FC-IC0806
Library FC-IC
(Link to library)
Clone ID FC-IC0806
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID FC-IC0806E
(Link to Original site)
Representative DNA sequence
>FC-IC0806 (FC-IC0806Q) /CSM/FC-IC/FC-IC0806Q.Seq.d/
ACCAATCTATGAAGGTTATGCCTTACCACACGCCATCTTACGTTTAGATTTAGCTGGTCG
TGATCTTACTGATTACATGATGAAAATCTTAACTGAACGTGGTTACTCATTCACCACCAC
TACTGAAAGAGAAATCGTCAGAGATATCAAAGAAAAATTAGCCTACGTCGCCCTCGACTT
TGAAGCTGAAATGCAAACTGCTGCCTCATCATCAGCCCTCGAAAAATCATACGAATTACC
AGACGGTCAAGTCATCACCATCGGTAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCA
ACCATCATTCTTAGGTATGGAATCTGCTGGTATCCACGAAACCACCTACAACTCCATCAT
GAAATGTGATGTTGATATCCGTAAAGATTTATACGGTAACGTCGTCTTATCCGGTGGTAC
GTAAACCATTTGAACCATCTTCAATTTCAGATTCAACAACTGGAGTATAACGTTT
sequence update 2001.11.10
Translated Amino Acid sequence
PIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTTEREIVRDIKEKLAYVALDF
EAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIM
KCDVDIRKDLYGNVVLSGGT*ti*tifnfrfnnwsitf


Translated Amino Acid sequence (All Frames)
Frame A:
tnl*rlclttrhltfrfsws*sy*lhdenln*twllihhhy*krnrqryqrkislrrprl
*s*nanccliisprkiiritrrsshhhr**tfplprsplptiilrygicwyprnhlqlhh
em*c*yp*rfir*rrlirwyvnhlnhlqfqiqqleynv


Frame B:
PIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTTEREIVRDIKEKLAYVALDF
EAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIM
KCDVDIRKDLYGNVVLSGGT*ti*tifnfrfnnwsitf


Frame C:
qsmkvmpyhtpsyv*i*lvvillit**ks*lnvvthsppllkeksseiskkn*ptspstl
klkckllphhqpsknhtnyqtvksspsvmnvsvaqkpssnhhs*vwnllvstkppttps*
nvmlisvkiytvtssypvvrkpfepssisdsttgv*r


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC0806 (FC-IC0806Q) /CSM/FC-IC/FC-IC0806Q.Seq.d/ 942 0.0
FC-IC0958 (FC-IC0958Q) /CSM/FC-IC/FC-IC0958Q.Seq.d/ 813 0.0
VFO747 (VFO747Q) /CSM/VF/VFO7-B/VFO747Q.Seq.d/ 801 0.0
VFJ848 (VFJ848Q) /CSM/VF/VFJ8-B/VFJ848Q.Seq.d/ 801 0.0
VFJ342 (VFJ342Q) /CSM/VF/VFJ3-B/VFJ342Q.Seq.d/ 795 0.0
VHQ271 (VHQ271Q) /CSM/VH/VHQ2-C/VHQ271Q.Seq.d/ 793 0.0
VHN439 (VHN439Q) /CSM/VH/VHN4-B/VHN439Q.Seq.d/ 793 0.0
VHK436 (VHK436Q) /CSM/VH/VHK4-B/VHK436Q.Seq.d/ 793 0.0
VFO679 (VFO679Q) /CSM/VF/VFO6-D/VFO679Q.Seq.d/ 793 0.0
VFO588 (VFO588Q) /CSM/VF/VFO5-D/VFO588Q.Seq.d/ 793 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 793 0.0 2
X03281|X03281.1 Dictyostelium discoideum gene for actin A8. 793 0.0 1
M14146|M14146.1 D.discoideum actin 15 gene, complete cds. 730 0.0 1
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 730 0.0 1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 712 0.0 1
X03282|X03282.1 dictyostelium discoideum gene for actin A12. 587 e-164 1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 587 e-164 5
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 563 e-157 6
U25660|U25660.1 Dictyostelium discoideum actin gene, partial cds. 492 e-135 1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 492 e-135 1
dna update 2004. 2. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa... 276 1e-73
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti... 276 1e-73
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum) 276 1e-73
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp... 274 6e-73
(Q553U6) RecName: Full=Putative actin-22; &AC116305_3(AC116305|... 274 8e-73
(P02576) RecName: Full=Actin, plasmodial isoform; &ATFY(A29044;... 273 1e-72
EF455784_1(EF455784|pid:none) Hyperamoeba sp. ATCC PRA-39 actin ... 273 1e-72
AY294153_1(AY294153|pid:none) Platyamoeba placida actin mRNA, pa... 273 2e-72
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli... 272 2e-72
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1; 272 3e-72
protein update 2009. 7. 1
PSORT

psg: 0.75 gvh: 0.38 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: mitochondrial
8.0 %: cytoskeletal

