NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0790
Library FC-IC
(Link to library)
Clone ID FC-IC0790
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14940-1
Original site URL
Representative seq. ID FC-IC0790E
(Link to Original site)
Representative DNA sequence 
>FC-IC0790 (FC-IC0790Q) /CSM/FC-IC/FC-IC0790Q.Seq.d/
ACCAGATGCTAAAATCAGAATTTTCGATTTAGGTCGTAAGAAAGCATCAACTGATGAATT
CCCATTATGTGTTCATCTCATCTCCCTCGAAAAAGAACAACTTTCATCAGAAGCCATTGA
AGCTGGTCGTATTTCATGTAACAAATACATCTCAAAGACTGGTGGTAAAGATTCATTCCA
CATGAGAGTCAGAGTTCACCCATGGCACGTATTACGTATTAACAAGATGCTTTCATGCGC
TGGTGCAGATAGACTTCAAACCGGTATGAGAGGTGCCTTCGGTAAACCAATGGGT
sequence update 2001.11.10
Translated Amino Acid sequence 
PDAKIRIFDLGRKKASTDEFPLCVHLISLEKEQLSSEAIEAGRISCNKYISKTGGKDSFH
MRVRVHPWHVLRINKMLSCAGADRLQTGMRGAFGKPMG
Translated Amino Acid sequence (All Frames) 
Frame A:
trc*nqnfrfrs*esin**ipimcsshlprkrttfirsh*swsyfm*qihlkdww*rfip
hesqsspmarity*qdafmrwcr*tsnryerclr*tng


Frame B:
PDAKIRIFDLGRKKASTDEFPLCVHLISLEKEQLSSEAIEAGRISCNKYISKTGGKDSFH
MRVRVHPWHVLRINKMLSCAGADRLQTGMRGAFGKPMG


Frame C:
qmlksefsi*vvrkhqlmnshyvfisspskknnfhqkplklvvfhvtntsqrlvvkihst
*esefthgtyyvltrcfhalvqidfkpv*evpsvnqw
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0790 (FC-IC0790Q) /CSM/FC-IC/FC-IC0790Q.Seq.d/                   585   e-166
FC-AV10 (FC-AV10Q) /CSM/FC/FC-AV/FC-AV10Q.Seq.d/                      585   e-166
FC-AS07 (FC-AS07Q) /CSM/FC/FC-AS/FC-AS07Q.Seq.d/                      585   e-166
FC-303 (FC-303Q) /CSM/CG/CG-FC/FC-303Q.Seq.d/                         585   e-166
AHJ376 (AHJ376Q) /CSM/AH/AHJ3-D/AHJ376Q.Seq.d/                        585   e-166
AFB142 (AFB142Q) /CSM/AF/AFB1-B/AFB142Q.Seq.d/                        585   e-166
VSJ723 (VSJ723Q) /CSM/VS/VSJ7-A/VSJ723Q.Seq.d/                        575   e-163
SSH847 (SSH847Q) /CSM/SS/SSH8-B/SSH847Q.Seq.d/                        571   e-162
FC-BI12 (FC-BI12Q) /CSM/FC/FC-BI/FC-BI12Q.Seq.d/                      569   e-162
FC-IC1195 (FC-IC1195Q) /CSM/FC-IC/FC-IC1195Q.Seq.d/                   563   e-160
own update 2002.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BE587544|BE587544.1 WHE0660_A12_A24ZM Secale cereale root tip cDNA library Secalecereale cDNA clone WHE0660_A12_A24, mRNA sequence.   111   2e-25  2
AA547804|AA547804.1 MB3D6V1B03T3 Brugia malayi day 6 post-infection third stage larvae SAW96MLW-BmL3d6 Brugia malayi cDNA clone 3D6V1B03 5', mRNA sequence.    98   5e-23  2
BQ621908|BQ621908.1 fch1c.pk002.j9 Conidiobolus cornatus ARSEF 512 Conidiobolus coronatus cDNA, mRNA sequence.    62   7e-22  3
BP189345|BP189345.1 Dugesia japonica cDNA, clone: 06358_HH, expressed in the head.    56   2e-18  4
BP187489|BP187489.1 Dugesia japonica cDNA, clone: 00361_HN, expressed in the head.    56   2e-18  4
BM159911|BM159911.1 EST562434 PyBS Plasmodium yoelii yoelii cDNA clone PYCJK41 5' end, mRNA sequence.    92   4e-16  2
BM159173|BM159173.1 EST561696 PyBS Plasmodium yoelii yoelii cDNA clone PYCJA56 5' end, mRNA sequence.    92   5e-16  2
BM167496|BM167496.1 EST570019 PyBS Plasmodium yoelii yoelii cDNA clone PYCOL38 5' end, mRNA sequence.    92   5e-16  2
BM169378|BM169378.1 EST571901 PyBS Plasmodium yoelii yoelii cDNA clone PYCPP90 5' end, mRNA sequence.    92   6e-16  2
BM168397|BM168397.1 EST570920 PyBS Plasmodium yoelii yoelii cDNA clone PYCOZ85 5' end, mRNA sequence.    92   7e-16  2
dna update 2004. 2. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FB902303_1(FB902303|pid:none) Sequence 121576 from Patent WO2008...   173   2e-42
EU302535_1(EU302535|pid:none) Lineus viridis ribosomal protein r...   169   2e-41
FB902309_1(FB902309|pid:none) Sequence 121582 from Patent WO2008...   169   3e-41
EU195426_1(EU195426|pid:none) Mucor racemosus strain PTCC 5305 p...   169   4e-41
EU558359_1(EU558359|pid:none) Phoronis muelleri putative 60S rib...   168   6e-41
EF490854_1(EF490854|pid:none) Lepeophtheirus salmonis clone LS00...   167   1e-40
BT080413_1(BT080413|pid:none) Caligus clemensi clone ccle-evs-51...   167   1e-40
EU145725_1(EU145725|pid:none) Hyriopsis schlegelii putative tumo...   166   2e-40
AC147002_11(AC147002|pid:none) Medicago truncatula clone mth2-15...   166   2e-40
EF103442_1(EF103442|pid:none) Haliotis discus discus ribosomal p...   166   3e-40
protein update 2009. 7. 1
PSORT 

