>FC-IC1048 (FC-IC1048Q) /CSM/FC-IC/FC-IC1048Q.Seq.d/
ACTATATAGCTAATATACGTTGATAATGTTATTTCATTTTTTAATTTTAAAGCTGTAAAT
GCAGTTACTAAGGTTGNTGCTACTCCTGTGACTCCAATTNTTTCCCATAATCCTTTATCT
AANNTTTTATTCATAACATCATAAGATAAATGAAAAAATGGTXXXXXXXXXX

ti*LIYVDNVISFFNFKAVNAVTKVXATPVTPIXSHNPLSXXLFITS*dk*kn---

Frame A:
ti*LIYVDNVISFFNFKAVNAVTKVXATPVTPIXSHNPLSXXLFITS*dk*kn---


Frame B:
lys*ytlimlfhflilkl*mqllrlxlll*lqxfpiilylxfys*hhkinekm---


Frame C:
yianir**cyfif*f*sckcsy*gxcyscdsnxfp*sfi*xfihniir*mkkw---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/               297   3e-80
FC-IC1048 (FC-IC1048Q) /CSM/FC-IC/FC-IC1048Q.Seq.d/                   297   3e-80
FC-IC0628 (FC-IC0628Q) /CSM/FC-IC/FC-IC0628Q.Seq.d/                   297   3e-80
VSB230 (VSB230Q) /CSM/VS/VSB2-B/VSB230Q.Seq.d/                         38   0.040
VFH872 (VFH872Q) /CSM/VF/VFH8-C/VFH872Q.Seq.d/                         38   0.040
VFE431 (VFE431Q) /CSM/VF/VFE4-B/VFE431Q.Seq.d/                         38   0.040
VFA375 (VFA375Q) /CSM/VF/VFA3-D/VFA375Q.Seq.d/                         38   0.040
SLH727 (SLH727Q) /CSM/SL/SLH7-B/SLH727Q.Seq.d/                         38   0.040
VSH170 (VSH170Q) /CSM/VS/VSH1-C/VSH170Q.Seq.d/                         34   0.62
VSG448 (VSG448Q) /CSM/VS/VSG4-B/VSG448Q.Seq.d/                         34   0.62

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF155828|AF155828.1 Dictyostelium discoideum NADH dehydrogenase subunit 5 (nad5) gene, complete cds; tRNA-Phe gene, complete sequence; and ribosomal protein S4 (rps4) and NADH dehydrogenase subunit 4L (nad4L) genes, complete cds; mitochondrial genes for mitochondrial products.   297   2e-77  1
AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence.   297   2e-77  1
AC013789|AC013789.6 Homo sapiens clone RP11-19L10, WORKING DRAFT SEQUENCE, 4 ordered pieces.    46   2e-05  8
AC084171|AC084171.2 Homo sapiens chromosome 8 clone CTD-2183P16 map 8, WORKING DRAFT SEQUENCE, 2 ordered pieces.    46   4e-04  6
M95783|M95783.1 Dictyostelium discoideum phosphoinositide-specific phospholipase C (DdPLC) mRNA, complete cds.    46   0.001  2
AZ525262|AZ525262.1 242PbA09 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    36   0.017  2
AF178030|AF178030.2 Homo sapiens chromosome 8 clone HPAC24 map 8q24.1, complete sequence.    46   0.018  7
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           40   0.038  12
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    36   0.041  6
AE001391|AE001391.2 Plasmodium falciparum 3D7 chromosome 2 section 28 of 73 of the complete sequence.    32   0.061  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q34313) RecName: Full=NADH-ubiquinone oxidoreductase chain 5;  ...   102   5e-21
AY700145_26(AY700145|pid:none) Polysphondylium pallidum mitochon...    70   2e-11
EU275727_45(EU275727|pid:none) Dictyostelium fasciculatum strain...    59   7e-08

 psg: 0.75  gvh: 0.37  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for FC-IC1048 is mit

>FC-IC1048F.Seq
ACTATATAGCTAATATACGTTGATAATGTTATTTCATTTTTTAATTTTAAAGCTGTAAAT
GCAGTTACTAAGGTTGNTGCTACTCCTGTGACTCCAATTNTTTCCCATAATCCTTTATCT
AANNTTTTATTCATAACATCATAAGATAAATGAAAAAATGGTNNNNNNNNNN