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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0905
Library FC-IC
(Link to library)
Clone ID FC-IC0905
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U08373-1
Original site URL
Representative seq. ID FC-IC0905E
(Link to Original site)
Representative DNA sequence 
>FC-IC0905 (FC-IC0905Q) /CSM/FC-IC/FC-IC0905Q.Seq.d/
ACATTAAGCATCCTTTTCAGATACCCACAAGTGACCCAGTCTGTCGCAATAAAGTTCAAA
AATCAACTGTCTTTACTGACGGTCTTGTAGTTGTTTATGGTAATCCACTAACTATTTTAA
CCGTTTTCACTCATGTCGCCAAAAGAGTATATATTATCCTCCTTTAAAAACCCCGTCGGG
TTTTTAGAAGCATTATCCTTTTATTTGTCTAATGCCTCACGACTATTATATAATATTTTT
GTGACTTAAAAATTCTTTTATAATTATTTTATTCCCAATTTATAATACATGCTAGGATGC
ATATATGGTTTAATTATAGAAATTAAATGAGTCATCGAGTCTTTTGTAATATAGATTGAC
CATTTATCTTTTATATAGATCTCTTGAATTGT
sequence update 2001.11.10
Translated Amino Acid sequence 
IKHPFQIPTSDPVCRNKVQKSTVFTDGLVVVYGNPLTILTVFTHVAKRVYIILL*kprrv
frsiillfv*clttii*yfcdlkill*lfysqfiiharmhiwfnyrn*mshrvfcnid*p
fifyidllnc
Translated Amino Acid sequence (All Frames) 
Frame A:
tlsilfrypqvtqsvaikfknqlslltvl*lfmvih*lf*pfslmspkeyilssfknpvg
flealsfylsnasrllynifvt*kffynyfipnl*ymlgciygliieik*viesfvi*id
hlsfi*is*i


Frame B:
h*asfsdthk*pslsq*sskincly*rscsclw*stnyfnrfhscrqksiyypplktpsg
f*khypficlmphdyyiifl*lknsfiiilfpiyntc*daymv*l*klnesssll*yrlt
iyllyrslel


Frame C:
IKHPFQIPTSDPVCRNKVQKSTVFTDGLVVVYGNPLTILTVFTHVAKRVYIILL*kprrv
frsiillfv*clttii*yfcdlkill*lfysqfiiharmhiwfnyrn*mshrvfcnid*p
fifyidllnc
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0905 (FC-IC0905Q) /CSM/FC-IC/FC-IC0905Q.Seq.d/                   777   0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/               761   0.0
SSC647 (SSC647Q) /CSM/SS/SSC6-B/SSC647Q.Seq.d/                         38   0.096
VSB444 (VSB444Q) /CSM/VS/VSB4-B/VSB444Q.Seq.d/                         36   0.38
VHQ283 (VHQ283Q) /CSM/VH/VHQ2-D/VHQ283Q.Seq.d/                         36   0.38
VHP584 (VHP584Q) /CSM/VH/VHP5-D/VHP584Q.Seq.d/                         36   0.38
VHK593 (VHK593Q) /CSM/VH/VHK5-D/VHK593Q.Seq.d/                         36   0.38
VHJ230 (VHJ230Q) /CSM/VH/VHJ2-B/VHJ230Q.Seq.d/                         36   0.38
VHF269 (VHF269Q) /CSM/VH/VHF2-C/VHF269Q.Seq.d/                         36   0.38
VHF128 (VHF128Q) /CSM/VH/VHF1-B/VHF128Q.Seq.d/                         36   0.38
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence.   440   0.0    2
D50297|D50297.1 Dictyostelium discoideum mitochondrial DNA for cytochrome oxidase subunit 1 and subunit 2, ai4, ai3, ai2b, ai2a,complete cds.   440   0.0    2
X81884|X81884.1 D.discoideum mitochondrial cox1 gene and cox2 gene.   545   0.0    2
AF494279|AF494279.1 Chaetosphaeridium globosum mitochondrial DNA, complete  genome.    54   2e-14  6
AF447590|AF447590.1 Hypocrea jecorina mitochondrion, complete genome.    54   2e-06  3
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    34   1e-05  11
Y14564|Y14564.1 Trichoderma reesei DNA fragment trs3.              54   1e-05  2
AY347307|AY347307.1 Penicillium marneffei strain MP1 mitochonrion, complete genome.    44   4e-04  5
X55305|X55305.1 C.smithii, mobile intron of apocytochrome b gene.    44   4e-04  2
AC141823|AC141823.1 Apis mellifera clone CH224-62B18, WORKING DRAFT SEQUENCE, 15 unordered pieces.    42   8e-04  6
dna update 2004. 2. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB000109_9(AB000109|pid:none) Dictyostelium discoideum mitochond...    91   1e-17
X81884_4(X81884|pid:none) D.discoideum mitochondrial cox1 gene a...    85   7e-16
AF404303_13(AF404303|pid:none) Spizellomyces punctatus mitochond...    42   0.005
DQ376035_4(DQ376035|pid:none) Candida parapsilosis strain CLIB21...    41   0.011
(A9RAG8) RecName: Full=Cytochrome b mRNA maturase bI2;  &DQ50894...    40   0.033
AF404306_9(AF404306|pid:none) Rhizophydium sp. 136 mitochondrion...    40   0.033
DQ287690_6(DQ287690|pid:none) Blastocladiella emersonii mitochon...    39   0.057
DQ026513_4(DQ026513|pid:none) Candida orthopsilosis strain MCO47...    39   0.057
AY962590_4(AY962590|pid:none) Candida orthopsilosis strain MCO45...    39   0.057
AJ249985_2(AJ249985|pid:none) Podospora curvicolla mitochondrial...    37   0.22
protein update 2009. 7. 1
PSORT 

 psg: 0.52  gvh: 0.41  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: vesicles of secretory system
	  4.0 %: vacuolar

>> prediction for FC-IC0905 is nuc
5' end seq. ID FC-IC0905F
5' end seq. 
>FC-IC0905F.Seq
ACATTAAGCATCCTTTTCAGATACCCACAAGTGACCCAGTCTGTCGCAATAAAGTTCAAA
AATCAACTGTCTTTACTGACGGTCTTGTAGTTGTTTATGGTAATCCACTAACTATTTTAA
CCGTTTTCACTCATGTCGCCAAAAGAGTATATATTATCCTCCTTTAAAAACCCCGTCGGG
TTTTTAGAAGCATTATCCTTTTATTTGTCTAATGCCTCACGACTATTATATAATATTTTT
GTGACTTAAAAATTCTTTTATAATTATTTTATTCCCAATTTATAATACATGCTAGGATGC
ATATATGGTTTAATTATAGAAATTAAATGAGTCATCGAGTCTTTTGTAATATAGATTGAC
CATTTATCTTTTATATAGATCTCTTGAATTGTNNNNNNNNNN
Length of 5' end seq. 402
3' end seq. ID FC-IC0905Z
3' end seq. 
>FC-IC0905Z.Seq
NNNNNNNNNNACATTAAGCATCCTTTTCAGATACCCACAAGTGACCCAGTCTGTCGCAAT
AAAGTTCAAAAATCAACTGTCTTTACTGACGGTCTTGTAGTTGTTTATGGTAATCCACTA
ACTATTTTAACCGTTTTCACTCATGTCGCCAAAAGAGTATATATTATCCTCCTTTAAAAA
CCCCGTCGGGTTTTTAGAAGCATTATCCTTTTATTTGTCTAATGCCTCACGACTATTATA
TAATATTTTTGTGACTTAAAAATTCTTTTATAATTATTTTATTCCCAATTTATAATACAT
GCTAGGATGCATATATGGTTTAATTATAGAAATTAAATGAGTCATCGAGTCTTTTGTAAT
ATAGATTGACCATTTATCTTTTATATAGATCTCTTGAATTGT
Length of 3' end seq. 402
Connected seq. ID FC-IC0905P
Connected seq. 
>FC-IC0905P.Seq
ACATTAAGCATCCTTTTCAGATACCCACAAGTGACCCAGTCTGTCGCAATAAAGTTCAAA
AATCAACTGTCTTTACTGACGGTCTTGTAGTTGTTTATGGTAATCCACTAACTATTTTAA
CCGTTTTCACTCATGTCGCCAAAAGAGTATATATTATCCTCCTTTAAAAACCCCGTCGGG
TTTTTAGAAGCATTATCCTTTTATTTGTCTAATGCCTCACGACTATTATATAATATTTTT
GTGACTTAAAAATTCTTTTATAATTATTTTATTCCCAATTTATAATACATGCTAGGATGC
ATATATGGTTTAATTATAGAAATTAAATGAGTCATCGAGTCTTTTGTAATATAGATTGAC
CATTTATCTTTTATATAGATCTCTTGAATTGT----------ACATTAAGCATCCTTTTC
AGATACCCACAAGTGACCCAGTCTGTCGCAATAAAGTTCAAAAATCAACTGTCTTTACTG
ACGGTCTTGTAGTTGTTTATGGTAATCCACTAACTATTTTAACCGTTTTCACTCATGTCG
CCAAAAGAGTATATATTATCCTCCTTTAAAAACCCCGTCGGGTTTTTAGAAGCATTATCC
TTTTATTTGTCTAATGCCTCACGACTATTATATAATATTTTTGTGACTTAAAAATTCTTT
TATAATTATTTTATTCCCAATTTATAATACATGCTAGGATGCATATATGGTTTAATTATA
GAAATTAAATGAGTCATCGAGTCTTTTGTAATATAGATTGACCATTTATCTTTTATATAG
ATCTCTTGAATTGT
Length of connected seq. 784
Full length Seq ID FC-IC0905E
Full length Seq. 
>FC-IC0905E.Seq
ACATTAAGCATCCTTTTCAGATACCCACAAGTGACCCAGTCTGTCGCAATAAAGTTCAAA
AATCAACTGTCTTTACTGACGGTCTTGTAGTTGTTTATGGTAATCCACTAACTATTTTAA
CCGTTTTCACTCATGTCGCCAAAAGAGTATATATTATCCTCCTTTAAAAACCCCGTCGGG
TTTTTAGAAGCATTATCCTTTTATTTGTCTAATGCCTCACGACTATTATATAATATTTTT
GTGACTTAAAAATTCTTTTATAATTATTTTATTCCCAATTTATAATACATGCTAGGATGC
ATATATGGTTTAATTATAGAAATTAAATGAGTCATCGAGTCTTTTGTAATATAGATTGAC
CATTTATCTTTTATATAGATCTCTTGAATTGT
Length of full length seq. 392