 psg: 0.52  gvh: 0.35  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for FC-IC0790 is cyt
5' end seq. ID FC-IC0790F
5' end seq. 
>FC-IC0790F.Seq
ACCAGATGCTAAAATCAGAATTTTCGATTTAGGTCGTAAGAAAGCATCAACTGATGAATT
CCCATTATGTGTTCATCTCATCTCCCTCGAAAAAGAACAACTTTCATCAGAAGCCATTGA
AGCTGGTCGTATTTCATGTAACAAATACATCTCAAAGACTGGTGGTAAAGATTCATTCCA
CATGAGAGTCAGAGTTCACCCATGGCACGTATTACGTATTAACAAGATGCTTTCATGCGC
TGGTGCAGATAGACTTCAAACCGGTATGAGAGGTGCCTTCGGTAAACCAATGGGTNNNNN
NNNNN
Length of 5' end seq. 305
3' end seq. ID FC-IC0790Z
3' end seq. 
>FC-IC0790Z.Seq
NNNNNNNNNNACCAGATGCTAAAATCAGAATTTTCGATTTAGGTCGTAAGAAAGCATCAA
CTGATGAATTCCCATTATGTGTTCATCTCATCTCCCTCGAAAAAGAACAACTTTCATCAG
AAGCCATTGAAGCTGGTCGTATTTCATGTAACAAATACATCTCAAAGACTGGTGGTAAAG
ATTCATTCCACATGAGAGTCAGAGTTCACCCATGGCACGTATTACGTATTAACAAGATGC
TTTCATGCGCTGGTGCAGATAGACTTCAAACCGGTATGAGAGGTGCCTTCGGTAAACCAA
TGGGT
Length of 3' end seq. 305
Connected seq. ID FC-IC0790P
Connected seq. 
>FC-IC0790P.Seq
ACCAGATGCTAAAATCAGAATTTTCGATTTAGGTCGTAAGAAAGCATCAACTGATGAATT
CCCATTATGTGTTCATCTCATCTCCCTCGAAAAAGAACAACTTTCATCAGAAGCCATTGA
AGCTGGTCGTATTTCATGTAACAAATACATCTCAAAGACTGGTGGTAAAGATTCATTCCA
CATGAGAGTCAGAGTTCACCCATGGCACGTATTACGTATTAACAAGATGCTTTCATGCGC
TGGTGCAGATAGACTTCAAACCGGTATGAGAGGTGCCTTCGGTAAACCAATGGGT-----
-----ACCAGATGCTAAAATCAGAATTTTCGATTTAGGTCGTAAGAAAGCATCAACTGAT
GAATTCCCATTATGTGTTCATCTCATCTCCCTCGAAAAAGAACAACTTTCATCAGAAGCC
ATTGAAGCTGGTCGTATTTCATGTAACAAATACATCTCAAAGACTGGTGGTAAAGATTCA
TTCCACATGAGAGTCAGAGTTCACCCATGGCACGTATTACGTATTAACAAGATGCTTTCA
TGCGCTGGTGCAGATAGACTTCAAACCGGTATGAGAGGTGCCTTCGGTAAACCAATGGGT
Length of connected seq. 590
Full length Seq ID FC-IC0790E
Full length Seq. 
>FC-IC0790E.Seq
ACCAGATGCTAAAATCAGAATTTTCGATTTAGGTCGTAAGAAAGCATCAACTGATGAATT
CCCATTATGTGTTCATCTCATCTCCCTCGAAAAAGAACAACTTTCATCAGAAGCCATTGA
AGCTGGTCGTATTTCATGTAACAAATACATCTCAAAGACTGGTGGTAAAGATTCATTCCA
CATGAGAGTCAGAGTTCACCCATGGCACGTATTACGTATTAACAAGATGCTTTCATGCGC
TGGTGCAGATAGACTTCAAACCGGTATGAGAGGTGCCTTCGGTAAACCAATGGGT
Length of full length seq. 295