NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0826
Library FC-IC
(Link to library)
Clone ID FC-IC0826
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08366-1
Original site URL
Representative seq. ID FC-IC0826E
(Link to Original site)
Representative DNA sequence 
>FC-IC0826 (FC-IC0826Q) /CSM/FC-IC/FC-IC0826Q.Seq.d/
CAGTCTCAACCTTTATAACATTACCAGAGATAATCATTGGTTATTATGATGTTGGTTGCT
TTATTTTAGCAAGTTTTTTATTTTTATTTTTTGGTATTAGTTTAGTAGTAAAATTTAGAC
ATCAACAAAAGAATTTTGCTGAAGATAAAAGAAAAGTAATCTTACGAAGAATCACTTTTT
TAACTGGTTTAATTTGTTGTTGTTTCCTTTTACGTGCTGCTATAACTTGTTTTGCTCTTA
TTGATTTACATTTAATTTCTGGGTATTGGTGGTGGTTTGATGGAGCTTATTTTACAGTTT
TAGAGATTGT
sequence update 2001.11.10
Translated Amino Acid sequence 
VSTFITLPEIIIGYYDVGCFILASFLFLFFGISLVVKFRHQQKNFAEDKRKVILRRITFL
TGLICCCFLLRAAITCFALIDLHLISGYWWWFDGAYFTVLEI
Translated Amino Acid sequence (All Frames) 
Frame A:
qsqpl*hyqr*slvimmlvalf*qvfyfyflvlv***nldinkrillkikek*syeeslf
*lv*fvvvsfyvll*lvlllliyi*flgiggglmelilqf*rl


Frame B:
slnlynitrdnhwll*cwllyfskffififwy*fsski*tstkefc*r*kksnltknhff
nwfnlllfpftccynlfcsy*ftfnfwvlvvv*wslfysfrdc


Frame C:
VSTFITLPEIIIGYYDVGCFILASFLFLFFGISLVVKFRHQQKNFAEDKRKVILRRITFL
TGLICCCFLLRAAITCFALIDLHLISGYWWWFDGAYFTVLEI
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0826 (FC-IC0826Q) /CSM/FC-IC/FC-IC0826Q.Seq.d/                   432   e-120
SFG644 (SFG644Q) /CSM/SF/SFG6-B/SFG644Q.Seq.d/                        137   1e-31
SHL462 (SHL462Q) /CSM/SH/SHL4-C/SHL462Q.Seq.d/                         40   0.019
AHG668 (AHG668Q) /CSM/AH/AHG6-C/AHG668Q.Seq.d/                         40   0.019
VHI443 (VHI443Q) /CSM/VH/VHI4-B/VHI443Q.Seq.d/                         36   0.30
VFC538 (VFC538Q) /CSM/VF/VFC5-B/VFC538Q.Seq.d/                         36   0.30
VFB111 (VFB111Q) /CSM/VF/VFB1-A/VFB111Q.Seq.d/                         36   0.30
SSM727 (SSM727Q) /CSM/SS/SSM7-B/SSM727Q.Seq.d/                         36   0.30
SSA461 (SSA461Q) /CSM/SS/SSA4-C/SSA461Q.Seq.d/                         36   0.30
CHS353 (CHS353Q) /CSM/CH/CHS3-C/CHS353Q.Seq.d/                         36   0.30
own update 2002.10. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC109180|AC109180.12 Mus musculus chromosome 10 clone RP23-13J14 map 10, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    38   0.020  5
AL391377|AL391377.16 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-232C1.    36   0.053  7
AC090312|AC090312.7 Homo sapiens chromosome 18, clone RP11-752P2, complete sequence.    36   0.078  5
AL845483|AL845483.4 Mouse DNA sequence from clone RP23-256M16 on chromosome 2.    36   0.100  5
AL627100|AL627100.4 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-100A19.    38   0.11   3
BX897746|BX897746.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    38   0.12   7
AC098007|AC098007.5 Rattus norvegicus clone CH230-105P19, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36   0.19   6
AL365510|AL365510.32 Human DNA sequence from clone RP11-429H9 on chromosome 10.    36   0.22   4
AL772366|AL772366.7 Mouse DNA sequence from clone RP23-171C7 on chromosome 2.    38   0.23   5
AC146511|AC146511.3 Pan troglodytes BAC clone RP43-72N15 from 7, complete sequence.    34   0.34   6
dna update 2004. 2. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L22527_1(L22527|pid:none) Mus sp. melanocortin-5 receptor gene, ...    36   0.49
I49008(I49008;A54245;JC2244) melanocortin-5 receptor - mouse  &U...    36   0.49
T26270(T26270) hypothetical protein W07G1.6 - Caenorhabditis ele...    35   0.83
(P35345) RecName: Full=Melanocortin receptor 5; AltName: Full=MC...    34   1.4
EF192050_1(EF192050|pid:none) Mesocricetus auratus melancortin 5...    34   1.9
DQ437742_64(DQ437742|pid:none) Pseudomonas aeruginosa strain 607...    32   5.4
T18760(T18760)hypothetical protein B0462.2 - Caenorhabditis eleg...    32   7.0
CP000521_1913(CP000521|pid:none) Acinetobacter baumannii ATCC 17...    32   7.0
AB036427_1(AB036427|pid:none) Arabidopsis thaliana mRNA for TOM3...    32   7.0
FJ915232_1(FJ915232|pid:none) Gallus gallus isolate 714 TLR15 ge...    32   9.2
protein update 2009. 7. 1
PSORT 

