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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0832
Library FC-IC
(Link to library)
Clone ID FC-IC0832
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08307-1
Original site URL
Representative seq. ID FC-IC0832P
(Link to Original site)
Representative DNA sequence 
>FC-IC0832 (FC-IC0832Q) /CSM/FC-IC/FC-IC0832Q.Seq.d/
ACCTTCGTAGAGATTGTTAACGAATGGATCTACGCCTAAAGAATTCATCCAATTACGGAA
AGTCTTTTCTTCACGAGTCTCTTCAATTATAACAACATCTTCAACTGGTTCCAATGCTGG
ATGAGTATTGAAAAGATTGGCAACGAATGCTAAATTAAGTTTTTGGAAACCAGTTACGAT
ATCCTTTGGTTTAAGGAACTTCTTACAACCTAATTTATCGGCATTCTCTAAAACTTTAAC
AGCACGTTGATCTAAATTTGAGATATTCAAAGCAGAGGTTTCGACACCAGCATCCTTTGG
TGCGATTTGTTTCAAAAGGATTGTATAACATTCTGAATCTTTAATATCACCAGAGAAATT
CTTTACTCTTCTTTGTGAGCCAGCAGCGGCTAAATGATAATTGAACCATCTCAATAAGAT
CTCTTCAACTGGAAGTTTCAATAAATCTTCAATTGTTTCACCATCATGTAAAAGACGATA
CAACTCTGGATGATTAGTTAAATTAATACGTGCGAATAAACCAATCTTAATAATTTGCCA
TGTTAAACCCATAATTAAATGAGCTCTACCTTCAACTAAATCACCTGCACCAATATTAAC
AACATTACAACCAATNGCTTTTGCTGAATTAATACAAAGTXXXXXXXXXXGTACNTTCGT
AGAGATTGTTAACGAATGGATCTACGCCTAAAGAATTCATCCAATTACGGAAAGTCTTTT
CTTCACGAGTCTCTTCAATTATAACAACATCTTCAACTGGTTCCAATGCTGGATGAGTAT
TGAAAAGATTGGCAACGAATGCTAAATTAAGTTTTTGGAAACCAGTTACGATATCCTTTG
GTTTAAGGAACTTCTTACAACCTAATTTATCGGCATTCTCTAAAACTTTAACAGCACGTT
GATCTAAATTTGAGATATTCAAAGCAGAGGTTTCGACACCAGCATCCTTTGGTGCGATTT
GTTTCAAAAGGATTGTATAACATTCTGAATCTTTAATATCACCAGAGAAATTCTTTACTC
TTCTTTGTGAGCCAGCAGCGGCTAAATGATAATTGAACCATCTCAATAAGATCTCTTCAA
CTGGAAGTTTCAATAAATCTTCAATTGTTTCACCATCATGTNANANNCGATGNNACTCTG
GATGATNAGTTNAATTNATACGTGCGAATAAACCAATNTTAATAATTTGCCATGTTAAAC
CCATAATTAAATGAGCTGCNACCTTCAAGTNAATCACNNGCACCAATNTTCCTGTCATGC
GTGCGTGTNGCTTATTGCATATATGAATACAAAGT
sequence update 2001.11. 5
Translated Amino Acid sequence 
ps*rlltngstpkefiqlrkvfssrvssiittsstgsnag*vlkrlatnaklsfwkpvti
sfglrnflqpnlsafsktltar*skfeifkaevstpasfgaicfkriv*hseslispekf
ftllcepaaak**lnhlnkisstgsfnkssivspsckrrynsg*lvklirankpiliich
vkpiik*ALPSTKSPAPILTTLQPXAFAELIQS---

---TFVEIVNEWIYA*rihpiteslfftslfnynnifnwfqcwmsiekignec*ikflet
sydilwfkelltt*figil*nfnstli*i*diqsrgfdtsilwcdlfqkdcitf*ifnit
reilyssl*assg*miiepsq*dlfnwkfq*ifncftimxxxmxlwmxsxixtce*tnxn
nlpc*thn*mscxlqvnhxhqxschacvxliaymntk
Translated Amino Acid sequence (All Frames) 
Frame A:
tfveivnewiya*rihpiteslfftslfnynnifnwfqcwmsiekignec*ikfletsyd
ilwfkelltt*figil*nfnstli*i*diqsrgfdtsilwcdlfqkdcitf*ifnitrei
lyssl*assg*miiepsq*dlfnwkfq*ifncftim*ktiqlwmis*intce*tnlnnlp
c*thn*msstfn*itctninnittnxfc*intk---

---vxs*rlltngstpkefiqlrkvfssrvssiittsstgsnag*vlkrlatnaklsfwk
pvtisfglrnflqpnlsafsktltar*skfeifkaevstpasfgaicfkriv*hseslis
pekfftllcepaaak**lnhlnkisstgsfnkssivspscxxrxxsg*xvxxirankpxl
iichvkpiik*aatfkxitxtnxpvmracxllhi*iqs

Frame B:
ps*rlltngstpkefiqlrkvfssrvssiittsstgsnag*vlkrlatnaklsfwkpvti
sfglrnflqpnlsafsktltar*skfeifkaevstpasfgaicfkriv*hseslispekf
ftllcepaaak**lnhlnkisstgsfnkssivspsckrrynsg*lvklirankpiliich
vkpiik*ALPSTKSPAPILTTLQPXAFAELIQS---

---yxrrdc*rmdlrlknssnygksflheslql*qhlqlvpmldey*kdwqrmln*vfgn
qlryplv*gtsynliyrhslkl*qhvdlnlryskqrfrhqhplvrfvskglynilnl*yh
qrnsllffvsqqrlndn*tisirslqlevsinlqlfhhhvxxdxtlddxxnxyvrinqx*
*famlnp*lnelxpssxsxapxflscvrvayciyeyk

Frame C:
lrrdc*rmdlrlknssnygksflheslql*qhlqlvpmldey*kdwqrmln*vfgnqlry
plv*gtsynliyrhslkl*qhvdlnlryskqrfrhqhplvrfvskglynilnl*yhqrns
llffvsqqrlndn*tisirslqlevsinlqlfhhhvkddttldd*ln*yvrinqs**fam
lnp*lnelylqlnhlhqy*qhynqxllln*yk---

---TFVEIVNEWIYA*rihpiteslfftslfnynnifnwfqcwmsiekignec*ikflet
sydilwfkelltt*figil*nfnstli*i*diqsrgfdtsilwcdlfqkdcitf*ifnit
reilyssl*assg*miiepsq*dlfnwkfq*ifncftimxxxmxlwmxsxixtce*tnxn
nlpc*thn*mscxlqvnhxhqxschacvxliaymntk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0832 (FC-IC0832Q) /CSM/FC-IC/FC-IC0832Q.Seq.d/                  2401   0.0
FC-IC1414 (FC-IC1414Q) /CSM/FC-IC/FC-IC1414Q.Seq.d/                  1255   0.0
FC-IC1251 (FC-IC1251Q) /CSM/FC-IC/FC-IC1251Q.Seq.d/                  1255   0.0
FC-IC1223 (FC-IC1223Q) /CSM/FC-IC/FC-IC1223Q.Seq.d/                  1255   0.0
FC-IC1129 (FC-IC1129Q) /CSM/FC-IC/FC-IC1129Q.Seq.d/                  1146   0.0
FC-IC0464 (FC-IC0464Q) /CSM/FC-IC/FC-IC0464Q.Seq.d/                  1017   0.0
CFK412 (CFK412Q) /CSM/CF/CFK4-A/CFK412Q.Seq.d/                       1015   0.0
FC-IC0571 (FC-IC0571Q) /CSM/FC-IC/FC-IC0571Q.Seq.d/                  1001   0.0
VFA420 (VFA420Q) /CSM/VF/VFA4-A/VFA420Q.Seq.d/                        946   0.0
FC-IC1252 (FC-IC1252Q) /CSM/FC-IC/FC-IC1252Q.Seq.d/                   327   2e-88
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L36202|L36202.1 Dictyostelium discoideum fimbrin (fimA) mRNA, complete cds.  1255   0.0    1
BX567934|BX567934.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse8h11_q1c.    54   3e-04  2
BM058495|BM058495.1 2193-02 hindgut and Malpighian tubule subtracted cDNA library Ctenocephalides felis cDNA clone 2193-02, mRNA sequence.    50   0.004  2
CB143721|CB143721.1 K-EST0197822 L16HLK3 Homo sapiens cDNA clone L16HLK3-17-C07 5', mRNA sequence.    38   0.068  3
AA226818|AA226818.1 zr20a04.r1 Stratagene NT2 neuronal precursor 937230 Homo sapiens cDNA clone IMAGE:663918 5' similar to gb:M22299 T-PLASTIN (HUMAN);, mRNA sequence.    38   0.094  3
BF724876|BF724876.1 bx09f12.y1 Human Iris cDNA (Un-normalized, unamplified): BX Homo sapiens cDNA clone bx09f12 5', mRNA sequence.    38   0.14   3
BE867815|BE867815.1 601443781F1 NIH_MGC_65 Homo sapiens cDNA clone IMAGE:3847604 5', mRNA sequence.    38   0.14   3
AU127916|AU127916.1 Homo sapiens cDNA clone:NT2RP2002345, 5' end, expressed in NT2 neuronal precursor cells after 2-weeks retinoic acid (RA) induction.    38   0.16   3
BE541512|BE541512.1 601067970F1 NIH_MGC_10 Homo sapiens cDNA clone IMAGE:3454241 5', mRNA sequence.    38   0.16   3
AU128700|AU128700.1 Homo sapiens cDNA clone:NT2RP2003992, 5' end, expressed in NT2 neuronal precursor cells after 2-weeks retinoic acid (RA) induction.    38   0.21   3
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36202_1(L36202|pid:none) Dictyostelium discoideum fimbrin (fimA...   429   e-119
(P54680) RecName: Full=Fimbrin;                                       429   e-119
AE014298_2678(AE014298|pid:none) Drosophila melanogaster chromos...   239   1e-61
FM992693_272(FM992693|pid:none) Candida dubliniensis CD36 chromo...   238   4e-61
CR858800_1(CR858800|pid:none) Pongo abelii mRNA; cDNA DKFZp459F2...   234   5e-60
BC031083_1(BC031083|pid:none) Homo sapiens plastin 1 (I isoform)...   234   5e-60
(Q14651) RecName: Full=Plastin-1; AltName: Full=Intestine-specif...   234   5e-60
AK290316_1(AK290316|pid:none) Homo sapiens cDNA FLJ78068 complet...   234   5e-60
(Q3V0K9) RecName: Full=Plastin-1;  &AK133070_1(AK133070|pid:none...   234   5e-60
BC094886_1(BC094886|pid:none) Xenopus tropicalis plastin 3 (T is...   234   6e-60
protein update 2009. 5.21
PSORT 

 psg: 0.88  gvh: 0.57  alm: 0.47  top: 0.20  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: extracellular, including cell wall
	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for FC-IC0832 is exc
5' end seq. ID FC-IC0832F
5' end seq. 
>FC-IC0832F.Seq
ACCTTCGTAGAGATTGTTAACGAATGGATCTACGCCTAAAGAATTCATCCAATTACGGAA
AGTCTTTTCTTCACGAGTCTCTTCAATTATAACAACATCTTCAACTGGTTCCAATGCTGG
ATGAGTATTGAAAAGATTGGCAACGAATGCTAAATTAAGTTTTTGGAAACCAGTTACGAT
ATCCTTTGGTTTAAGGAACTTCTTACAACCTAATTTATCGGCATTCTCTAAAACTTTAAC
AGCACGTTGATCTAAATTTGAGATATTCAAAGCAGAGGTTTCGACACCAGCATCCTTTGG
TGCGATTTGTTTCAAAAGGATTGTATAACATTCTGAATCTTTAATATCACCAGAGAAATT
CTTTACTCTTCTTTGTGAGCCAGCAGCGGCTAAATGATAATTGAACCATCTCAATAAGAT
CTCTTCAACTGGAAGTTTCAATAAATCTTCAATTGTTTCACCATCATGTAAAAGACGATA
CAACTCTGGATGATTAGTTAAATTAATACGTGCGAATAAACCAATCTTAATAATTTGCCA
TGTTAAACCCATAATTAAATGAGCTCTACCTTCAACTAAATCACCTGCACCAATATTAAC
AACATTACAACCAATNGCTTTTGCTGAATTAATACAAAGTNNNNNNNNNN
Length of 5' end seq. 650
3' end seq. ID FC-IC0832Z
3' end seq. 
>FC-IC0832Z.Seq
NNNNNNNNNNGTACNTTCGTAGAGATTGTTAACGAATGGATCTACGCCTAAAGAATTCAT
CCAATTACGGAAAGTCTTTTCTTCACGAGTCTCTTCAATTATAACAACATCTTCAACTGG
TTCCAATGCTGGATGAGTATTGAAAAGATTGGCAACGAATGCTAAATTAAGTTTTTGGAA
ACCAGTTACGATATCCTTTGGTTTAAGGAACTTCTTACAACCTAATTTATCGGCATTCTC
TAAAACTTTAACAGCACGTTGATCTAAATTTGAGATATTCAAAGCAGAGGTTTCGACACC
AGCATCCTTTGGTGCGATTTGTTTCAAAAGGATTGTATAACATTCTGAATCTTTAATATC
ACCAGAGAAATTCTTTACTCTTCTTTGTGAGCCAGCAGCGGCTAAATGATAATTGAACCA
TCTCAATAAGATCTCTTCAACTGGAAGTTTCAATAAATCTTCAATTGTTTCACCATCATG
TNANANNCGATGNNACTCTGGATGATNAGTTNAATTNATACGTGCGAATAAACCAATNTT
AATAATTTGCCATGTTAAACCCATAATTAAATGAGCTGCNACCTTCAAGTNAATCACNNG
CACCAATNTTCCTGTCATGCGTGCGTGTNGCTTATTGCATATATGAATACAAAGT
Length of 3' end seq. 655
Connected seq. ID FC-IC0832P
Connected seq. 
>FC-IC0832P.Seq
ACCTTCGTAGAGATTGTTAACGAATGGATCTACGCCTAAAGAATTCATCCAATTACGGAA
AGTCTTTTCTTCACGAGTCTCTTCAATTATAACAACATCTTCAACTGGTTCCAATGCTGG
ATGAGTATTGAAAAGATTGGCAACGAATGCTAAATTAAGTTTTTGGAAACCAGTTACGAT
ATCCTTTGGTTTAAGGAACTTCTTACAACCTAATTTATCGGCATTCTCTAAAACTTTAAC
AGCACGTTGATCTAAATTTGAGATATTCAAAGCAGAGGTTTCGACACCAGCATCCTTTGG
TGCGATTTGTTTCAAAAGGATTGTATAACATTCTGAATCTTTAATATCACCAGAGAAATT
CTTTACTCTTCTTTGTGAGCCAGCAGCGGCTAAATGATAATTGAACCATCTCAATAAGAT
CTCTTCAACTGGAAGTTTCAATAAATCTTCAATTGTTTCACCATCATGTAAAAGACGATA
CAACTCTGGATGATTAGTTAAATTAATACGTGCGAATAAACCAATCTTAATAATTTGCCA
TGTTAAACCCATAATTAAATGAGCTCTACCTTCAACTAAATCACCTGCACCAATATTAAC
AACATTACAACCAATNGCTTTTGCTGAATTAATACAAAGT----------GTACNTTCGT
AGAGATTGTTAACGAATGGATCTACGCCTAAAGAATTCATCCAATTACGGAAAGTCTTTT
CTTCACGAGTCTCTTCAATTATAACAACATCTTCAACTGGTTCCAATGCTGGATGAGTAT
TGAAAAGATTGGCAACGAATGCTAAATTAAGTTTTTGGAAACCAGTTACGATATCCTTTG
GTTTAAGGAACTTCTTACAACCTAATTTATCGGCATTCTCTAAAACTTTAACAGCACGTT
GATCTAAATTTGAGATATTCAAAGCAGAGGTTTCGACACCAGCATCCTTTGGTGCGATTT
GTTTCAAAAGGATTGTATAACATTCTGAATCTTTAATATCACCAGAGAAATTCTTTACTC
TTCTTTGTGAGCCAGCAGCGGCTAAATGATAATTGAACCATCTCAATAAGATCTCTTCAA
CTGGAAGTTTCAATAAATCTTCAATTGTTTCACCATCATGTNANANNCGATGNNACTCTG
GATGATNAGTTNAATTNATACGTGCGAATAAACCAATNTTAATAATTTGCCATGTTAAAC
CCATAATTAAATGAGCTGCNACCTTCAAGTNAATCACNNGCACCAATNTTCCTGTCATGC
GTGCGTGTNGCTTATTGCATATATGAATACAAAGT
Length of connected seq. 1285
Full length Seq ID -
Full length Seq. -
Length of full length seq. -