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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0929
Library FC-IC
(Link to library)
Clone ID FC-IC0929
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16527-1
Original site URL
Representative seq. ID FC-IC0929P
(Link to Original site)
Representative DNA sequence 
>FC-IC0929 (FC-IC0929Q) /CSM/FC-IC/FC-IC0929Q.Seq.d/
ACCATATTTAATAAGGTAACGAGATTCAAGTGCTGCACTACTAGCAAATGCCCAACATGA
TCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAATCTACTGTAAGAGT
TGATGTTGGGGCTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGG
TGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGGTTGGAGCTGG
TGTTGTTGGTTTTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGTGTGGTTGGAGCTGG
TGTXXXXXXXXXXAATTTTGGGGNCTTGGNTTTTTTGGGNCTTGGTNTTTTTNGTTTTTG
AAANANTTGAAACTGGTGNGGTTGTTTTGGAAGGGTTGGAACCTGGTGTTNTTGGTTTTG
GGTGGTTGAAGCTGGTGTTGTTGTTTTGAAGTAGTTGAAGCTGGTGTGGTTGGTTTTGGT
GTGGTTGAAGCTGGTGTAGTTGAAGCTGGGGTTGTTGTTTTTGGAGTATAAGGAAGAACA
CCCTTAAATCCACCTGCTGGGTAATATGAACATGAAACTTCAGATTTATCTGGACATATT
GTCTTTGCGCAACCATATGAAGT
sequence update 2001.11. 5
Translated Amino Acid sequence 
pylir*rdssaallanaqhdphcp*SLIGVWYEVQSTVRVDVGAGVVGAGVVGFGVVGAG
VVGFGVVGAGVVGFGVVGAGVVGFGVVGAGVVGFGVVGAG---

---ILGXWXFWXLVFXVFEXXETGXVVLEGLEPGVXGFGWLKLVLLF*ss*swcgwfwcg
*swcs*swgccfwsirkntlkstcwvi*t*nfrfiwtyclcati*s
Translated Amino Acid sequence (All Frames) 
Frame A:
tifnkvtrfkccttskcpt*salslisywslv*spiycks*cwgwccwgwccwfwsswsw
cgwfwsgwswccwfwggwswccwfwsswswcgwfwcgwswc---

---nfgxlxflglgxfxf*xx*nwxgcfgrvgtwcxwfwvveagvvvlk*lklvwlvlvw
lklv*lklgllfleykeehp*ihllgnmnmklqiyldilslrnhmk

Frame B:
pylir*rdssaallanaqhdphcp*SLIGVWYEVQSTVRVDVGAGVVGAGVVGFGVVGAG
VVGFGVVGAGVVGFGVVGAGVVGFGVVGAGVVGFGVVGAG---

---ILGXWXFWXLVFXVFEXXETGXVVLEGLEPGVXGFGWLKLVLLF*ss*swcgwfwcg
*swcs*swgccfwsirkntlkstcwvi*t*nfrfiwtyclcati*s

Frame C:
hi**gneiqvlhy*qmpnmirivldlllefgmksnll*elmlglvllglvllvle*lelv
wlvlewlelvllvlgwlelvllvle*lelvwlvlvwlelv---

