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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC1017
Library FC-IC
(Link to library)
Clone ID FC-IC1017
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16272-1
Original site URL
Representative seq. ID FC-IC1017P
(Link to Original site)
Representative DNA sequence 
>FC-IC1017 (FC-IC1017Q) /CSM/FC-IC/FC-IC1017Q.Seq.d/
GGCCANCGNCCCAAGAGCNGGTCAACGTNGGNTACCCTCNTGGTGTNCAAAGAAACAAGA
AGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGA
CTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTA
TGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCT
TAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTC
TCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATA
AGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATTA
GATTTCAGAGAGTTATCACXXXXXXXXXXACCCCCGTCCCAAAANGNGGTCAANNCGGTT
ACCNTNNTNGNGNNGAAAAAAACAAAAAAATTTNNAAAATNGGNCAAGNTCANCCAAAAN
NCGGNNAACAAATTTCNNCCGGNAANACTGAATTNGNTTTNANTNAAAANACTNTCNATC
CNATGGGGGGTTTNGCNCCCNNCGGNATGGTTAAANANNAATTTTTAANGNTTAAAGGNT
NNGNTGNNGGNCCNAAAAAAAAANCCTTTNCCTTNAAAAAAAGNNTCCCCCCNCNAACTG
GNNGNGNNNCCCCCNAAAAAANCCCTNTCAAATTNNTNNANNCCCCCNNCAAGTTTGGNC
CCGGTTTTNNTCNAACCNCTNAAAANAANANTNAANATTTNGGGGNCAAAAAANCAANAT
CAANTAAGGNTTTAATTCAANAAATTNNATTTCAAANNGTTTTCCANCNAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGCTTG
sequence update 2001.11. 5
Translated Amino Acid sequence 
gxrpksxstxxtlxvxketrrftesvklnqktvnksqpvrlnsi*lkrlsiqwvvslttv
wlnmns*clkvvllvqerep*p*ERVSPLKLVVLPSRKSLSNSSIPPASLVTVFIKPLKI
RLNISASRNQDQLRLKFNKLDFRELS---

---TPVPKXGQXGYXXXXEKNKKIXKXGQXXPKXGXQISXGXTEXXXXXXTXXPMGGXAP
XGMVKXXFLXXKGXXXGPKKKXFXXKKXXPPXTGXXXPXKXPXKXXXXPXKFGPGFXXTX
XXXXXXXGXKKXXSXKXLIQXIXFQXVFXXKKKKKKKKKKKL
Translated Amino Acid sequence (All Frames) 
Frame A:
gxrpksxstxxtlxvxketrrftesvklnqktvnksqpvrlnsi*lkrlsiqwvvslttv
wlnmns*clkvvllvqerep*p*ERVSPLKLVVLPSRKSLSNSSIPPASLVTVFIKPLKI
RLNISASRNQDQLRLKFNKLDFRELS---

---TPVPKXGQXGYXXXXEKNKKIXKXGQXXPKXGXQISXGXTEXXXXXXTXXPMGGXAP
XGMVKXXFLXXKGXXXGPKKKXFXXKKXXPPXTGXXXPXKXPXKXXXXPXKFGPGFXXTX
XXXXXXXGXKKXXSXKXLIQXIXFQXVFXXKKKKKKKKKKKL

Frame B:
axxpragqrxxpswcxkkqedlqnrssstrrr*tnlnr*d*irfn*kdyqsngwfrslry
g*t*ilna*rlccwskkeslnlkkeyhhsnwsccprenhsqihrylqqvwsrsssnr*r*
d*ifrrqeikin*glnsin*isesyh---

---ppsqxxvxxvtxxxxkktkkfxkxxkxxqxxxnkfxpxxlnxxxxkxlsixwgvxxp
xxwlxxnf*xlkxxxxxxkkxpxpxkkxspxxlxxxppkkxlsnxxxppxslxpvxxxpl
kxxxxixgxkxqxqxrx*fxkxxfkxfsxxkkkkkkkkkksl

