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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0893
Library FC-IC
(Link to library)
Clone ID FC-IC0893
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16527-1
Original site URL
Representative seq. ID FC-IC0893E
(Link to Original site)
Representative DNA sequence 
>FC-IC0893 (FC-IC0893Q) /CSM/FC-IC/FC-IC0893Q.Seq.d/
CCATATTTAATAACNGTAACGAGATTCAAGTGCTGCACTACTAGCAAATGCCCAACATGA
TCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAATCTACTGTAAGAGT
TGATGTTGGGGNTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGG
TGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGGTTGGAGCTGG
TGTTGTTGGTTTTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGTGTGGTTGGAGCTGG
TGTAGTTGGAGCTGGGGTTGTTGTTTTTGGAGTATAAGNAAGAACACCCTTAAATNCACC
TGNTGGTGTAATATAGAACATGNANNGTCNNNTTAATNNGANCATANTGTNTTTGCGCAG
CCATATTAAGT
sequence update 2001.11.10
Translated Amino Acid sequence 
pylitvtrfkccttskcpt*salslisywslv*spiycks*CWGWCCWGWCCWFWSSWSW
CGWFWSGWSWCCWFWGGWSWCCWFWSSWSWCGWFWCGWSWCSWSWGCCFWSIXKNTLKXT
XWCNIEHXXSX*xxhxvfaqpy*
Translated Amino Acid sequence (All Frames) 
Frame A:
pylitvtrfkccttskcpt*salslisywslv*spiycks*CWGWCCWGWCCWFWSSWSW
CGWFWSGWSWCCWFWGGWSWCCWFWSSWSWCGWFWCGWSWCSWSWGCCFWSIXKNTLKXT
XWCNIEHXXSX*xxhxvfaqpy*


Frame B:
hi**x*rdssaallanaqhdphcp*sligvwyevqstvrvdvgxgvvgagvvgfgvvgag
vvgfgvvgagvvgfgvvgagvvgfgvvgagvvgfgvvgagvvgagvvvfgv*xrtplnxp
xgvi*nmxxxxnxxixxlrshik


Frame C:
ifnnxneiqvlhy*qmpnmirivldlllefgmksnll*elmlgxvllglvllvle*lelv
wlvlewlelvllvlgwlelvllvle*lelvwlvlvwlelv*lelgllfleykxehp*xhl
xv*yrtxxvxlxxxxcxcaails
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0893 (FC-IC0893Q) /CSM/FC-IC/FC-IC0893Q.Seq.d/                   248   6e-65
FC-IC1760 (FC-IC1760Q) /CSM/FC-IC/FC-IC1760Q.Seq.d/                   232   4e-60
FC-IC1748 (FC-IC1748Q) /CSM/FC-IC/FC-IC1748Q.Seq.d/                   232   4e-60
FC-IC1665 (FC-IC1665Q) /CSM/FC-IC/FC-IC1665Q.Seq.d/                   232   4e-60
FC-IC1648 (FC-IC1648Q) /CSM/FC-IC/FC-IC1648Q.Seq.d/                   232   4e-60
FC-IC1642 (FC-IC1642Q) /CSM/FC-IC/FC-IC1642Q.Seq.d/                   232   4e-60
FC-IC1631 (FC-IC1631Q) /CSM/FC-IC/FC-IC1631Q.Seq.d/                   232   4e-60
FC-IC1622 (FC-IC1622Q) /CSM/FC-IC/FC-IC1622Q.Seq.d/                   232   4e-60
FC-IC1583 (FC-IC1583Q) /CSM/FC-IC/FC-IC1583Q.Seq.d/                   232   4e-60
FC-IC1527 (FC-IC1527Q) /CSM/FC-IC/FC-IC1527Q.Seq.d/                   232   4e-60
own update 2001.11.18
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB088483|AB088483.1 Dictyostelium discoideum gene for gamete and mating-type specific protein A, complete cds.   123   4e-63  4
AZ686636|AZ686636.1 ENTFZ42TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    60   3e-05  1
M94163|M94163.1 Entamoeba histolytica (clone gEh-CPp2) cysteine proteinase (CPp2) gene, complete cds.    60   3e-05  1
U28755|U28755.1 Entamoeba invadens cysteine proteinase gene, partial cds.    60   3e-05  1
BH165563|BH165563.1 ENTSB84TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    60   3e-05  1
AZ535019|AZ535019.1 ENTBP24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    58   1e-04  1
CD451153|CD451153.1 USDA-FP_103216 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-42_H04 5', mRNA sequence.    52   0.006  1
S58670|S58670.1 ACP2=cysteine proteinase [Entamoeba histolytica, HM-1, Genomic/mRNA, 933 nt].    52   0.006  1
AU202952|AU202952.1 Caenorhabditis elegans cDNA clone:yk814f02 : 5' end, single read.    48   0.10   1
U64859|U64859.1 Caenorhabditis elegans cosmid R09F10, complete sequence.    48   0.10   1
dna update 2003.10.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB088483_1(AB088483|pid:none) Dictyostelium discoideum gmsA gene...    80   2e-14
BC080004_1(BC080004|pid:none) Xenopus laevis MGC81823 protein, m...    52   5e-06
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...    52   9e-06
FJ807676_1(FJ807676|pid:none) Dicentrarchus labrax cathepsin L m...    51   1e-05
BC074718_1(BC074718|pid:none) Xenopus tropicalis MGC69486 protei...    51   1e-05
(P09648) RecName: Full=Cathepsin L1;          EC=3.4.22.15; Cont...    51   1e-05
KHCHL(S00081;A25654;A26818;B25654)cathepsin L (EC 3.4.22.15) - c...    51   1e-05
AX497240_1(AX497240|pid:none) Sequence 7 from Patent WO0229058.        51   1e-05
BC060335_1(BC060335|pid:none) Xenopus laevis cDNA clone MGC:6855...    51   1e-05
FJ772427_1(FJ772427|pid:none) Lutjanus argentimaculatus cathepsi...    51   1e-05
protein update 2009. 7. 1
PSORT 