---fwglgffgxwxfxflkxlklvxlfwkgwnlvxlvlgg*swcccfevveagvvgfgvv
eagvveagvvvfgv*grtplnppag*yehetsdlsghivfaqpye
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0929 (FC-IC0929Q) /CSM/FC-IC/FC-IC0929Q.Seq.d/                   498   e-140
FC-IC1098 (FC-IC1098Q) /CSM/FC-IC/FC-IC1098Q.Seq.d/                   416   e-115
FC-IC1785 (FC-IC1785Q) /CSM/FC-IC/FC-IC1785Q.Seq.d/                   365   e-100
FC-IC1753 (FC-IC1753Q) /CSM/FC-IC/FC-IC1753Q.Seq.d/                   365   e-100
FC-IC1728 (FC-IC1728Q) /CSM/FC-IC/FC-IC1728Q.Seq.d/                   365   e-100
FC-IC1720 (FC-IC1720Q) /CSM/FC-IC/FC-IC1720Q.Seq.d/                   365   e-100
FC-IC1523 (FC-IC1523Q) /CSM/FC-IC/FC-IC1523Q.Seq.d/                   365   e-100
FC-IC1519 (FC-IC1519Q) /CSM/FC-IC/FC-IC1519Q.Seq.d/                   365   e-100
FC-IC1511 (FC-IC1511Q) /CSM/FC-IC/FC-IC1511Q.Seq.d/                   365   e-100
FC-IC1486 (FC-IC1486Q) /CSM/FC-IC/FC-IC1486Q.Seq.d/                   365   e-100
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB088483|AB088483.1 Dictyostelium discoideum gene for gamete and mating-type specific protein A, complete cds.   327   e-157  6
AZ686636|AZ686636.1 ENTFZ42TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    60   4e-05  1
M94163|M94163.1 Entamoeba histolytica (clone gEh-CPp2) cysteine proteinase (CPp2) gene, complete cds.    60   4e-05  1
U28755|U28755.1 Entamoeba invadens cysteine proteinase gene, partial cds.    60   4e-05  1
BH165563|BH165563.1 ENTSB84TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    60   4e-05  1
AZ535019|AZ535019.1 ENTBP24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    58   2e-04  1
S58670|S58670.1 ACP2=cysteine proteinase [Entamoeba histolytica, HM-1, Genomic/mRNA, 933 nt].    52   0.009  1
CD451153|CD451153.1 USDA-FP_103216 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-42_H04 5', mRNA sequence.    52   0.009  1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    48   0.14   1
U64859|U64859.1 Caenorhabditis elegans cosmid R09F10, complete sequence.    48   0.14   1
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB088483_1(AB088483|pid:none) Dictyostelium discoideum gmsA gene...    91   3e-17
BC080004_1(BC080004|pid:none) Xenopus laevis MGC81823 protein, m...    54   3e-06
BT050087_1(BT050087|pid:none) Salmo salar clone ssal-evd-563-114...    54   3e-06
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...    54   3e-06
AB091670_1(AB091670|pid:none) Pandalus borealis PbCtL mRNA for c...    54   3e-06
FJ807676_1(FJ807676|pid:none) Dicentrarchus labrax cathepsin L m...    54   5e-06
KHCHL(S00081;A25654;A26818;B25654)cathepsin L (EC 3.4.22.15) - c...    53   6e-06
AY126275_28(AY126275|pid:none) Mamestra configurata nucleopolyhe...    53   8e-06
AX497240_1(AX497240|pid:none) Sequence 7 from Patent WO0229058.        53   8e-06
(Q5E998) RecName: Full=Cathepsin L2;          EC=3.4.22.43; Flag...    52   1e-05
protein update 2009. 5.21
PSORT 

 psg: 0.75  gvh: 0.51  alm: 0.25  top: 0.33  tms: 0.20  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 28.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for FC-IC0929 is end
5' end seq. ID FC-IC0929F
5' end seq. 
>FC-IC0929F.Seq
ACCATATTTAATAAGGTAACGAGATTCAAGTGCTGCACTACTAGCAAATGCCCAACATGA
TCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAATCTACTGTAAGAGT
TGATGTTGGGGCTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGG
TGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGGTTGGAGCTGG
TGTTGTTGGTTTTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGTGTGGTTGGAGCTGG
TGTNNNNNNNNNN
Length of 5' end seq. 313
3' end seq. ID FC-IC0929Z
3' end seq. 
>FC-IC0929Z.Seq
NNNNNNNNNNAATTTTGGGGNCTTGGNTTTTTTGGGNCTTGGTNTTTTTNGTTTTTGAAA
NANTTGAAACTGGTGNGGTTGTTTTGGAAGGGTTGGAACCTGGTGTTNTTGGTTTTGGGT
GGTTGAAGCTGGTGTTGTTGTTTTGAAGTAGTTGAAGCTGGTGTGGTTGGTTTTGGTGTG
GTTGAAGCTGGTGTAGTTGAAGCTGGGGTTGTTGTTTTTGGAGTATAAGGAAGAACACCC
TTAAATCCACCTGCTGGGTAATATGAACATGAAACTTCAGATTTATCTGGACATATTGTC
TTTGCGCAACCATATGAAGT
Length of 3' end seq. 320
Connected seq. ID FC-IC0929P
Connected seq. 
>FC-IC0929P.Seq
ACCATATTTAATAAGGTAACGAGATTCAAGTGCTGCACTACTAGCAAATGCCCAACATGA
TCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAATCTACTGTAAGAGT
TGATGTTGGGGCTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGG
TGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGGTTGGAGCTGG
TGTTGTTGGTTTTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGTGTGGTTGGAGCTGG
TGT----------AATTTTGGGGNCTTGGNTTTTTTGGGNCTTGGTNTTTTTNGTTTTTG
AAANANTTGAAACTGGTGNGGTTGTTTTGGAAGGGTTGGAACCTGGTGTTNTTGGTTTTG
GGTGGTTGAAGCTGGTGTTGTTGTTTTGAAGTAGTTGAAGCTGGTGTGGTTGGTTTTGGT
GTGGTTGAAGCTGGTGTAGTTGAAGCTGGGGTTGTTGTTTTTGGAGTATAAGGAAGAACA
CCCTTAAATCCACCTGCTGGGTAATATGAACATGAAACTTCAGATTTATCTGGACATATT
GTCTTTGCGCAACCATATGAAGT
Length of connected seq. 613
Full length Seq ID -
Full length Seq. -
Length of full length seq. -