Frame C:
pxxqexvnvgypxgvqrnkkiyrigqaqpedgkqistgktefdltektinpmggfahygm
vkheflmlkgcvagprkraltlrksittqtgraalekitlkfidtsskfghglhqtaedk
tkyfgvkksrstka*iq*irfqrvi---

---prpkxxsxrlpxxxxkkqknxxnxxxsxkxrxtnfxrxx*ixfxxkxxxsxggfxxx
rxg*xxifxx*rxxxxxxkkxlxlxkkxppxnwxxxpxkxpxqixxxpxqvwxrfxsnxx
kxxxxfxgqkxxix*gfnsxnxisxxfpxkkkkkkkkkkka
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1017 (FC-IC1017Q) /CSM/FC-IC/FC-IC1017Q.Seq.d/                   833   0.0
SLC742 (SLC742Q) /CSM/SL/SLC7-B/SLC742Q.Seq.d/                        791   0.0
VSI163 (VSI163Q) /CSM/VS/VSI1-C/VSI163Q.Seq.d/                        783   0.0
VFN362 (VFN362Q) /CSM/VF/VFN3-C/VFN362Q.Seq.d/                        783   0.0
VFM438 (VFM438Q) /CSM/VF/VFM4-B/VFM438Q.Seq.d/                        783   0.0
VFL835 (VFL835Q) /CSM/VF/VFL8-B/VFL835Q.Seq.d/                        783   0.0
VFL717 (VFL717Q) /CSM/VF/VFL7-A/VFL717Q.Seq.d/                        783   0.0
VFL402 (VFL402Q) /CSM/VF/VFL4-A/VFL402Q.Seq.d/                        783   0.0
VFI836 (VFI836Q) /CSM/VF/VFI8-B/VFI836Q.Seq.d/                        783   0.0
VFI645 (VFI645Q) /CSM/VF/VFI6-B/VFI645Q.Seq.d/                        783   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L08391|L08391.1 Dictyostelium discoideum ribosomal protein (L3) gene, complete cds.   456   0.0    2
CB008280|CB008280.1 VVC055G10_148020 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055G10 5, mRNA sequence.    50   2e-04  2
CD802153|CD802153.1 EST 10028 Ripe Grape Berry Skins Lambda Triplex2 Library Vitis vinifera cDNA clone B3CS00RL001F06 3', mRNA sequence.    50   2e-04  2
CB006581|CB006581.1 VVC035D10_139332 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC035D10 5, mRNA sequence.    50   2e-04  2
CD719078|CD719078.1 VVB157C10_410063 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB157C10 5, mRNA sequence.    50   2e-04  2
BQ798071|BQ798071.1 EST 7009 Ripening Grape berries Lambda Zap II Library Vitis vinifera cDNA clone RT094C10 3', mRNA sequence.    50   2e-04  2
CF207340|CF207340.1 CAB20001_IIa_Ra_F10 Cabernet Sauvignon Flower bloom - CAB2 Vitis vinifera cDNA clone CAB20001_IIa_Ra_F10 3', mRNA sequence.    50   2e-04  2
CB976850|CB976850.1 CAB40003_IIIa_Fa_D08 Cabernet Sauvignon Berry - CAB4 Vitis vinifera cDNA clone CAB40003_IIIa_Fa_D08 5', mRNA sequence.    50   2e-04  2
CB980647|CB980647.1 CAB70003_IIIaF_A07 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70003_IIIaF_A07 5', mRNA sequence.    50   2e-04  2
BQ796440|BQ796440.1 EST 5378 Ripening Grape berries Lambda Zap II Library Vitis vinifera cDNA clone RT041C07 3', mRNA sequence.    50   2e-04  2
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3;  &JC4254(JC4254...   245   2e-63
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr...   145   2e-33
AJ720292_1(AJ720292|pid:none) Gallus gallus mRNA for hypothetica...   144   3e-33
BT070643_1(BT070643|pid:none) Picea sitchensis clone WS02742_A15...   143   7e-33
EU999182_1(EU999182|pid:none) Artemia franciscana ribosomal prot...   142   2e-32
AM048985_1(AM048985|pid:none) Micromalthus debilis partial mRNA ...   142   2e-32
EF070522_1(EF070522|pid:none) Maconellicoccus hirsutus clone WHM...   141   3e-32
AY395739_1(AY395739|pid:none) Nicotiana tabacum ribosomal protei...   140   4e-32
BT034517_1(BT034517|pid:none) Zea mays full-length cDNA clone ZM...   140   6e-32
BT036034_1(BT036034|pid:none) Zea mays full-length cDNA clone ZM...   140   6e-32
protein update 2009. 5.21
PSORT 

