NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0854
Library FC-IC
(Link to library)
Clone ID FC-IC0854
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16142-1
Original site URL
Representative seq. ID FC-IC0854P
(Link to Original site)
Representative DNA sequence 
>FC-IC0854 (FC-IC0854Q) /CSM/FC-IC/FC-IC0854Q.Seq.d/
ACCAATTATGATGATTGGTAATAAATCAGATTTAGATGATGAAAGACAAGTAACCTATCA
AGAATGTAAAGATTTAGCACGTTGATTAGGTATGTCATTCATGGAAGTCTCCGCTAAAAG
TAGAGCAAATATTGAAGAAGTTTTCAATGAAACTGTTCGTTCTGTTAAAAGAAGAGAAGA
ATCATTATTAAAAAAAGATAAATCAAAAGATGGAAAAGATATTAAAAAGAAAAATTCAAT
AATTAAAAAATTAAATCAAAAAGTAAATAATACTAAAACCTCAATTTGTAAAATCATGTT
AATAACCTTTXXXXXXXXXXAAAGATGGGAAAGATATTTAAAAGAAAAATTCAATAATTT
AAAAATTTAATCAAAAAGTTAATAATACTAAAACCTCAATTTGTAAAATCATGTTAATAA
CCTTTTAAAAAAAAAAAAAAAAAAATCTGTAAAATATGTATTCTGTAAATAATAAAATG
sequence update 2001.11.23
Translated Amino Acid sequence 
pimmignksdldderqvtyqeckdlar*LGMSFMEVSAKSRANIEEVFNETVRSVKRREE
SLLKKDKSKDGKDIKKKNSIIKKLNQKVNNTKTSICKIMLITF---

---RWERYLKEKFNNLKI*sks**y*nlnl*nhvnnllkkkkkksvkyvfck**n
Translated Amino Acid sequence (All Frames) 
Frame A:
tnyddw**irfr**ktsnlsrm*rfstliryvihgslr*k*sky*rsfq*ncsfc*kkrr
iiikkr*ikrwkry*kekfnn*kiksksk*y*nlnl*nhvnnl---

---kdgkdi*kknsii*kfnqkvnntktsickimlitf*kkkkknl*nmysvnnkm

Frame B:
pimmignksdldderqvtyqeckdlar*LGMSFMEVSAKSRANIEEVFNETVRSVKRREE
SLLKKDKSKDGKDIKKKNSIIKKLNQKVNNTKTSICKIMLITF---

---kmgkifkrkiq*fknlikkliilkpqfvksc**pfkkkkkkickicil*iik

Frame C:
ql**lvinqi*mmkdk*piknvki*hvd*vchswksplkveqilkkfsmklfvllkeekn
hy*kkinqkmekilkrkiq*lkn*ikk*iilkpqfvksc**p---

