FC-IC1004
Library FC-IC
(Link to library)
Clone ID FC-IC1004
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13941-1
Original site URL
Representative seq. ID FC-IC1004E
(Link to Original site)
Representative DNA sequence
>FC-IC1004 (FC-IC1004Q) /CSM/FC-IC/FC-IC1004Q.Seq.d/
ACCAGATAGAGAACCAACCAAAGAGAATGTTCAATTTGCCATTGAAAATGGTCCATATGG
TAGATGCGTCTATGAGAGTGATAATGATGTGGTTGATCAACAAATTGTAAATTTAGAGTT
TGAAGGTGGTGCACTATCTTCTTTTAGTATGGTAGCATTCACTGAGAGCATGTGTGT
sequence update 2001.11.10
Translated Amino Acid sequence
PDREPTKENVQFAIENGPYGRCVYESDNDVVDQQIVNLEFEGGALSSFSMVAFTESMC


Translated Amino Acid sequence (All Frames)
Frame A:
tr*rtnqrecsich*kwsiw*mrl*e***cg*stnckfrv*rwctiff*ygsih*ehvc


Frame B:
PDREPTKENVQFAIENGPYGRCVYESDNDVVDQQIVNLEFEGGALSSFSMVAFTESMC


Frame C:
qienqpkrmfnlplkmvhmvdasmrvimmwlinkl*i*slkvvhylllvw*hslracv


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC1004 (FC-IC1004Q) /CSM/FC-IC/FC-IC1004Q.Seq.d/ 351 2e-96
SSE707 (SSE707Q) /CSM/SS/SSE7-A/SSE707Q.Seq.d/ 184 3e-46
SSD194 (SSD194Q) /CSM/SS/SSD1-D/SSD194Q.Seq.d/ 184 3e-46
SLH457 (SLH457Q) /CSM/SL/SLH4-C/SLH457Q.Seq.d/ 184 3e-46
CHD281 (CHD281Q) /CSM/CH/CHD2-D/CHD281Q.Seq.d/ 184 3e-46
CHA155 (CHA155Q) /CSM/CH/CHA1-C/CHA155Q.Seq.d/ 184 3e-46
CFI173 (CFI173Q) /CSM/CF/CFI1-D/CFI173Q.Seq.d/ 184 3e-46
CFD357 (CFD357Q) /CSM/CF/CFD3-C/CFD357Q.Seq.d/ 184 3e-46
CFD168 (CFD168Q) /CSM/CF/CFD1-C/CFD168Q.Seq.d/ 184 3e-46
AFH865 (AFH865Q) /CSM/AF/AFH8-C/AFH865Q.Seq.d/ 184 3e-46

own update 2002.10. 7
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 184 3e-43 1
BI323094|BI323094.1 kt61c11.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q19278 Q19278 SIMILAR TO ENOYL-COA HYDRATASES. [1] ;, mRNA sequence. 48 0.038 1
AC113472|AC113472.4 Mus musculus clone RP23-279A14, WORKING DRAFT SEQUENCE, 6 ordered pieces. 40 0.85 2
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 32 1.8 6
AW265976|AW265976.1 L30-2631T3 Ice plant Lambda Uni-Zap XR expression library, 30 hours NaCl treatment Mesembryanthemum crystallinum cDNA clone L30-2631 5', mRNA sequence. 42 2.4 1
BM301637|BM301637.1 MCR049D10_26316 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment prescreened for removal of highly abundant transcripts Mesembryanthemum crystallinum cDNA clone MCR049D10 5, mRNA sequence. 42 2.4 1
AC116645|AC116645.4 Homo sapiens BAC clone RP11-685C12 from 4, complete sequence. 42 2.4 1
BE130473|BE130473.1 L48-662T3 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment Mesembryanthemum crystallinum cDNA clone L48-662 5', mRNA sequence. 42 2.4 1
CE262546|CE262546.1 tigr-gss-dog-17000346599087 Dog Library Canis familiaris genomic, genomic survey sequence. 34 2.8 2
AX655884|AX655884.1 Sequence 5754 from Patent WO03000898. 40 2.8 2
dna update 2004. 2. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE017353_188(AE017353|pid:none) Cryptococcus neoformans var. neo... 73 3e-12
CP000826_2566(CP000826|pid:none) Serratia proteamaculans 568, co... 64 2e-09
CP000001_1613(CP000001|pid:none) Bacillus cereus E33L, complete ... 62 5e-09
CP001618_300(CP001618|pid:none) Beutenbergia cavernae DSM 12333,... 62 5e-09
CP001634_663(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, co... 60 2e-08
AM180355_1442(AM180355|pid:none) Clostridium difficile 630 compl... 58 1e-07
CP000359_1101(CP000359|pid:none) Deinococcus geothermalis DSM 11... 50 2e-05
CP001276_705(CP001276|pid:none) Thermomicrobium roseum DSM 5159 ... 50 2e-05
AE000513_1340(AE000513|pid:none) Deinococcus radiodurans R1 chro... 49 4e-05
CP001114_1267(CP001114|pid:none) Deinococcus deserti VCD115, com... 47 2e-04
protein update 2009. 7. 1
PSORT

