>FC-IC0858 (FC-IC0858Q) /CSM/FC-IC/FC-IC0858Q.Seq.d/
ATTACANTTAAATAAAGATGGTTAGCGTTAAAAAAGTCAAGAAATCACAAGAAAACATTG
GTTCTAAATTAGCCCTCGTCATGAAGAGTGGTAAATCCCAATTAGGTTACAAATCAACCC
TTAAAACCTTAAGAGCTGGTAAATCAAAATTAATTTTACTCGCTAGCAATTTACCATCAA
TCCGTAGATCTGAAATCGAATACTACGCTATGATTANNCAAAACCACCTGTCCATTTATA
CTCAGGTAACAATGTNNNNNNAGGT

yx*IKMVSVKKVKKSQENIGSKLALVMKSGKSQLGYKSTLKTLRAGKSKLILLASNLPSI
RRSEIEYYAMIXQNHLSIYTQVTMXXX

Frame A:
itxk*rwlalkksrnhkktlvln*pss*rvvnpn*vtnqplkp*elvnqn*fyslaiyhq
svdlksnttl*lxkttcpfilr*qcxxr


Frame B:
lxlnkdg*r*ksqeitrkhwf*isprheew*ipirlqinp*nlksw*ikinftr*qftin
p*i*nrilrydxxkppvhlysgnnvxxg


Frame C:
yx*IKMVSVKKVKKSQENIGSKLALVMKSGKSQLGYKSTLKTLRAGKSKLILLASNLPSI
RRSEIEYYAMIXQNHLSIYTQVTMXXX

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0858 (FC-IC0858Q) /CSM/FC-IC/FC-IC0858Q.Seq.d/                   488   e-137
VSF780 (VSF780Q) /CSM/VS/VSF7-D/VSF780Q.Seq.d/                        456   e-128
VHA463 (VHA463Q) /CSM/VH/VHA4-C/VHA463Q.Seq.d/                        456   e-128
VHA213 (VHA213Q) /CSM/VH/VHA2-A/VHA213Q.Seq.d/                        456   e-128
FC-AR22 (FC-AR22Q) /CSM/FC/FC-AR/FC-AR22Q.Seq.d/                      456   e-128
VFM680 (VFM680Q) /CSM/VF/VFM6-D/VFM680Q.Seq.d/                        448   e-125
SSH878 (SSH878Q) /CSM/SS/SSH8-D/SSH878Q.Seq.d/                        440   e-123
VSE215 (VSE215Q) /CSM/VS/VSE2-A/VSE215Q.Seq.d/                        391   e-108
VFN308 (VFN308Q) /CSM/VF/VFN3-A/VFN308Q.Seq.d/                         36   0.25
VFM875 (VFM875Q) /CSM/VF/VFM8-D/VFM875Q.Seq.d/                         36   0.25

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AA841720|AA841720.1 MB3D6V6D07T3 Brugia malayi day 6 post-infection third stage larvae SAW96MLW-BmL3d6 Brugia malayi cDNA clone 3D6V6D07 5', mRNA sequence.    48   5e-04  2
AC084053|AC084053.6 Mus Musculus Strain C57BL6/J chromosome 3 BAC, RP23-158F1, complete sequence.    48   0.060  1
BU572652|BU572652.1 PA__Ea0001H21f Almond developing seed Prunus dulcis cDNA clone PA__Ea0001H21f, mRNA sequence.    48   0.060  1
AJ223316|AJ223316.1 Lupinus luteus mRNA for ribosomal protein L30.    48   0.060  1
BU573578|BU573578.1 PA__Ea0004H03f Almond developing seed Prunus dulcis cDNA clone PA__Ea0004H03f, mRNA sequence.    48   0.060  1
AC122935|AC122935.3 Mus musculus BAC clone RP23-20E4 from chromosome 3, complete sequence.    48   0.060  1
AZ590137|AZ590137.1 1M0399K06R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0399K06 R, DNA sequence.    48   0.060  1
BQ641167|BQ641167.1 EST290 almond cDNA library Prunus dulcis cDNA 5' similar to ribosomal protein L30, mRNA sequence.    48   0.060  1
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    34   0.15   6
CA755907|CA755907.1 BR030031000_PLATE_A09_65_068.ab1 OA Oryza sativa (japonica cultivar-group) cDNA clone BR030031000_PLATE_A09_65_068.ab1 similar to 60S ribosomal protein L30, mRNA sequence.    44   0.94   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55BS9) RecName: Full=60S ribosomal protein L30;                     109   7e-25
AF526198_1(AF526198|pid:none) Argopecten irradians isolate iolsa...    86   3e-16
AY961497_1(AY961497|pid:none) Lysiphlebus testaceipes ribosomal ...    83   6e-16
EF634720_1(EF634720|pid:none) Koerneria sp. RS1982 large subunit...    84   6e-16
EU302552_1(EU302552|pid:none) Lineus viridis ribosomal protein r...    84   7e-16
EF634715_1(EF634715|pid:none) Pristionchus sp. 11 RS5228 large s...    84   9e-16
EF634703_1(EF634703|pid:none) Pristionchus maupasi large subunit...    84   9e-16
EF634707_1(EF634707|pid:none) Pristionchus sp. 3 CZ3975 large su...    84   9e-16
EF634706_1(EF634706|pid:none) Pristionchus uniformis large subun...    84   9e-16
EF634704_1(EF634704|pid:none) Pristionchus lheritieri large subu...    84   9e-16

 psg: 0.54  gvh: 0.56  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: cytoplasmic
	 20.0 %: mitochondrial

>> prediction for FC-IC0858 is cyt

>FC-IC0858F.Seq
ATTACACTTAAATAAAGATGGTTAGCGTTAAAAAAGTCAAGAAATCACAAGAAAACATTG
GTTCTAAATTAGCCCTCGTCATGAAGAGTGGTAAATCCCAATTAGGTTACAAATCAACCC
TTAAAACCTTAAGAGCTGGTAAATCAAAATTAATTTTACTCGCTAGCAATTTACCATCAA
TCCGTAGATCTGAAATCGAATACTACGCTATGATNNCCCAAAACCACCTNNCCATTTATA
CTCAGGTANCAATGTCTTACTNNNNNNNNNN

>FC-IC0858Z.Seq
NNNNNNNNNNATTANAATTAAATAAAGATGGTTAGNGTTAAAAAAGTCAAGAAATCACAA
GAAAACATTGGTTCTAAATTAGCCCTCGTCATGAAGAGTGGTAAATCCCAATTAGGTTAC
AAATCAACCCTTAAAACCTTAAGAGCTGGTAAATCAAAATTAATTTTACTCGCTAGCAAT
TTACCATCAATCCGTAGATCTGAAATCGAATACTACGCTATGTTAAGCAAAACCACCGTC
CATTTATACTCAGGTAACAATGTTGACTTAGGT

>FC-IC0858P.Seq
ATTACACTTAAATAAAGATGGTTAGCGTTAAAAAAGTCAAGAAATCACAAGAAAACATTG
GTTCTAAATTAGCCCTCGTCATGAAGAGTGGTAAATCCCAATTAGGTTACAAATCAACCC
TTAAAACCTTAAGAGCTGGTAAATCAAAATTAATTTTACTCGCTAGCAATTTACCATCAA
TCCGTAGATCTGAAATCGAATACTACGCTATGATNNCCCAAAACCACCTNNCCATTTATA
CTCAGGTANCAATGTCTTACT----------ATTANAATTAAATAAAGATGGTTAGNGTT
AAAAAAGTCAAGAAATCACAAGAAAACATTGGTTCTAAATTAGCCCTCGTCATGAAGAGT
GGTAAATCCCAATTAGGTTACAAATCAACCCTTAAAACCTTAAGAGCTGGTAAATCAAAA
TTAATTTTACTCGCTAGCAATTTACCATCAATCCGTAGATCTGAAATCGAATACTACGCT
ATGTTAAGCAAAACCACCGTCCATTTATACTCAGGTAACAATGTTGACTTAGGT

>FC-IC0858E.Seq
ATTACANTTAAATAAAGATGGTTAGCGTTAAAAAAGTCAAGAAATCACAAGAAAACATTG
GTTCTAAATTAGCCCTCGTCATGAAGAGTGGTAAATCCCAATTAGGTTACAAATCAACCC
TTAAAACCTTAAGAGCTGGTAAATCAAAATTAATTTTACTCGCTAGCAATTTACCATCAA
TCCGTAGATCTGAAATCGAATACTACGCTATGATTANNCAAAACCACCTGTCCATTTATA
CTCAGGTAACAATGTNNNNNNAGGT