>FC-IC0973 (FC-IC0973Q) /CSM/FC-IC/FC-IC0973Q.Seq.d/
XXXXXXXXXXACACCATTAGCTCTTGGATAGATATCAGTCAAATAAAAGAAGATATGACC
AGATACGATTGCCAAGAAATCGCTATATGGTGGATGACCAGTTTGAAGGAAATGTGCTAC
TAAAAATACCCATGGTAAATAAATGGTTTTGAATGAAAAGAATCCATAGAAATTACTTGT

---hh*LLDRYQSNKRRYDQIRLPRNRYMVDDQFEGNVLLKIPMVNKWF*mkrihrnyl

Frame A:
---hh*LLDRYQSNKRRYDQIRLPRNRYMVDDQFEGNVLLKIPMVNKWF*mkrihrnyl


Frame B:
---tisswidisqikedmtrydcqeiaiwwmtslkemcy*kypw*ingfe*kesieitc


Frame C:
---plalg*isvk*kki*pdtiakkslygg*pv*rkcatknthgk*mvlneknp*kll

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH533 (SSH533Q) /CSM/SS/SSH5-B/SSH533Q.Seq.d/                        337   3e-92
SSG502 (SSG502Q) /CSM/SS/SSG5-A/SSG502Q.Seq.d/                        337   3e-92
SSB294 (SSB294Q) /CSM/SS/SSB2-D/SSB294Q.Seq.d/                        337   3e-92
FC-IC0973 (FC-IC0973Q) /CSM/FC-IC/FC-IC0973Q.Seq.d/                   337   3e-92
FC-IC0287 (FC-IC0287Q) /CSM/FC-IC/FC-IC0287Q.Seq.d/                   337   3e-92
FC-IC0285 (FC-IC0285Q) /CSM/FC-IC/FC-IC0285Q.Seq.d/                   337   3e-92
FC-IC0283 (FC-IC0283Q) /CSM/FC-IC/FC-IC0283Q.Seq.d/                   331   2e-90
VSK295 (VSK295Q) /CSM/VS/VSK2-D/VSK295Q.Seq.d/                         32   2.6
VSJ240 (VSJ240Q) /CSM/VS/VSJ2-B/VSJ240Q.Seq.d/                         32   2.6
VHO611 (VHO611Q) /CSM/VH/VHO6-A/VHO611Q.Seq.d/                         32   2.6

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL157821|AL157821.14 Human DNA sequence from clone RP11-93M14 on chromosome 13 Contains  part of the GPC5 (glypican 5) gene, ESTs, STSs and GSSs.    34   0.11   8
AC020987|AC020987.8 Homo sapiens chromosome 8, clone RP11-249L4, complete sequence.    36   0.24   8
AC068069|AC068069.12 Homo sapiens chromosome 15 clone RP11-11B2, complete sequence.    30   0.37   8
AC113404|AC113404.3 Homo sapiens chromosome 5 clone RP11-466P24, complete sequence.    28   0.56   9
AC133109|AC133109.3 Homo sapiens BAC clone RP11-698M13 from 2, complete sequence.    34   0.58   4
AL034399|AL034399.6 Human DNA sequence from clone RP6-191P20 on chromosome Xq23.    32   0.60   5
AC026783|AC026783.5 Homo sapiens chromosome 5 clone CTD-2129A22, complete sequence.    28   0.61   9
AC125437|AC125437.6 Homo sapiens chromosome 18, clone CTD-2286N8, complete sequence.    40   0.62   6
AC105184|AC105184.3 Homo sapiens chromosome 18 clone RP11-1022O7 map 18, WORKING DRAFT SEQUENCE, 14 ordered pieces.    40   0.85   5
AC040172|AC040172.5 Homo sapiens chromosome 16 clone RP11-60I4, complete sequence.    34   1.1    5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM468134_1(AM468134|pid:none) Vitis vinifera contig VV78X175529....    59   7e-08
(Q4G2J4) RecName: Full=Derlin-2.1; AltName: Full=ZmDerlin2-1;  &...    53   3e-06
(Q851X7) RecName: Full=Derlin-2; AltName: Full=OsDerlin 2-1;  &A...    53   3e-06
(Q4G2J3) RecName: Full=Derlin-2.2; AltName: Full=ZmDerlin2-2;  &...    53   3e-06
EF576228_1(EF576228|pid:none) Oryza sativa (indica cultivar-grou...    53   3e-06
EF070554_1(EF070554|pid:none) Maconellicoccus hirsutus clone WHM...    53   4e-06
EU975476_1(EU975476|pid:none) Zea mays clone 490711 unknown mRNA.      52   5e-06
CP000593_248(CP000593|pid:none) Ostreococcus lucimarinus CCE9901...    52   5e-06
BT053491_1(BT053491|pid:none) Medicago truncatula clone MTYFP_FQ...    51   1e-05
CP001327_282(CP001327|pid:none) Micromonas sp. RCC299 chromosome...    51   1e-05

 psg: 0.41  gvh: 0.16  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: mitochondrial

>> prediction for FC-IC0973 is nuc

>FC-IC0973Z.Seq
NNNNNNNNNNACACCATTAGCTCTTGGATAGATATCAGTCAAATAAAAGAAGATATGACC
AGATACGATTGCCAAGAAATCGCTATATGGTGGATGACCAGTTTGAAGGAAATGTGCTAC
TAAAAATACCCATGGTAAATAAATGGTTTTGAATGAAAAGAATCCATAGAAATTACTTGT