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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0775
Library FC-IC
(Link to library)
Clone ID FC-IC0775
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16271-1
Original site URL
Representative seq. ID FC-IC0775P
(Link to Original site)
Representative DNA sequence 
>FC-IC0775 (FC-IC0775Q) /CSM/FC-IC/FC-IC0775Q.Seq.d/
ACTAAATTAAGTGGTTTAGGAGAAACTTGTGGCACCCCATTCACAGAATGTGCAGAACCA
TTCGCATGTCGTTCTGTTACAACCACCAAAGGTAATTTACAAACTTGTGCTATGCCAGAT
TATTTAANNTTTGGTGAAANNTGTAATTCANACTACCAATGTGGTAATGGTTTAACAAAA
TAATGAANATATTTTNTNATTGAAACCACACGTTATTTGTTCTAACNATGGGGAXXXXXX
XXXXTANCAATGTGGTAATGGTTCAACATGTNATNAANAGATTTGCTCATTNNAACCACA
CGTTATTTGTTCTAACGATGGTCAATGTCCATTTGGTCAATTCTGTAATGGT
sequence update 2001.11. 5
Translated Amino Acid sequence 
ln*vv*eklvaphsqnvqnhshvvllqppkviyklvlcqii*xlvkxvixttnvvmv*QN
NEXIXXLKPHVICSNXG---

---XQCGNGSTCXXXICSXXPHVICSNDGQCPFGQFCNG
Translated Amino Acid sequence (All Frames) 
Frame A:
tklsglgetcgtpftecaepfacrsvtttkgnlqtcampdylxfgexcnsxyqcgngltk
**xyfxiettrylf*xwg---

---XQCGNGSTCXXXICSXXPHVICSNDGQCPFGQFCNG

Frame B:
ln*vv*eklvaphsqnvqnhshvvllqppkviyklvlcqii*xlvkxvixttnvvmv*QN
NEXIXXLKPHVICSNXG---

---xnvvmvqhvxxrfahxnhtlfvltmvnvhlvnsvm

Frame C:
*ikwfrrnlwhpihrmcrtirmsfcynhqr*ftnlcyarlfxxw*xx*fxlpmw*wfnki
mxifxx*nhtlfvltmg---

---xmw*wfnmxxxdllixttrylf*rwsmsiwsil*w
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0775 (FC-IC0775Q) /CSM/FC-IC/FC-IC0775Q.Seq.d/                   549   e-156
FC-IC1758 (FC-IC1758Q) /CSM/FC-IC/FC-IC1758Q.Seq.d/                   349   2e-95
FC-IC1685 (FC-IC1685Q) /CSM/FC-IC/FC-IC1685Q.Seq.d/                   349   2e-95
FC-IC1600 (FC-IC1600Q) /CSM/FC-IC/FC-IC1600Q.Seq.d/                   349   2e-95
FC-IC1555 (FC-IC1555Q) /CSM/FC-IC/FC-IC1555Q.Seq.d/                   349   2e-95
FC-IC1502 (FC-IC1502Q) /CSM/FC-IC/FC-IC1502Q.Seq.d/                   349   2e-95
FC-IC1367 (FC-IC1367Q) /CSM/FC-IC/FC-IC1367Q.Seq.d/                   349   2e-95
FC-IC1366 (FC-IC1366Q) /CSM/FC-IC/FC-IC1366Q.Seq.d/                   349   2e-95
FC-IC1304 (FC-IC1304Q) /CSM/FC-IC/FC-IC1304Q.Seq.d/                   349   2e-95
FC-IC1238 (FC-IC1238Q) /CSM/FC-IC/FC-IC1238Q.Seq.d/                   349   2e-95
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB079606|AB079606.1 Dictyostelium discoideum Dd-gdcA gene, complete cds.   313   5e-94  2
AB079253|AB079253.1 Dictyostelium discoideum Dd-gdcA mRNA, complete cds.   313   5e-94  2
AZ668055|AZ668055.1 ENTIR24TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46   0.31   1
BH157461|BH157461.1 ENTTN57TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    46   0.31   1
AB022216|AB022216.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGD8.    42   1.3    3
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    40   4.2    3
AL157877|AL157877.11 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-2P5.    40   19     1
BQ476277|BQ476277.1 curculio2f07.b Curculio glandium cDNA Curculio glandium cDNA clone curculio2f07 5', mRNA sequence.    40   19     1
CF175519|CF175519.1 799477 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence.    40   19     1
BQ476738|BQ476738.1 curculio5h10.g Curculio glandium cDNA Curculio glandium cDNA clone curculio5h10 3', mRNA sequence.    40   19     1
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB079253_1(AB079253|pid:none) Dictyostelium discoideum Dd-gdcA m...   125   4e-43
AB027502_1(AB027502|pid:none) Polysphondylium pallidum gene for ...    33   3.8
protein update 2009. 1. 4
PSORT 

 psg: 0.80  gvh: 0.51  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for FC-IC0775 is cyt
5' end seq. ID FC-IC0775F
5' end seq. 
>FC-IC0775F.Seq
ACTAAATTAAGTGGTTTAGGAGAAACTTGTGGCACCCCATTCACAGAATGTGCAGAACCA
TTCGCATGTCGTTCTGTTACAACCACCAAAGGTAATTTACAAACTTGTGCTATGCCAGAT
TATTTAANNTTTGGTGAAANNTGTAATTCANACTACCAATGTGGTAATGGTTTAACAAAA
TAATGAANATATTTTNTNATTGAAACCACACGTTATTTGTTCTAACNATGGGGANNNNNN
NNNN
Length of 5' end seq. 244
3' end seq. ID FC-IC0775Z
3' end seq. 
>FC-IC0775Z.Seq
NNNNNNNNNNTANCAATGTGGTAATGGTTCAACATGTNATNAANAGATTTGCTCATTNNA
ACCACACGTTATTTGTTCTAACGATGGTCAATGTCCATTTGGTCAATTCTGTAATGGT
Length of 3' end seq. 118
Connected seq. ID FC-IC0775P
Connected seq. 
>FC-IC0775P.Seq
ACTAAATTAAGTGGTTTAGGAGAAACTTGTGGCACCCCATTCACAGAATGTGCAGAACCA
TTCGCATGTCGTTCTGTTACAACCACCAAAGGTAATTTACAAACTTGTGCTATGCCAGAT
TATTTAANNTTTGGTGAAANNTGTAATTCANACTACCAATGTGGTAATGGTTTAACAAAA
TAATGAANATATTTTNTNATTGAAACCACACGTTATTTGTTCTAACNATGGGGA------
----TANCAATGTGGTAATGGTTCAACATGTNATNAANAGATTTGCTCATTNNAACCACA
CGTTATTTGTTCTAACGATGGTCAATGTCCATTTGGTCAATTCTGTAATGGT
Length of connected seq. 342
Full length Seq ID -
Full length Seq. -
Length of full length seq. -