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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0794
Library FC-IC
(Link to library)
Clone ID FC-IC0794
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16491-1
Original site URL
Representative seq. ID FC-IC0794E
(Link to Original site)
Representative DNA sequence 
>FC-IC0794 (FC-IC0794Q) /CSM/FC-IC/FC-IC0794Q.Seq.d/
ACCAAACTTGCTTCTGATGGTTTAAAGGGTCGTGTCTACGAAGTTTCACTCGCTGATATG
AAAGACGATGAATCCCAAGTCTTCAGAAAGATCAAATTAAGAGCTGAAGAAGTTGAAGGT
AGAAACGTTTTAACCAACTTTTACGGTATGGATTTAACCTCAGACAAACTCCGTTCATTA
ATCCACAAATGGTCCACCTTGATCGAATGTTTTGTTGATGTTAAGACCACTGATGGTTAT
TTCCTCCGTGTCTTTGCCATCTGTTTCACCAAAAAGGGTGAATCCCAAAAGAAAAAGACC
TCATACGCCAAGACCTCCCGTGTTAAGGCTATCCGTAAGAAGATGGTTGACATTTTAACC
GAAACCGTCTCATCCAACGACCTCAAAACCGTTGTTGACTATTTAATTGGTGTCTCATTA
AACGGTGTTACCACTAACGCCTCTGGTTTTGCCCCAACCCTCGCTGAAAAAATCAGAATC
GAAGGTTCATCAATCTTCCCAATCCACAACGTCTTCATCAGAAAGGTTAAAGTCCTCAAG
ACTCCAAAAGTTGATGCTGCTAAATTATCTGAACTCTATGCTTCATCTGCCACCTNAACC
ATCGCCCCAACTGAAGAAGTAGGT
sequence update 2001.11.10
Translated Amino Acid sequence 
TKLASDGLKGRVYEVSLADMKDDESQVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKLRSL
IHKWSTLIECFVDVKTTDGYFLRVFAICFTKKGESQKKKTSYAKTSRVKAIRKKMVDILT
ETVSSNDLKTVVDYLIGVSLNGVTTNASGFAPTLAEKIRIEGSSIFPIHNVFIRKVKVLK
TPKVDAAKLSELYASSATXTIAPTEEVG
Translated Amino Acid sequence (All Frames) 
Frame A:
TKLASDGLKGRVYEVSLADMKDDESQVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKLRSL
IHKWSTLIECFVDVKTTDGYFLRVFAICFTKKGESQKKKTSYAKTSRVKAIRKKMVDILT
ETVSSNDLKTVVDYLIGVSLNGVTTNASGFAPTLAEKIRIEGSSIFPIHNVFIRKVKVLK
TPKVDAAKLSELYASSATXTIAPTEEVG


Frame B:
pnlllmv*rvvstkfhsli*ktmnpkssersn*elkklkvetf*ptftvwi*pqtnsvh*
stngpp*snvllmlrplmvissvslpsvspkrvnpkrkrphtprppvlrlsvrrwltf*p
kpshpttskpllti*lvsh*tvlpltplvlpqpslkkseskvhqssqsttssserlkssr
lqklmllnylnsmlhlppxpspqlkk*


Frame C:
qtcf*wfkgsclrsftr*yerr*ipslqkdqiks*rs*r*krfnqllrygfnlrqtpfin
pqmvhldrmfc*c*dh*wlfppclchlfhqkg*ipkekdlirqdlpc*gyp*edg*hfnr
nrliqrpqnrc*lfnwclikrcyh*rlwfcpnpr*knqnrrfinlpnpqrlhqkg*spqd
sks*cc*ii*tlcfichlnhrpn*rsr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK462 (VSK462Q) /CSM/VS/VSK4-C/VSK462Q.Seq.d/                       1231   0.0
VSJ445 (VSJ445Q) /CSM/VS/VSJ4-B/VSJ445Q.Seq.d/                       1231   0.0
VSJ141 (VSJ141Q) /CSM/VS/VSJ1-B/VSJ141Q.Seq.d/                       1231   0.0
VSH214 (VSH214Q) /CSM/VS/VSH2-A/VSH214Q.Seq.d/                       1231   0.0
VSF675 (VSF675Q) /CSM/VS/VSF6-D/VSF675Q.Seq.d/                       1231   0.0
VSD331 (VSD331Q) /CSM/VS/VSD3-B/VSD331Q.Seq.d/                       1231   0.0
FC-IC0794 (FC-IC0794Q) /CSM/FC-IC/FC-IC0794Q.Seq.d/                  1231   0.0
FC-BS17 (FC-BS17Q) /CSM/FC/FC-BS/FC-BS17Q.Seq.d/                     1231   0.0
FC-AK15 (FC-AK15Q) /CSM/FC/FC-AK/FC-AK15Q.Seq.d/                     1231   0.0
FC-AG13 (FC-AG13Q) /CSM/FC/FC-AG/FC-AG13Q.Seq.d/                     1231   0.0
own update 2001.11.18
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.  1215   0.0    1
AL397917|AL397917.1 T3 end of clone AS0AA005H09 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    60   9e-06  2
AL404835|AL404835.1 T3 end of clone XAT0AA002H02 of library XAT0AA from strain CBS 4311  of Saccharomyces servazzii.    48   1e-04  2