>> prediction for FC-IC0806 is cyt

5' end seq. ID FC-IC0806F
5' end seq.
>FC-IC0806F.Seq
ACCAATCTATGAAGGTTATGCCTTACCACACGCCATCTTACGTTTAGATTTAGCTGGTCG
TGATCTTACTGATTACATGATGAAAATCTTAACTGAACGTGGTTACTCATTCACCACCAC
TACTGAAAGAGAAATCGTCAGAGATATCAAAGAAAAATTAGCCTACGTCGCCCTCGACTT
TGAAGCTGAAATGCAAACTGCTGCCTCATCATCAGCCCTCGAAAAATCATACGAATTACC
AGACGGTCAAGTCATCACCATCGGTAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCA
ACCATCATTCTTAGGTATGGAATCTGCTGGTATCCACGAAACCACCTACAACTCCATCAT
GAAATGTGATGTTGATATCCGTAAAGATTTATACGGTAACGTCGTCTTATCCGGTGGTAC
GTAAACCATTTGAACCATCTTCAATTTCAGATTCAACAACTGGAGTATAACGTTTNNNNN
NNNNN
Length of 5' end seq. 485
3' end seq. ID FC-IC0806Z
3' end seq.
>FC-IC0806Z.Seq
NNNNNNNNNNACCAATCTATGAAGGTTATGCCTTACCACACGCCATCTTACGTTTAGATT
TAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGAACGTGGTTACTCAT
TCACCACCACTACTGAAAGAGAAATCGTCAGAGATATCAAAGAAAAATTAGCCTACGTCG
CCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTCATCATCAGCCCTCGAAAAATCAT
ACGAATTACCAGACGGTCAAGTCATCACCATCGGTAATGAACGTTTCCGTTGCCCAGAAG
CCCTCTTCCAACCATCATTCTTAGGTATGGAATCTGCTGGTATCCACGAAACCACCTACA
ACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTATACGGTAACGTCGTCTTAT
CCGGTGGTACGTAAACCATTTGAACCATCTTCAATTTCAGATTCAACAACTGGAGTATAA
CGTTT
Length of 3' end seq. 485
Connected seq. ID FC-IC0806P
Connected seq.
>FC-IC0806P.Seq
ACCAATCTATGAAGGTTATGCCTTACCACACGCCATCTTACGTTTAGATTTAGCTGGTCG
TGATCTTACTGATTACATGATGAAAATCTTAACTGAACGTGGTTACTCATTCACCACCAC
TACTGAAAGAGAAATCGTCAGAGATATCAAAGAAAAATTAGCCTACGTCGCCCTCGACTT
TGAAGCTGAAATGCAAACTGCTGCCTCATCATCAGCCCTCGAAAAATCATACGAATTACC
AGACGGTCAAGTCATCACCATCGGTAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCA
ACCATCATTCTTAGGTATGGAATCTGCTGGTATCCACGAAACCACCTACAACTCCATCAT
GAAATGTGATGTTGATATCCGTAAAGATTTATACGGTAACGTCGTCTTATCCGGTGGTAC
GTAAACCATTTGAACCATCTTCAATTTCAGATTCAACAACTGGAGTATAACGTTT-----
-----ACCAATCTATGAAGGTTATGCCTTACCACACGCCATCTTACGTTTAGATTTAGCT
GGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGAACGTGGTTACTCATTCACC
ACCACTACTGAAAGAGAAATCGTCAGAGATATCAAAGAAAAATTAGCCTACGTCGCCCTC
GACTTTGAAGCTGAAATGCAAACTGCTGCCTCATCATCAGCCCTCGAAAAATCATACGAA
TTACCAGACGGTCAAGTCATCACCATCGGTAATGAACGTTTCCGTTGCCCAGAAGCCCTC
TTCCAACCATCATTCTTAGGTATGGAATCTGCTGGTATCCACGAAACCACCTACAACTCC
ATCATGAAATGTGATGTTGATATCCGTAAAGATTTATACGGTAACGTCGTCTTATCCGGT
GGTACGTAAACCATTTGAACCATCTTCAATTTCAGATTCAACAACTGGAGTATAACGTTT
Length of connected seq. 950
Full length Seq ID FC-IC0806E
Full length Seq.
>FC-IC0806E.Seq
ACCAATCTATGAAGGTTATGCCTTACCACACGCCATCTTACGTTTAGATTTAGCTGGTCG
TGATCTTACTGATTACATGATGAAAATCTTAACTGAACGTGGTTACTCATTCACCACCAC
TACTGAAAGAGAAATCGTCAGAGATATCAAAGAAAAATTAGCCTACGTCGCCCTCGACTT
TGAAGCTGAAATGCAAACTGCTGCCTCATCATCAGCCCTCGAAAAATCATACGAATTACC
AGACGGTCAAGTCATCACCATCGGTAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCA
ACCATCATTCTTAGGTATGGAATCTGCTGGTATCCACGAAACCACCTACAACTCCATCAT
GAAATGTGATGTTGATATCCGTAAAGATTTATACGGTAACGTCGTCTTATCCGGTGGTAC
GTAAACCATTTGAACCATCTTCAATTTCAGATTCAACAACTGGAGTATAACGTTT
Length of full length seq. 475