 psg: 0.65  gvh: 0.50  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.50  mip: 0.08
 nuc: 0.41  erl: 0.00  erm: 1.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for FC-IC1017 is nuc
5' end seq. ID FC-IC1017F
5' end seq. 
>FC-IC1017F.Seq
GGCCANCGNCCCAAGAGCNGGTCAACGTNGGNTACCCTCNTGGTGTNCAAAGAAACAAGA
AGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGA
CTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTA
TGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCT
TAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTC
TCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATA
AGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATTA
GATTTCAGAGAGTTATCACNNNNNNNNNN
Length of 5' end seq. 449
3' end seq. ID FC-IC1017Z
3' end seq. 
>FC-IC1017Z.Seq
NNNNNNNNNNACCCCCGTCCCAAAANGNGGTCAANNCGGTTACCNTNNTNGNGNNGAAAA
AAACAAAAAAATTTNNAAAATNGGNCAAGNTCANCCAAAANNCGGNNAACAAATTTCNNC
CGGNAANACTGAATTNGNTTTNANTNAAAANACTNTCNATCCNATGGGGGGTTTNGCNCC
CNNCGGNATGGTTAAANANNAATTTTTAANGNTTAAAGGNTNNGNTGNNGGNCCNAAAAA
AAAANCCTTTNCCTTNAAAAAAAGNNTCCCCCCNCNAACTGGNNGNGNNNCCCCCNAAAA
AANCCCTNTCAAATTNNTNNANNCCCCCNNCAAGTTTGGNCCCGGTTTTNNTCNAACCNC
TNAAAANAANANTNAANATTTNGGGGNCAAAAAANCAANATCAANTAAGGNTTTAATTCA
ANAAATTNNATTTCAAANNGTTTTCCANCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAGCTTG
Length of 3' end seq. 488
Connected seq. ID FC-IC1017P
Connected seq. 
>FC-IC1017P.Seq
GGCCANCGNCCCAAGAGCNGGTCAACGTNGGNTACCCTCNTGGTGTNCAAAGAAACAAGA
AGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGA
CTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTA
TGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCT
TAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTC
TCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATA
AGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATTA
GATTTCAGAGAGTTATCAC----------ACCCCCGTCCCAAAANGNGGTCAANNCGGTT
ACCNTNNTNGNGNNGAAAAAAACAAAAAAATTTNNAAAATNGGNCAAGNTCANCCAAAAN
NCGGNNAACAAATTTCNNCCGGNAANACTGAATTNGNTTTNANTNAAAANACTNTCNATC
CNATGGGGGGTTTNGCNCCCNNCGGNATGGTTAAANANNAATTTTTAANGNTTAAAGGNT
NNGNTGNNGGNCCNAAAAAAAAANCCTTTNCCTTNAAAAAAAGNNTCCCCCCNCNAACTG
GNNGNGNNNCCCCCNAAAAAANCCCTNTCAAATTNNTNNANNCCCCCNNCAAGTTTGGNC
CCGGTTTTNNTCNAACCNCTNAAAANAANANTNAANATTTNGGGGNCAAAAAANCAANAT
CAANTAAGGNTTTAATTCAANAAATTNNATTTCAAANNGTTTTCCANCNAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAGCTTG
Length of connected seq. 917
Full length Seq ID -
Full length Seq. -
Length of full length seq. -