CF643875|CF643875.1 K13_F09 Filamentous Forced Diploid Ustilago maydis cDNA 3', mRNA sequence.    40   9e-04  2
CF639788|CF639788.1 D19_G01 Filamentous Forced Diploid Ustilago maydis cDNA 3', mRNA sequence.    40   0.001  2
CD490233|CD490233.1 T34_G02 Teliospore Ustilago maydis cDNA 5', mRNA sequence.    40   0.001  2
CD490021|CD490021.1 T31_E07 Teliospore Ustilago maydis cDNA 5', mRNA sequence.    40   0.001  2
CF642755|CF642755.1 D55_F01 Filamentous Forced Diploid Ustilago maydis cDNA 3', mRNA sequence.    40   0.001  2
CD489854|CD489854.1 T29_A07 Teliospore Ustilago maydis cDNA 5', mRNA sequence.    40   0.001  2
CF639410|CF639410.1 D15_D02 Filamentous Forced Diploid Ustilago maydis cDNA 3', mRNA sequence.    40   0.001  2
dna update 2004. 2. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ZW5) RecName: Full=40S ribosomal protein S3a;                     400   e-110
AC116977_69(AC116977|pid:none) Dictyostelium discoideum chromoso...   399   e-110
EU683898_1(EU683898|pid:none) Chironomus riparius ribosomal prot...   210   2e-53
DQ252485_1(DQ252485|pid:none) Solanum tuberosum clone 048H05 cyc...   209   7e-53
DQ268849_1(DQ268849|pid:none) Solanum tuberosum clone 155F06 cyc...   209   7e-53
DQ241862_1(DQ241862|pid:none) Solanum tuberosum clone 027B03 40S...   207   2e-52
(P49395) RecName: Full=40S ribosomal protein S3a; AltName: Full=...   207   3e-52
AY603568_1(AY603568|pid:none) Culicoides sonorensis clone CsRPS3...   206   4e-52
DQ252490_1(DQ252490|pid:none) Solanum tuberosum clone 059D09 cyc...   206   4e-52
EU124994_1(EU124994|pid:none) Eurythoe complanata ribosomal prot...   206   4e-52
protein update 2009. 7. 1
PSORT 

 psg: 0.67  gvh: 0.30  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.13  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for FC-IC0794 is nuc
5' end seq. ID FC-IC0794F
5' end seq. 
>FC-IC0794F.Seq
ACCAAACTTGCTTCTGATGGTTTAAAGGGTCGTGTCTACGAAGTTTCACTCGCTGATATG
AAAGACGATGAATCCCAAGTCTTCAGAAAGATCAAATTAAGAGCTGAAGAAGTTGAAGGT
AGAAACGTTTTAACCAACTTTTACGGTATGGATTTAACCTCAGACAAACTCCGTTCATTA
ATCCACAAATGGTCCACCTTGATCGAATGTTTTGTTGATGTTAAGACCACTGATGGTTAT
TTCCTCCGTGTCTTTGCCATCTGTTTCACCAAAAAGGGTGAATCCCAAAAGAAAAAGACC
TCATACGCCAAGACCTCCCGTGTTAAGGCTATCCGTAAGAAGATGGTTGACATTTTAACC
GAAACCGTCTCATCCAACGACCTCAAAACCGTTGTTGACTATTTAATTGGTGTCTCATTA
AACGGTGTTACCACTAACGCCTCTGGTTTTGCCCCAACCCTCGCTGAAAAAATCAGAATC
GAAGGTTCATCAATCTTCCCAATCCACAACGTCTTCATCAGAAAGGTTAAAGTCCTCAAG
ACTCCAAAAGTTGATGCTGCTAAATTATCTGAACTCTATGCTTCATCTGCCACCTTAACC
ATCGCCCCAACTGAAGAAGTAGGTNNNNNNNNNN
Length of 5' end seq. 634
3' end seq. ID FC-IC0794Z
3' end seq. 
>FC-IC0794Z.Seq
NNNNNNNNNNACCAAACTTGCTTCTGATGGTTTAAAGGGTCGTGTCTACGAAGTTTCACT
CGCTGATATGAAAGACGATGAATCCCAAGTCTTCAGAAAGATCAAATTAAGAGCTGAAGA
AGTTGAAGGTAGAAACGTTTTAACCAACTTTTACGGTATGGATTTAACCTCAGACAAACT
CCGTTCATTAATCCACAAATGGTCCACCTTGATCGAATGTTTTGTTGATGTTAAGACCAC
TGATGGTTATTTCCTCCGTGTCTTTGCCATCTGTTTCACCAAAAAGGGTGAATCCCAAAA
GAAAAAGACCTCATACGCCAAGACCTCCCGTGTTAAGGCTATCCGTAAGAAGATGGTTGA
CATTTTAACCGAAACCGTCTCATCCAACGACCTCAAAACCGTTGTTGACTATTTAATTGG
TGTCTCATTAAACGGTGTTACCACTAACGCCTCTGGTTTTGCCCCAACCCTCGCTGAAAA
AATCAGAATCGAAGGTTCATCAATCTTCCCAATCCACAACGTCTTCATCAGAAAGGTTAA
AGTCCTCAAGACTCCAAAAGTTGATGCTGCTAAATTATCTGAACTCTATGCTTCATCTGC
CACCTCAACCATCGCCCCAACTGAAGAAGTAGGT
Length of 3' end seq. 634
Connected seq. ID FC-IC0794P
Connected seq. 
