM/FC-IC/FC-IC1238Q.Seq.d/                   504   e-142
FC-IC1210 (FC-IC1210Q) /CSM/FC-IC/FC-IC1210Q.Seq.d/                   504   e-142
FC-IC1165 (FC-IC1165Q) /CSM/FC-IC/FC-IC1165Q.Seq.d/                   504   e-142
own update 2001.11.18
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB079253|AB079253.1 Dictyostelium discoideum Dd-gdcA mRNA, complete cds.   504   e-139  1
AB079606|AB079606.1 Dictyostelium discoideum gene for gp64-like protein, complete cds.   504   e-139  1
AC108532|AC108532.6 Rattus norvegicus clone CH230-91F12, WORKING DRAFT SEQUENCE, 2 unordered pieces.    36   2.6    2
AC136224|AC136224.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006B22, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.    42   3.7    1
AC136227|AC136227.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0109A13, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.    42   3.7    1
BQ476544|BQ476544.1 curculio2d05.g Curculio glandium cDNA Curculio glandium cDNA clone curculio2d05 3', mRNA sequence.    40   15     1
BQ476270|BQ476270.1 curculio2e10.b Curculio glandium cDNA Curculio glandium cDNA clone curculio2e10 5', mRNA sequence.    40   15     1
BQ476190|BQ476190.1 curculio1d05.b Curculio glandium cDNA Curculio glandium cDNA clone curculio1d05 5', mRNA sequence.    40   15     1
BQ476736|BQ476736.1 curculio5h06.g Curculio glandium cDNA Curculio glandium cDNA clone curculio5h06 3', mRNA sequence.    40   15     1
BQ476527|BQ476527.1 curculio5h06.b Curculio glandium cDNA Curculio glandium cDNA clone curculio5h06 5', mRNA sequence.    40   15     1
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB079253_1(AB079253|pid:none) Dictyostelium discoideum Dd-gdcA m...   195   4e-49
AB027502_1(AB027502|pid:none) Polysphondylium pallidum gene for ...    44   0.002
T16840(T16840)hypothetical protein T10E10.4 - Caenorhabditis ele...    41   0.014
AP007166_483(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    41   0.014
U39644_2(U39644|pid:none) Caenorhabditis elegans cosmid T10E10, ...    41   0.014
CP001131_3388(CP001131|pid:none) Anaeromyxobacter sp. K, complet...    39   0.054
CP001359_3451(CP001359|pid:none) Anaeromyxobacter dehalogenans 2...    39   0.054
CP000251_3326(CP000251|pid:none) Anaeromyxobacter dehalogenans 2...    39   0.070
AP007166_484(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    38   0.12
S47645(S47645) tMDC I protein - crab-eating macaque  &X76637_1(X...    37   0.20
protein update 2009. 5.21
PSORT 

 psg: 0.77  gvh: 0.38  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for FC-IC1066 is cyt
5' end seq. ID FC-IC1066F
5' end seq. 
>FC-IC1066F.Seq
ACTAAATTAAGTGGTTTAGGAGAAACTTGTGGCACCCCATTCACAGAATGCGCAGAACCA
TTCGCATGTCGTTCTGTTACAACCACCAAAGGTAATTTACAAACTTGTGCTATGCCAGAT
TATTTANGTTTTGGTGAAAGTTGTAATTCAGACTACCAATGTGGTAATGGTTTAACATGT
AATGAAGAGATTTGCTCATTGAAACCACACGTTATTTGTTCTAACGATGGTCAATGTCCA
TTTGGTCAATTCTGTAATGGTNNNNNNNNNN
Length of 5' end seq. 271
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -