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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0897
Library FC-IC
(Link to library)
Clone ID FC-IC0897
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10119-1
Original site URL
Representative seq. ID FC-IC0897E
(Link to Original site)
Representative DNA sequence 
>FC-IC0897 (FC-IC0897Q) /CSM/FC-IC/FC-IC0897Q.Seq.d/
ACTACCACTATCATCAAAGGTGAATACAAAGATTTTGCCCAAAGTTTGATGATGGAAAAA
GGTGTGCAACACAATATTAGTGTTTAACATAATATCGGTGGTTGAAATATCTCGGTCTAG
AAATTGACGTGCAATCATTACAATAACTGTCCAATAAATTGGATGAATAACTAATCTCCA
ACCAAGACGGAAGATACTATTTTCAATAGTAAGATAAACTGGAATTAAAAAGAACATATA
TACAAGACTAAATAAGGTTACCACAATATCCGGGGCTGCGTAATTATAAGCTGTCCAAAC
ACTTTTCATGGT
sequence update 2001.11.10
Translated Amino Acid sequence 
TTTIIKGEYKDFAQSLMMEKGVQHNISV*hnigg*nisv*kltcnhynncpinwmnn*sp
tktedtifnskinwn*kehiyktk*gyhnirgcviiscpntfhg
Translated Amino Acid sequence (All Frames) 
Frame A:
TTTIIKGEYKDFAQSLMMEKGVQHNISV*hnigg*nisv*kltcnhynncpinwmnn*sp
tktedtifnskinwn*kehiyktk*gyhnirgcviiscpntfhg


Frame B:
lplsskvntkilpkv**wkkvcntilvfniisvveisrsrn*raiititvq*ig*itnlq
prrkilfsivr*tgikkniytrlnkvttisgaa*l*avqtlfm


Frame C:
yhyhqr*iqrfcpkfddgkrcatqy*clt*yrwlkylgleidvqslq*lsnklde*lisn
qdgryyfq**dklelkrtyiqd*irlpqypglrnyklskhfsw
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0897 (FC-IC0897Q) /CSM/FC-IC/FC-IC0897Q.Seq.d/                   618   e-176
FC-IC1536 (FC-IC1536Q) /CSM/FC-IC/FC-IC1536Q.Seq.d/                   599   e-170
SLC170 (SLC170Q) /CSM/SL/SLC1-C/SLC170Q.Seq.d/                         32   4.7
own update 2001.11.18
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AX811312|AX811312.1 Sequence 1 from Patent WO03062469.             34   0.16   2
AC079145|AC079145.4 Homo sapiens BAC clone RP11-42N12 from 2, complete sequence.    34   0.16   2
AQ529017|AQ529017.1 RPCI-11-351F2.TV RPCI-11 Homo sapiens genomic clone RPCI-11-351F2, DNA sequence.    34   0.21   2
AQ536758|AQ536758.1 RPCI-11-325C6.TV RPCI-11 Homo sapiens genomic clone RPCI-11-325C6, genomic survey sequence.    34   0.21   2
AQ382277|AQ382277.1 RPCI11-136A7.TV RPCI-11 Homo sapiens genomic clone RPCI-11-136A7, genomic survey sequence.    34   0.21   2
BD283232|BD283232.1 Flea head, nerve cord, hindgut and malpighian tubule nucleic acid molecules, proteins and uses thereof.    44   1.1    1
AP004723|AP004723.4 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1126_G08.    44   1.1    1
AC105892|AC105892.4 Rattus norvegicus clone CH230-158D14, WORKING DRAFT SEQUENCE, 1 ordered piece.    44   1.1    1
AP004224|AP004224.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1111E11.    44   1.1    1
AP004181|AP004181.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_G09, WORKING DRAFT SEQUENCE, 1 ordered pieces.    36   2.2    3
dna update 2004. 2. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL591688_1826(AL591688|pid:none) Sinorhizobium meliloti 1021 com...    33   2.4
CP001080_647(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1...    33   4.1
AE015927_1737(AE015927|pid:none) Clostridium tetani E88, complet...    33   4.1
CP000690_155(CP000690|pid:none) Acidiphilium cryptum JF-5 plasmi...    32   5.3
AF227914_1(AF227914|pid:none) Venturia inaequalis ATP-binding ca...    32   5.3
BA000016_445(BA000016|pid:none) Clostridium perfringens str. 13 ...    32   9.1
BX842647_200(BX842647|pid:none) Bdellovibrio bacteriovorus compl...    32   9.1
CP000553_1409(CP000553|pid:none) Prochlorococcus marinus str. NA...    32   9.1
protein update 2009. 2.28
PSORT 

 psg: 0.79  gvh: 0.21  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for FC-IC0897 is nuc
5' end seq. ID FC-IC0897F
5' end seq. 
>FC-IC0897F.Seq
ACTACCACTATCATCAAAGGTGAATACAAAGATTTTGCCCAAAGTTTGATGATGGAAAAA
GGTGTGCAACACAATATTAGTGTTTAACATAATATCGGTGGTTGAAATATCTCGGTCTAG
AAATTGACGTGCAATCATTACAATAACTGTCCAATAAATTGGATGAATAACTAATCTCCA
ACCAAGACGGAAGATACTATTTTCAATAGTAAGATAAACTGGAATTAAAAAGAACATATA
TACAAGACTAAATAAGGTTACCACAATATCCGGGGCTGCGTAATTATAAGCTGTCCAAAC
ACTTTTCATGGTNNNNNNNNNN
Length of 5' end seq. 322
3' end seq. ID FC-IC0897Z
3' end seq. 
>FC-IC0897Z.Seq
NNNNNNNNNNACTACCACTATCATCAAAGGTGAATACAAAGATTTTGCCCAAAGTTTGAT
GATGGAAAAAGGTGTGCAACACAATATTAGTGTTTAACATAATATCGGTGGTTGAAATAT
CTCGGTCTAGAAATTGACGTGCAATCATTACAATAACTGTCCAATAAATTGGATGAATAA
CTAATCTCCAACCAAGACGGAAGATACTATTTTCAATAGTAAGATAAACTGGAATTAAAA
AGAACATATATACAAGACTAAATAAGGTTACCACAATATCCGGGGCTGCGTAATTATAAG
CTGTCCAAACACTTTTCATGGT
Length of 3' end seq. 322
Connected seq. ID FC-IC0897P
Connected seq. 
>FC-IC0897P.Seq
ACTACCACTATCATCAAAGGTGAATACAAAGATTTTGCCCAAAGTTTGATGATGGAAAAA
GGTGTGCAACACAATATTAGTGTTTAACATAATATCGGTGGTTGAAATATCTCGGTCTAG
AAATTGACGTGCAATCATTACAATAACTGTCCAATAAATTGGATGAATAACTAATCTCCA
ACCAAGACGGAAGATACTATTTTCAATAGTAAGATAAACTGGAATTAAAAAGAACATATA
TACAAGACTAAATAAGGTTACCACAATATCCGGGGCTGCGTAATTATAAGCTGTCCAAAC
ACTTTTCATGGT----------ACTACCACTATCATCAAAGGTGAATACAAAGATTTTGC
CCAAAGTTTGATGATGGAAAAAGGTGTGCAACACAATATTAGTGTTTAACATAATATCGG
TGGTTGAAATATCTCGGTCTAGAAATTGACGTGCAATCATTACAATAACTGTCCAATAAA
TTGGATGAATAACTAATCTCCAACCAAGACGGAAGATACTATTTTCAATAGTAAGATAAA
CTGGAATTAAAAAGAACATATATACAAGACTAAATAAGGTTACCACAATATCCGGGGCTG
CGTAATTATAAGCTGTCCAAACACTTTTCATGGT
Length of connected seq. 624
Full length Seq ID FC-IC0897E
Full length Seq. 
>FC-IC0897E.Seq
ACTACCACTATCATCAAAGGTGAATACAAAGATTTTGCCCAAAGTTTGATGATGGAAAAA
GGTGTGCAACACAATATTAGTGTTTAACATAATATCGGTGGTTGAAATATCTCGGTCTAG
AAATTGACGTGCAATCATTACAATAACTGTCCAATAAATTGGATGAATAACTAATCTCCA
ACCAAGACGGAAGATACTATTTTCAATAGTAAGATAAACTGGAATTAAAAAGAACATATA
TACAAGACTAAATAAGGTTACCACAATATCCGGGGCTGCGTAATTATAAGCTGTCCAAAC
ACTTTTCATGGT
Length of full length seq. 312