FC-IC0758
Library FC-IC
(Link to library)
Clone ID FC-IC0758
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U07877-1
Original site URL
Representative seq. ID FC-IC0758P
(Link to Original site)
Representative DNA sequence
>FC-IC0758 (FC-IC0758Q) /CSM/FC-IC/FC-IC0758Q.Seq.d/
ACAATTAAAGATGAATTTAAAAAAGCAGCCGTTGTAATTCCAGATAATGGTGCANAAGAA
ATTGTTGATCCATGGGTTCGTTTCATTGGAAATGAAGGAGATCCAAACAATGTTAGAACC
TATACCTTTATGGCATATAATTTAACCAATCCAATTGAAACCATGCAAGGTCATTTACCA
AAATATCAAGAAGTTGGTCCATACAGNTACAATTACATCTATGAACGTATCAATGCAAAC
CTNTATGAAGATGATGAAAAATTAAGTTTCAAACTTTGGAAACGTTATTTCCCAATTGTT
GCTGATGGTTATAGAGATCCAACCAAAGATACTATCTATCATTTCAATNTAGTATATGGN
GCTGCCGTTAAACAAGCAGGTANNNAAGTTGCACTTTNANTAACTTTAACAGNNGCTGCA
ANGGGTAAAATTATCACTGGTCTCACTGACCCAAGCTTTAAAGCCAAAGCTGGTTTCGCT
GCTGCACCAACANAAACTGCTGGANCTTTTTCAAATCTTTTAACTGCAGCTGGNCATGAC
CCAANTACTGCATGNGGACTTTGNNAAACTAGGTXXXXXXXXXXACTTTGTTTTATGTTA
TTTCCCAATCGTCGATGGGTGCTATAGAGATCCACTCCATCATAAATATCTATCATTTCA
ACATTAGTATATGGTATGGCCGTTTAACAAGCAGGTAGNGAAGTGTGCTCTTTCAGTAAC
TTTAACAGCAGCTGCAATGGGTATAATTATCTCTGGTCTCAATGGCCCAAGCTTTAAAGT
CAAAGCTGGTTCCGCTGCCGCCGCGTACANTAACTGCTGGAGCTTTTACAAATACTTTTT
GTCTGCAGCTGGNAATGACCCAANTACAGCATGTGGCCTTTGCCTGGATAGG
sequence update 2001.11.23
Translated Amino Acid sequence
TIKDEFKKAAVVIPDNGAXEIVDPWVRFIGNEGDPNNVRTYTFMAYNLTNPIETMQGHLP
KYQEVGPYXYNYIYERINANLYEDDEKLSFKLWKRYFPIVADGYRDPTKDTIYHFNXVYG
AAVKQAGXXVALXXTLTXAAXGKIITGLTDPSFKAKAGFAAAPTXTAGXFSNLLTAAGHD
PXTAXGLXXTR---

---TLFYVISQSSMGAIEIHSIINIYHFNISIWYGRLTSR*xsvlfq*l*qqlqwv*lsl
vsmaqalksklvplpprtxtagaftntfclqlxmtqxqhvafawi


Translated Amino Acid sequence (All Frames)
Frame A:
TIKDEFKKAAVVIPDNGAXEIVDPWVRFIGNEGDPNNVRTYTFMAYNLTNPIETMQGHLP
KYQEVGPYXYNYIYERINANLYEDDEKLSFKLWKRYFPIVADGYRDPTKDTIYHFNXVYG
AAVKQAGXXVALXXTLTXAAXGKIITGLTDPSFKAKAGFAAAPTXTAGXFSNLLTAAGHD
PXTAXGLXXTR---

---TLFYVISQSSMGAIEIHSIINIYHFNISIWYGRLTSR*xsvlfq*l*qqlqwv*lsl
vsmaqalksklvplpprtxtagaftntfclqlxmtqxqhvafawi

Frame B:
qlkmnlkkqpl*fqimvxkkllihgfvslemkeiqtmlepiplwhii*piqlkpckviyq
nikklvhtxtitsmnvsmqtxmkmmkn*vsnfgnvisqlllmvieiqpkilsiisx*ymx
lplnkqvxklhfx*l*qxlqxvklslvsltqalkpklvsllhqxkllxlfqif*lqlxmt
qxlhxdfxklg---

---lcfmlfpnrrwvl*rstps*isiistlvygmav*qagxevcsfsnfnsscngynylw
sqwpkl*sqswfrcrrvx*llellqilfvcswx*pxysmwplpg*