---RWERYLKEKFNNLKI*sks**y*nlnl*nhvnnllkkkkkksvkyvfck**n
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0854 (FC-IC0854Q) /CSM/FC-IC/FC-IC0854Q.Seq.d/                   375   e-103
FC-IC0979 (FC-IC0979Q) /CSM/FC-IC/FC-IC0979Q.Seq.d/                   359   3e-98
FC-IC1344 (FC-IC1344Q) /CSM/FC-IC/FC-IC1344Q.Seq.d/                   353   2e-96
FC-IC1240 (FC-IC1240Q) /CSM/FC-IC/FC-IC1240Q.Seq.d/                   351   6e-96
FC-IC0482 (FC-IC0482Q) /CSM/FC-IC/FC-IC0482Q.Seq.d/                   345   4e-94
SSC696 (SSC696Q) /CSM/SS/SSC6-D/SSC696Q.Seq.d/                        335   4e-91
FC-IC1322 (FC-IC1322Q) /CSM/FC-IC/FC-IC1322Q.Seq.d/                   295   3e-79
VSD558 (VSD558Q) /CSM/VS/VSD5-C/VSD558Q.Seq.d/                        278   7e-74
FC-IC1042 (FC-IC1042Q) /CSM/FC-IC/FC-IC1042Q.Seq.d/                   274   1e-72
SSL159 (SSL159Q) /CSM/SS/SSL1-C/SSL159Q.Seq.d/                        248   7e-65
own update 2001.11.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC145330|AC145330.14 Medicago truncatula clone mth2-17l1, WORKING DRAFT SEQUENCE, 9 ordered pieces.    40   0.23   3
BZ056668|BZ056668.1 lle49b05.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    34   1.1    2
BH961693|BH961693.1 odd50f12.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    44   1.7    1
AL022305|AL022305.1 S.pombe chromosome II cosmid c14C8.            44   1.7    1
CD640104|CD640104.1 AGENCOURT_14535017 NIH_MGC_191 Homo sapiens cDNA clone IMAGE:30417256 5', mRNA sequence.    44   1.7    1
AU132810|AU132810.1 Homo sapiens cDNA clone:NT2RP4000606, 5' end, expressed in NT2 neuronal precursor cells after 2-weeks retinoic acid (RA) induction.    44   1.7    1
AI269512|AI269512.1 qh47h07.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA clone IMAGE:1847869 3' similar to gb:M29893 RAS-RELATED PROTEIN RAL-A (HUMAN);, mRNA sequence.    44   1.7    1
AU132473|AU132473.1 Homo sapiens cDNA clone:NT2RP3004496, 5' end, expressed in NT2 neuronal precursor cells after 2-weeks retinoic acid (RA) induction.    44   1.7    1
AI264784|AI264784.1 qx56h11.x1 NCI_CGAP_Pan1 Homo sapiens cDNA clone IMAGE:2005413 3' similar to gb:M29893 RAS-RELATED PROTEIN RAL-A (HUMAN);, mRNA sequence.    44   1.7    1
BQ349515|BQ349515.1 QV0-HT0368-310100-091-c08 HT0368 Homo sapiens cDNA, mRNA sequence.    44   1.7    1
dna update 2003.12.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55CB7) RecName: Full=Ras-like protein rasY; Flags: Precursor;       113   2e-24
(Q55CC0) RecName: Full=Ras-like protein rasW; Flags: Precursor;       107   2e-22
(Q55CB0) RecName: Full=Ras-like protein rasU; Flags: Precursor;        82   5e-15
(P62070) RecName: Full=Ras-related protein R-Ras2; AltName: Full...    65   1e-09
AK011419_1(AK011419|pid:none) Mus musculus 10 days embryo whole ...    65   1e-09
AK302033_1(AK302033|pid:none) Homo sapiens cDNA FLJ52173 complet...    65   1e-09
AK078870_1(AK078870|pid:none) Mus musculus adult male colon cDNA...    65   1e-09
AK299606_1(AK299606|pid:none) Homo sapiens cDNA FLJ61162 complet...    65   1e-09
AF493924_1(AF493924|pid:none) Homo sapiens Ras family small GTP ...    65   1e-09
AY888825_1(AY888825|pid:none) Synthetic construct Homo sapiens c...    65   1e-09
protein update 2009. 5.21
PSORT 

 psg: 0.49  gvh: 0.39  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for FC-IC0854 is cyt
5' end seq. ID FC-IC0854F
5' end seq. 
>FC-IC0854F.Seq
ACCAATTATGATGATTGGTAATAAATCAGATTTAGATGATGAAAGACAAGTAACCTATCA
AGAATGTAAAGATTTAGCACGTTGATTAGGTATGTCATTCATGGAAGTCTCCGCTAAAAG
TAGAGCAAATATTGAAGAAGTTTTCAATGAAACTGTTCGTTCTGTTAAAAGAAGAGAAGA
ATCATTATTAAAAAAAGATAAATCAAAAGATGGAAAAGATATTAAAAAGAAAAATTCAAT
AATTAAAAAATTAAATCAAAAAGTAAATAATACTAAAACCTCAATTTGTAAAATCATGTT
AATAACCTTTNNNNNNNNNN
Length of 5' end seq. 320
3' end seq. ID FC-IC0854Z
3' end seq. 
>FC-IC0854Z.Seq
NNNNNNNNNNAAAGATGGGAAAGATATTTAAAAGAAAAATTCAATAATTTAAAAATTTAA
TCAAAAAGTTAATAATACTAAAACCTCAATTTGTAAAATCATGTTAATAACCTTTTAAAA
AAAAAAAAAAAAAAATCTGTAAAATATGTATTCTGTAAATAATAAAATG
Length of 3' end seq. 169
Connected seq. ID FC-IC0854P
Connected seq. 
>FC-IC0854P.Seq
ACCAATTATGATGATTGGTAATAAATCAGATTTAGATGATGAAAGACAAGTAACCTATCA
AGAATGTAAAGATTTAGCACGTTGATTAGGTATGTCATTCATGGAAGTCTCCGCTAAAAG
TAGAGCAAATATTGAAGAAGTTTTCAATGAAACTGTTCGTTCTGTTAAAAGAAGAGAAGA
ATCATTATTAAAAAAAGATAAATCAAAAGATGGAAAAGATATTAAAAAGAAAAATTCAAT
AATTAAAAAATTAAATCAAAAAGTAAATAATACTAAAACCTCAATTTGTAAAATCATGTT
AATAACCTTT----------AAAGATGGGAAAGATATTTAAAAGAAAAATTCAATAATTT
AAAAATTTAATCAAAAAGTTAATAATACTAAAACCTCAATTTGTAAAATCATGTTAATAA
CCTTTTAAAAAAAAAAAAAAAAAAATCTGTAAAATATGTATTCTGTAAATAATAAAATG
Length of connected seq. 469
Full length Seq ID -
Full length Seq. -
Length of full length seq. -