 psg: 0.75  gvh: 0.67  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for FC-IC0893 is cyt
5' end seq. ID FC-IC0893F
5' end seq. 
>FC-IC0893F.Seq
CCATATTTAATAACCGTAACGAGATTCAAGTGCTGCACTACTAGCAAATGCCCAACATGA
TCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAATCTACTGTAAGAGT
TGATGTTGGGGCTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGG
TGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGGTTGGAGCTGG
TGTTGTTGGTTNTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGNGTGGTTGNNNNNNN
NNN
Length of 5' end seq. 303
3' end seq. ID FC-IC0893Z
3' end seq. 
>FC-IC0893Z.Seq
NNNNNNNNNNACCATATTTAATAAGGTAACGAGATTCAAGTGCTGCANTACTAGCAAATG
CCCAACATGATCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAATCTA
CTGTAAGAGTTGATGTTGGGGATGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAG
TTGGAGCTGGTGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGG
TTGGAGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGTGTGG
TTGGAGCTGGTGTAGTTGGAGCTGGGGTTGTTGTTTTTGGAGTATAAGNAAGAACACCCT
TAAATNCACCTGNTGGTGTAATATAGAACATGNANNGTCNNNTTAATNNGANCATANTGT
NTTTGCGCAGCCATATTAAGT
Length of 3' end seq. 441
Connected seq. ID FC-IC0893P
Connected seq. 
>FC-IC0893P.Seq
CCATATTTAATAACCGTAACGAGATTCAAGTGCTGCACTACTAGCAAATGCCCAACATGA
TCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAATCTACTGTAAGAGT
TGATGTTGGGGCTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGG
TGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGGTTGGAGCTGG
TGTTGTTGGTTNTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGNGTGGTTG-------
---ACCATATTTAATAAGGTAACGAGATTCAAGTGCTGCANTACTAGCAAATGCCCAACA
TGATCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAATCTACTGTAAG
AGTTGATGTTGGGGATGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGC
TGGTGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGGTTGGAGC
TGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGTGTGGTTGGAGC
TGGTGTAGTTGGAGCTGGGGTTGTTGTTTTTGGAGTATAAGNAAGAACACCCTTAAATNC
ACCTGNTGGTGTAATATAGAACATGNANNGTCNNNTTAATNNGANCATANTGTNTTTGCG
CAGCCATATTAAGT
Length of connected seq. 724
Full length Seq ID FC-IC0893E
Full length Seq. 
>FC-IC0893E.Seq
CCATATTTAATAACNGTAACGAGATTCAAGTGCTGCACTACTAGCAAATGCCCAACATGA
TCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAATCTACTGTAAGAGT
TGATGTTGGGGNTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGG
TGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGGTTGGAGCTGG
TGTTGTTGGTTTTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGTGTGGTTGGAGCTGG
TGTAGTTGGAGCTGGGGTTGTTGTTTTTGGAGTATAAGNAAGAACACCCTTAAATNCACC
TGNTGGTGTAATATAGAACATGNANNGTCNNNTTAATNNGANCATANTGTNTTTGCGCAG
CCATATTAAGT
Length of full length seq. 431