>FC-IC0794P.Seq
ACCAAACTTGCTTCTGATGGTTTAAAGGGTCGTGTCTACGAAGTTTCACTCGCTGATATG
AAAGACGATGAATCCCAAGTCTTCAGAAAGATCAAATTAAGAGCTGAAGAAGTTGAAGGT
AGAAACGTTTTAACCAACTTTTACGGTATGGATTTAACCTCAGACAAACTCCGTTCATTA
ATCCACAAATGGTCCACCTTGATCGAATGTTTTGTTGATGTTAAGACCACTGATGGTTAT
TTCCTCCGTGTCTTTGCCATCTGTTTCACCAAAAAGGGTGAATCCCAAAAGAAAAAGACC
TCATACGCCAAGACCTCCCGTGTTAAGGCTATCCGTAAGAAGATGGTTGACATTTTAACC
GAAACCGTCTCATCCAACGACCTCAAAACCGTTGTTGACTATTTAATTGGTGTCTCATTA
AACGGTGTTACCACTAACGCCTCTGGTTTTGCCCCAACCCTCGCTGAAAAAATCAGAATC
GAAGGTTCATCAATCTTCCCAATCCACAACGTCTTCATCAGAAAGGTTAAAGTCCTCAAG
ACTCCAAAAGTTGATGCTGCTAAATTATCTGAACTCTATGCTTCATCTGCCACCTTAACC
ATCGCCCCAACTGAAGAAGTAGGT----------ACCAAACTTGCTTCTGATGGTTTAAA
GGGTCGTGTCTACGAAGTTTCACTCGCTGATATGAAAGACGATGAATCCCAAGTCTTCAG
AAAGATCAAATTAAGAGCTGAAGAAGTTGAAGGTAGAAACGTTTTAACCAACTTTTACGG
TATGGATTTAACCTCAGACAAACTCCGTTCATTAATCCACAAATGGTCCACCTTGATCGA
ATGTTTTGTTGATGTTAAGACCACTGATGGTTATTTCCTCCGTGTCTTTGCCATCTGTTT
CACCAAAAAGGGTGAATCCCAAAAGAAAAAGACCTCATACGCCAAGACCTCCCGTGTTAA
GGCTATCCGTAAGAAGATGGTTGACATTTTAACCGAAACCGTCTCATCCAACGACCTCAA
AACCGTTGTTGACTATTTAATTGGTGTCTCATTAAACGGTGTTACCACTAACGCCTCTGG
TTTTGCCCCAACCCTCGCTGAAAAAATCAGAATCGAAGGTTCATCAATCTTCCCAATCCA
CAACGTCTTCATCAGAAAGGTTAAAGTCCTCAAGACTCCAAAAGTTGATGCTGCTAAATT
ATCTGAACTCTATGCTTCATCTGCCACCTCAACCATCGCCCCAACTGAAGAAGTAGGT
Length of connected seq. 1248
Full length Seq ID FC-IC0794E
Full length Seq. 
>FC-IC0794E.Seq
ACCAAACTTGCTTCTGATGGTTTAAAGGGTCGTGTCTACGAAGTTTCACTCGCTGATATG
AAAGACGATGAATCCCAAGTCTTCAGAAAGATCAAATTAAGAGCTGAAGAAGTTGAAGGT
AGAAACGTTTTAACCAACTTTTACGGTATGGATTTAACCTCAGACAAACTCCGTTCATTA
ATCCACAAATGGTCCACCTTGATCGAATGTTTTGTTGATGTTAAGACCACTGATGGTTAT
TTCCTCCGTGTCTTTGCCATCTGTTTCACCAAAAAGGGTGAATCCCAAAAGAAAAAGACC
TCATACGCCAAGACCTCCCGTGTTAAGGCTATCCGTAAGAAGATGGTTGACATTTTAACC
GAAACCGTCTCATCCAACGACCTCAAAACCGTTGTTGACTATTTAATTGGTGTCTCATTA
AACGGTGTTACCACTAACGCCTCTGGTTTTGCCCCAACCCTCGCTGAAAAAATCAGAATC
GAAGGTTCATCAATCTTCCCAATCCACAACGTCTTCATCAGAAAGGTTAAAGTCCTCAAG
ACTCCAAAAGTTGATGCTGCTAAATTATCTGAACTCTATGCTTCATCTGCCACCTNAACC
ATCGCCCCAACTGAAGAAGTAGGT
Length of full length seq. 624