 psg: 0.75  gvh: 0.65  alm: 0.18  top: 0.97  tms: 0.13  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 16.0 %: plasma membrane
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for FC-IC0826 is end
5' end seq. ID FC-IC0826F
5' end seq. 
>FC-IC0826F.Seq
ACAGTCTCAACCTTTATAACATTACCAGAGATAATCATTGGTTATTATGATGTTGGTTGC
TTTATTTTAGCAAGTTTTTTATTTTTATTTTTTGGTATTAGTTTAGTAGTAAAATTTAGA
CATCAACAAAAGAATTTTGCTGAAGATAAAAGAAAAGTAATCTTACGAAGAATCACTTTT
TTAACTGGTTTAATTTGTTGTTGTTTCCTTTTACGTGCTGCTATAACTTGTTTTGCTCTT
ATTGATTTACATTTAATTTCTGGGTATTGGTGGTGGTTTGATGGAGCTTATTTTACAGTT
NTAGAGATTGTNNNNNNNNNN
Length of 5' end seq. 321
3' end seq. ID FC-IC0826Z
3' end seq. 
>FC-IC0826Z.Seq
NNNNNNNNNNGCAGTCTCAACCTTTATAACATTANCAGAGATAATCATTGGTTATTATGA
TGTTGGTTGNTTTATTTTAGCAAGTTTTTTATTTTTATTTTTTGGTATTAGTTTAGTAGT
AAAATTTAGACATCAACAAAAGAATTTTGCTGAAGATAAAAGAAAAGTAATCTTACGAAG
AATCACTTTTTTAACTGGTTTAATTTGTTGTTGTTTCCTTTTACGTGCTGCTATAACTTG
TTTTGCTCTTATTGATTTACATTTAATTTCTGGGTATTGGTGGTGGTTTGATGGAGCTTA
TTTTACAGTTTTAGAGATTGT
Length of 3' end seq. 321
Connected seq. ID FC-IC0826P
Connected seq. 
>FC-IC0826P.Seq
ACAGTCTCAACCTTTATAACATTACCAGAGATAATCATTGGTTATTATGATGTTGGTTGC
TTTATTTTAGCAAGTTTTTTATTTTTATTTTTTGGTATTAGTTTAGTAGTAAAATTTAGA
CATCAACAAAAGAATTTTGCTGAAGATAAAAGAAAAGTAATCTTACGAAGAATCACTTTT
TTAACTGGTTTAATTTGTTGTTGTTTCCTTTTACGTGCTGCTATAACTTGTTTTGCTCTT
ATTGATTTACATTTAATTTCTGGGTATTGGTGGTGGTTTGATGGAGCTTATTTTACAGTT
NTAGAGATTGT----------GCAGTCTCAACCTTTATAACATTANCAGAGATAATCATT
GGTTATTATGATGTTGGTTGNTTTATTTTAGCAAGTTTTTTATTTTTATTTTTTGGTATT
AGTTTAGTAGTAAAATTTAGACATCAACAAAAGAATTTTGCTGAAGATAAAAGAAAAGTA
ATCTTACGAAGAATCACTTTTTTAACTGGTTTAATTTGTTGTTGTTTCCTTTTACGTGCT
GCTATAACTTGTTTTGCTCTTATTGATTTACATTTAATTTCTGGGTATTGGTGGTGGTTT
GATGGAGCTTATTTTACAGTTTTAGAGATTGT
Length of connected seq. 622
Full length Seq ID FC-IC0826E
Full length Seq. 
>FC-IC0826E.Seq
CAGTCTCAACCTTTATAACATTACCAGAGATAATCATTGGTTATTATGATGTTGGTTGCT
TTATTTTAGCAAGTTTTTTATTTTTATTTTTTGGTATTAGTTTAGTAGTAAAATTTAGAC
ATCAACAAAAGAATTTTGCTGAAGATAAAAGAAAAGTAATCTTACGAAGAATCACTTTTT
TAACTGGTTTAATTTGTTGTTGTTTCCTTTTACGTGCTGCTATAACTTGTTTTGCTCTTA
TTGATTTACATTTAATTTCTGGGTATTGGTGGTGGTTTGATGGAGCTTATTTTACAGTTT
TAGAGATTGT
Length of full length seq. 310