psg: 0.75 gvh: 0.52 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
44.0 %: nuclear
4.0 %: mitochondrial

>> prediction for FC-IC1004 is cyt

5' end seq. ID FC-IC1004F
5' end seq.
>FC-IC1004F.Seq
ACCAGATAGAGAACCAACCAAAGAGAATGTTCAATTTGCCATTGAAAATGGTCCATATGG
TAGATGCGTCTATGAGAGTGATAATGATGTGGTTGATCAACAAATTGTAAATTTAGAGTT
TGAAGGTGGTGCACTATCTTCTTTTAGTATGGTAGCATTCACTGAGAGCATGTGTGTNNN
NNNNNNN
Length of 5' end seq. 187
3' end seq. ID FC-IC1004Z
3' end seq.
>FC-IC1004Z.Seq
NNNNNNNNNNACCAGATAGAGAACCAACCAAAGAGAATGTTCAATTTGCCATTGAAAATG
GTCCATATGGTAGATGCGTCTATGAGAGTGATAATGATGTGGTTGATCAACAAATTGTAA
ATTTAGAGTTTGAAGGTGGTGCACTATCTTCTTTTAGTATGGTAGCATTCACTGAGAGCA
TGTGTGT
Length of 3' end seq. 187
Connected seq. ID FC-IC1004P
Connected seq.
>FC-IC1004P.Seq
ACCAGATAGAGAACCAACCAAAGAGAATGTTCAATTTGCCATTGAAAATGGTCCATATGG
TAGATGCGTCTATGAGAGTGATAATGATGTGGTTGATCAACAAATTGTAAATTTAGAGTT
TGAAGGTGGTGCACTATCTTCTTTTAGTATGGTAGCATTCACTGAGAGCATGTGTGT---
-------ACCAGATAGAGAACCAACCAAAGAGAATGTTCAATTTGCCATTGAAAATGGTC
CATATGGTAGATGCGTCTATGAGAGTGATAATGATGTGGTTGATCAACAAATTGTAAATT
TAGAGTTTGAAGGTGGTGCACTATCTTCTTTTAGTATGGTAGCATTCACTGAGAGCATGT
GTGT
Length of connected seq. 354
Full length Seq ID FC-IC1004E
Full length Seq.
>FC-IC1004E.Seq
ACCAGATAGAGAACCAACCAAAGAGAATGTTCAATTTGCCATTGAAAATGGTCCATATGG
TAGATGCGTCTATGAGAGTGATAATGATGTGGTTGATCAACAAATTGTAAATTTAGAGTT
TGAAGGTGGTGCACTATCTTCTTTTAGTATGGTAGCATTCACTGAGAGCATGTGTGT
Length of full length seq. 177