NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1032
Library FC-IC
(Link to library)
Clone ID FC-IC1032
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15450-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>FC-IC1032 (FC-IC1032Q) /CSM/FC-IC/FC-IC1032Q.Seq.d/
XXXXXXXXXXCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAATTAAATAAAAAATT
ATAAAATTAAATATTTATTTTAATAAGTATNNTTTTAAAATAAAGCAAAACCTGAACCTG
AACCAGAGGCGGCACCAGTTTGGGTTGATTGGGAAGAACCAGAGAAAGAACCAGCACCAG
ACATTGATGAAGAATCAGCACCAGAGATGGTGAAAGTGGTGGT
sequence update 2001.11. 5
Translated Amino Acid sequence 
---ffffffffffrik*KIIKLNIYFNKYXFKIKQNLNLNQRRHQFGLIGKNQRKNQHQT
LMKNQHQRW*kww
Translated Amino Acid sequence (All Frames) 
Frame A:
---lfffffffff*n*iknykikylf**vxf*nkakpepepeaapvwvdweepekepapd
ideesapemvkvv


Frame B:
---ffffffffffrik*KIIKLNIYFNKYXFKIKQNLNLNQRRHQFGLIGKNQRKNQHQT
LMKNQHQRW*kww


Frame C:
---ffffffffflelnkkl*n*ifilisxxlk*skt*t*trggtslg*lgrtrertstrh
**ristrdgesgg
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ484 (VSJ484Q) /CSM/VS/VSJ4-D/VSJ484Q.Seq.d/                        236   1e-61
VSI490 (VSI490Q) /CSM/VS/VSI4-D/VSI490Q.Seq.d/                        236   1e-61
VSF843 (VSF843Q) /CSM/VS/VSF8-B/VSF843Q.Seq.d/                        236   1e-61
VSF151 (VSF151Q) /CSM/VS/VSF1-C/VSF151Q.Seq.d/                        236   1e-61
VSD390 (VSD390Q) /CSM/VS/VSD3-D/VSD390Q.Seq.d/                        236   1e-61
VSC744 (VSC744Q) /CSM/VS/VSC7-B/VSC744Q.Seq.d/                        236   1e-61
VSC485 (VSC485Q) /CSM/VS/VSC4-D/VSC485Q.Seq.d/                        236   1e-61
VSC373 (VSC373Q) /CSM/VS/VSC3-D/VSC373Q.Seq.d/                        236   1e-61
VSB462 (VSB462Q) /CSM/VS/VSB4-C/VSB462Q.Seq.d/                        236   1e-61
VSB211 (VSB211Q) /CSM/VS/VSB2-A/VSB211Q.Seq.d/                        236   1e-61
own update 2001.11.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF140780|AF140780.1 Dictyostelium discoideum countin gene, complete cds.   236   1e-58  1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   236   1e-58  1
CF574166|CF574166.1 MCSA111H03 Maturing Sugarcane Stem Lambda ZIPLOX Library (MCS) Saccharum sp. cDNA clone MCSA085E08 5', mRNA sequence.    32   0.53   2
CF574920|CF574920.1 MCSA141B04 Maturing Sugarcane Stem Lambda ZIPLOX Library (MCS) Saccharum sp. cDNA clone MCSA121H05 5', mRNA sequence.    32   0.54   2
BX511100|BX511100.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-57M13.    40   1.3    2
CD141346|CD141346.1 MG1-0070T-D255-E09-U.B MG1-0070 Schistosoma mansoni cDNA clone MG1-0070T-D255-E09.B, mRNA sequence.    32   2.0    2
CD154771|CD154771.1 ML1-0036T-L181-G10-U.B ML1-0036 Schistosoma mansoni cDNA clone ML1-0036T-L181-G10.B, mRNA sequence.    32   2.0    2
AC105473|AC105473.4 Rattus norvegicus clone CH230-254I23, WORKING DRAFT SEQUENCE, 2 unordered pieces.    36   6.6    2
AC021921|AC021921.2 Homo sapiens clone RP11-24H17, LOW-PASS SEQUENCE SAMPLING.    34   8.7    2
AC018642|AC018642.7 Homo sapiens chromosome 7 clone RP11-329I5, complete sequence.    40   12     1
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000552_838(CP000552|pid:none) Prochlorococcus marinus str. MIT...    33   3.9
AY924732_1(AY924732|pid:none) Arabidopsis thaliana hypothetical ...    33   3.9
AE017245_73(AE017245|pid:none) Mycoplasma synoviae 53, complete ...    33   3.9
protein update 2009. 1. 4
PSORT 

 psg: 0.54  gvh: 0.09  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.50  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for FC-IC1032 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-IC1032Z
3' end seq. 
>FC-IC1032Z.Seq
NNNNNNNNNNCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAATTAAATAAAAAATT
ATAAAATTAAATATTTATTTTAATAAGTATNNTTTTAAAATAAAGCAAAACCTGAACCTG
AACCAGAGGCGGCACCAGTTTGGGTTGATTGGGAAGAACCAGAGAAAGAACCAGCACCAG
ACATTGATGAAGAATCAGCACCAGAGATGGTGAAAGTGGTGGT
Length of 3' end seq. 223
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -