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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0885
Library FC-IC
(Link to library)
Clone ID FC-IC0885
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15103-1
Original site URL
Representative seq. ID FC-IC0885P
(Link to Original site)
Representative DNA sequence 
>FC-IC0885 (FC-IC0885Q) /CSM/FC-IC/FC-IC0885Q.Seq.d/
ACTGGTGGTATAATTGCTATCTCAAAGGCTGTTGGAAAACTTAACAATGAAGCTTTATCA
AATTTATATGTTGGTGAAGATGCAAAAAAAATATTTGTTAGTTCATATTTAGAAAATATT
AAAAATATCTATTTAAGAGCTGAAGCATACGATTCATCTAAATTAGAAGAACTTGCAAGA
ACTACCTTAATTGGTAATTCTGGACCTATAGAAAATAATCAAAAATTCTTTGTTACTGCA
TGTTCACCAAAGAAAGAAGGAAATGAAGATGAACTTATTGTAGATATCATTTCAAACTAT
AAACCAGTTGATAATGATAATAAACAATTGATTATTGATTCACAAAGATTTATTGTTGGT
TCAGGTGATGATAAAAATCAATTATCTGTAATCGAAGCAATTAGAGCAACTTCTGATATT
CCAGGTGCATTTAAATTAATAACAAAGGATGATGTAACTTTTTACGATGGTGGATTTTTG
TATAATAATCCAATTTTGATTGCATATGGTGAAGCTAGAAATCAATTCCCAAATGATAGA
ATTATAATACTCTCATTTGGTXXXXXXXXXXACTGGTGGTATAATTGCTATCTCAAAGGC
TGTTGGAAAACTTAACAATGAAGCTTTATCAAATTTATATGTTGGTGAAGATGCAAAAAA
AATATTTGTTAGTTCATATTTAGAAAATATTAAAAATATCTATTTAAGAGCTGAAGCATA
CGATTCATCTAAATTAGAAGAACTTGCAAGAACTACCTTAATTGGTAATTCTGGACCTAT
AGAAAATAATCAAAAATTCTTTGTTACTGCATGTTCACCAAAGAAAGAAGGAAATGAAGA
TGAACTTATTGTAGATATCATTTCAAACTATAAACCAGTTGATAATGATAATAAACAATT
GATTATTGATTCACAAAGATTTATTGTTGGTTCAGGTGATGATAAAAATCAATTATCTGT
AATCGAAGCAATTAGAGCAACTTCTGATATTCCAGGTGCATTTAAATTAATAACAAAGGA
TGATGTAACTTTTTACGATGGTGGATTTTTGTATAATAATCCAATTTTGATTGCATATGG
TGAAGCTAGAAATCAATTCCCAAATGATAGAATTATAATACTCTCATTTGGT
sequence update 2001.11.23
Translated Amino Acid sequence 
TGGIIAISKAVGKLNNEALSNLYVGEDAKKIFVSSYLENIKNIYLRAEAYDSSKLEELAR
TTLIGNSGPIENNQKFFVTACSPKKEGNEDELIVDIISNYKPVDNDNKQLIIDSQRFIVG
SGDDKNQLSVIEAIRATSDIPGAFKLITKDDVTFYDGGFLYNNPILIAYGEARNQFPNDR
IIILSFG---

---TGGIIAISKAVGKLNNEALSNLYVGEDAKKIFVSSYLENIKNIYLRAEAYDSSKLEE
LARTTLIGNSGPIENNQKFFVTACSPKKEGNEDELIVDIISNYKPVDNDNKQLIIDSQRF
IVGSGDDKNQLSVIEAIRATSDIPGAFKLITKDDVTFYDGGFLYNNPILIAYGEARNQFP
NDRIIILSFG
Translated Amino Acid sequence (All Frames) 
Frame A:
TGGIIAISKAVGKLNNEALSNLYVGEDAKKIFVSSYLENIKNIYLRAEAYDSSKLEELAR
TTLIGNSGPIENNQKFFVTACSPKKEGNEDELIVDIISNYKPVDNDNKQLIIDSQRFIVG
SGDDKNQLSVIEAIRATSDIPGAFKLITKDDVTFYDGGFLYNNPILIAYGEARNQFPNDR
IIILSFG---

---TGGIIAISKAVGKLNNEALSNLYVGEDAKKIFVSSYLENIKNIYLRAEAYDSSKLEE
LARTTLIGNSGPIENNQKFFVTACSPKKEGNEDELIVDIISNYKPVDNDNKQLIIDSQRF
IVGSGDDKNQLSVIEAIRATSDIPGAFKLITKDDVTFYDGGFLYNNPILIAYGEARNQFP
NDRIIILSFG

Frame B:
lvv*llsqrllenltmklyqiymlvkmqkkyllvhi*kilkisi*elkhtihln*knlqe
lp*lvildl*kiiknslllhvhqrkkemkmnll*isfqtinqlimiinn*llihkdlllv
qvmikinyl*skqleqllifqvhln**qrmm*lftmvdfciiiqf*lhmvkleinsqmie
l*yshl---

---lvv*llsqrllenltmklyqiymlvkmqkkyllvhi*kilkisi*elkhtihln*kn
lqelp*lvildl*kiiknslllhvhqrkkemkmnll*isfqtinqlimiinn*llihkdl
llvqvmikinyl*skqleqllifqvhln**qrmm*lftmvdfciiiqf*lhmvkleinsq
miel*yshl

Frame C:
wwyncylkgcwkt*q*sfikficw*rckknic*fifrky*kylfks*sirfi*irrtckn
ylnw*fwtyrk*skilcycmftkerrk*r*tycryhfkl*ts*****tidy*ftkiycwf
r***ksiicnrsn*snf*ysrci*innkg*cnflrwwifv**snfdciw*s*ksipk**n
yntliw---

---wwyncylkgcwkt*q*sfikficw*rckknic*fifrky*kylfks*sirfi*irrt
cknylnw*fwtyrk*skilcycmftkerrk*r*tycryhfkl*ts*****tidy*ftkiy
cwfr***ksiicnrsn*snf*ysrci*innkg*cnflrwwifv**snfdciw*s*ksipk
**nyntliw
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0885 (FC-IC0885Q) /CSM/FC-IC/FC-IC0885Q.Seq.d/                  2089   0.0
FC-IC1126 (FC-IC1126Q) /CSM/FC-IC/FC-IC1126Q.Seq.d/                  1065   0.0
FC-IC0911 (FC-IC0911Q) /CSM/FC-IC/FC-IC0911Q.Seq.d/                  1065   0.0
FC-IC1143 (FC-IC1143Q) /CSM/FC-IC/FC-IC1143Q.Seq.d/                  1055   0.0
FC-IC1645 (FC-IC1645Q) /CSM/FC-IC/FC-IC1645Q.Seq.d/                  1051   0.0
FC-AC16 (FC-AC16Q) /CSM/FC/FC-AC/FC-AC16Q.Seq.d/                      698   0.0
VFN561 (VFN561Q) /CSM/VF/VFN5-C/VFN561Q.Seq.d/                        628   e-179
VFE376 (VFE376Q) /CSM/VF/VFE3-D/VFE376Q.Seq.d/                        521   e-147
VHH856 (VHH856Q) /CSM/VH/VHH8-C/VHH856Q.Seq.d/                         38   0.29
VHH330 (VHH330Q) /CSM/VH/VHH3-B/VHH330Q.Seq.d/                         38   0.29
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    38   4e-10  21
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   1e-09  25
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    36   2e-09  15
AL035475|AL035475.7 Plasmodium falciparum MAL4P2.                  32   3e-09  23
AP003189|AP003189.2 Clostridium perfringens DNA, complete genome, section 5/10.    38   5e-09  18
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   1e-08  29
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           46   4e-08  23
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    38   6e-08  19
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence.    34   6e-08  20
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    34   1e-07  18
dna update 2003.12.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM999887_271(AM999887|pid:none) Wolbachia endosymbiont of Culex ...    52   4e-05
AM999887_454(AM999887|pid:none) Wolbachia endosymbiont of Culex ...    51   6e-05
AB478516_60(AB478516|pid:none) Wolbachia endosymbiont of Cadra c...    49   2e-04
AB478515_66(AB478515|pid:none) Wolbachia endosymbiont of Cadra c...    49   2e-04
CP001391_572(CP001391|pid:none) Wolbachia sp. wRi, complete geno...    48   7e-04
AE017196_502(AE017196|pid:none) Wolbachia endosymbiont of Drosop...    43   0.022
CP001102_389(CP001102|pid:none) Candidatus Amoebophilus asiaticu...    39   0.32
CP001047_343(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    39   0.32
CT573075_3(CT573075|pid:none) Zebrafish DNA sequence from clone ...    38   0.55
AC084197_19(AC084197|pid:none) Caenorhabditis elegans cosmid Y73...    38   0.72
protein update 2009. 5.21
PSORT 

 psg: 0.56  gvh: 0.22  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for FC-IC0885 is cyt
5' end seq. ID FC-IC0885F
5' end seq. 
>FC-IC0885F.Seq
ACTGGTGGTATAATTGCTATCTCAAAGGCTGTTGGAAAACTTAACAATGAAGCTTTATCA
AATTTATATGTTGGTGAAGATGCAAAAAAAATATTTGTTAGTTCATATTTAGAAAATATT
AAAAATATCTATTTAAGAGCTGAAGCATACGATTCATCTAAATTAGAAGAACTTGCAAGA
ACTACCTTAATTGGTAATTCTGGACCTATAGAAAATAATCAAAAATTCTTTGTTACTGCA
TGTTCACCAAAGAAAGAAGGAAATGAAGATGAACTTATTGTAGATATCATTTCAAACTAT
AAACCAGTTGATAATGATAATAAACAATTGATTATTGATTCACAAAGATTTATTGTTGGT
TCAGGTGATGATAAAAATCAATTATCTGTAATCGAAGCAATTAGAGCAACTTCTGATATT
CCAGGTGCATTTAAATTAATAACAAAGGATGATGTAACTTTTTACGATGGTGGATTTTTG
TATAATAATCCAATTTTGATTGCATATGGTGAAGCTAGAAATCAATTCCCAAATGATAGA
ATTATAATACTCTCATTTGGTNNNNNNNNNN
Length of 5' end seq. 571
3' end seq. ID FC-IC0885Z
3' end seq. 
>FC-IC0885Z.Seq
NNNNNNNNNNACTGGTGGTATAATTGCTATCTCAAAGGCTGTTGGAAAACTTAACAATGA
AGCTTTATCAAATTTATATGTTGGTGAAGATGCAAAAAAAATATTTGTTAGTTCATATTT
AGAAAATATTAAAAATATCTATTTAAGAGCTGAAGCATACGATTCATCTAAATTAGAAGA
ACTTGCAAGAACTACCTTAATTGGTAATTCTGGACCTATAGAAAATAATCAAAAATTCTT
TGTTACTGCATGTTCACCAAAGAAAGAAGGAAATGAAGATGAACTTATTGTAGATATCAT
TTCAAACTATAAACCAGTTGATAATGATAATAAACAATTGATTATTGATTCACAAAGATT
TATTGTTGGTTCAGGTGATGATAAAAATCAATTATCTGTAATCGAAGCAATTAGAGCAAC
TTCTGATATTCCAGGTGCATTTAAATTAATAACAAAGGATGATGTAACTTTTTACGATGG
TGGATTTTTGTATAATAATCCAATTTTGATTGCATATGGTGAAGCTAGAAATCAATTCCC
AAATGATAGAATTATAATACTCTCATTTGGT
Length of 3' end seq. 571
Connected seq. ID FC-IC0885P
Connected seq. 
>FC-IC0885P.Seq
ACTGGTGGTATAATTGCTATCTCAAAGGCTGTTGGAAAACTTAACAATGAAGCTTTATCA
AATTTATATGTTGGTGAAGATGCAAAAAAAATATTTGTTAGTTCATATTTAGAAAATATT
AAAAATATCTATTTAAGAGCTGAAGCATACGATTCATCTAAATTAGAAGAACTTGCAAGA
ACTACCTTAATTGGTAATTCTGGACCTATAGAAAATAATCAAAAATTCTTTGTTACTGCA
TGTTCACCAAAGAAAGAAGGAAATGAAGATGAACTTATTGTAGATATCATTTCAAACTAT
AAACCAGTTGATAATGATAATAAACAATTGATTATTGATTCACAAAGATTTATTGTTGGT
TCAGGTGATGATAAAAATCAATTATCTGTAATCGAAGCAATTAGAGCAACTTCTGATATT
CCAGGTGCATTTAAATTAATAACAAAGGATGATGTAACTTTTTACGATGGTGGATTTTTG
TATAATAATCCAATTTTGATTGCATATGGTGAAGCTAGAAATCAATTCCCAAATGATAGA
ATTATAATACTCTCATTTGGT----------ACTGGTGGTATAATTGCTATCTCAAAGGC
TGTTGGAAAACTTAACAATGAAGCTTTATCAAATTTATATGTTGGTGAAGATGCAAAAAA
AATATTTGTTAGTTCATATTTAGAAAATATTAAAAATATCTATTTAAGAGCTGAAGCATA
CGATTCATCTAAATTAGAAGAACTTGCAAGAACTACCTTAATTGGTAATTCTGGACCTAT
AGAAAATAATCAAAAATTCTTTGTTACTGCATGTTCACCAAAGAAAGAAGGAAATGAAGA
TGAACTTATTGTAGATATCATTTCAAACTATAAACCAGTTGATAATGATAATAAACAATT
GATTATTGATTCACAAAGATTTATTGTTGGTTCAGGTGATGATAAAAATCAATTATCTGT
AATCGAAGCAATTAGAGCAACTTCTGATATTCCAGGTGCATTTAAATTAATAACAAAGGA
TGATGTAACTTTTTACGATGGTGGATTTTTGTATAATAATCCAATTTTGATTGCATATGG
TGAAGCTAGAAATCAATTCCCAAATGATAGAATTATAATACTCTCATTTGGT
Length of connected seq. 1122
Full length Seq ID -
Full length Seq. -
Length of full length seq. -