Frame C:
n*r*i*kssrcnsr*wcxrnc*smgsfhwk*rrskqc*nlylygi*fnqsn*nharsftk
isrswsiqxqlhl*tyqckpx*r**kikfqtletlfpncc*wl*rsnqryylsfqxsiwx
cr*tsrxxsctxxnfnxxcxg*nyhwsh*pkl*sqswfrcctnxncwxffksfncswx*p
xycmxtlxn*---

---fvlcyfpivdgcyrdplhhkylsfqh*ymvwpfnkqvxkcalsvtltaaamgiiisg
lngpsfkvkagsaaaayxncwsfykyflsaagndpxtacglcldr

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC0758 (FC-IC0758Q) /CSM/FC-IC/FC-IC0758Q.Seq.d/ 1566 0.0
FC-IC1182 (FC-IC1182Q) /CSM/FC-IC/FC-IC1182Q.Seq.d/ 959 0.0
FC-IC1150 (FC-IC1150Q) /CSM/FC-IC/FC-IC1150Q.Seq.d/ 959 0.0
FC-IC0840 (FC-IC0840Q) /CSM/FC-IC/FC-IC0840Q.Seq.d/ 959 0.0
FC-IC0618 (FC-IC0618Q) /CSM/FC-IC/FC-IC0618Q.Seq.d/ 955 0.0
FC-IC1504 (FC-IC1504Q) /CSM/FC-IC/FC-IC1504Q.Seq.d/ 954 0.0
FC-IC0304 (FC-IC0304Q) /CSM/FC-IC/FC-IC0304Q.Seq.d/ 952 0.0
FC-IC0275 (FC-IC0275Q) /CSM/FC-IC/FC-IC0275Q.Seq.d/ 952 0.0
FC-IC0549 (FC-IC0549Q) /CSM/FC-IC/FC-IC0549Q.Seq.d/ 906 0.0
FC-IC0104 (FC-IC0104Q) /CSM/FC-IC/FC-IC0104Q.Seq.d/ 381 e-104

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF238324|AF238324.1 Dictyostelium discoideum lysosomal integral membrane protein II (lmpB) mRNA, complete cds. 959 0.0 4
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3. 34 0.47 7
AE010463|AE010463.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 5 of 197 of the complete genome. 36 0.62 3
AC142562|AC142562.2 Bos taurus clone RP42-371H23, WORKING DRAFT SEQUENCE, 3 unordered pieces. 46 0.82 1
AC100177|AC100177.3 Mus musculus clone RP23-51A7, WORKING DRAFT SEQUENCE, 15 unordered pieces. 46 0.82 1
AC142563|AC142563.2 Bos taurus clone RP42-462M18, WORKING DRAFT SEQUENCE, 2 ordered pieces. 46 0.82 1
AC099627|AC099627.2 Mus musculus clone RP24-69E5, WORKING DRAFT SEQUENCE, 7 unordered pieces. 46 0.82 1
BY642435|BY642435.1 Mus musculus visual cortex cDNA, RIKEN full-length enriched library, clone:K430351A15, 3' end partial sequence. 46 0.82 1
AB107692|AB107692.1 Nicotiana tabacum AGP4 mRNA for AG-motif binding protein-4, complete cds. 34 2.0 2
BX545918|BX545918.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-22F11. 38 2.1 5
dna update 2003.12.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9BKJ9) RecName: Full=Lysosome membrane protein 2-B; AltName: F... 286 5e-76
(P27615) RecName: Full=Lysosome membrane protein 2; AltName: Ful... 48 4e-04
AY496973_1(AY496973|pid:none) Schistosoma japonicum CD36-related... 46 0.002
AY810529_1(AY810529|pid:none) Schistosoma japonicum SJCHGC01875 ... 45 0.003
AY814722_1(AY814722|pid:none) Schistosoma japonicum SJCHGC06304 ... 45 0.003
DQ249305_1(DQ249305|pid:none) Schistosoma mansoni CD36-like clas... 44 0.009
AE014296_409(AE014296|pid:none) Drosophila melanogaster chromoso... 44 0.009
(Q55FQ9) RecName: Full=Lysosome membrane protein 2-C; AltName: F... 43 0.012
AF238325_1(AF238325|pid:none) Dictyostelium discoideum lysosomal... 43 0.012
(Q14108) RecName: Full=Lysosome membrane protein 2; AltName: Ful... 42 0.021
protein update 2009. 5.21
PSORT

psg: 0.73 gvh: 0.34 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for FC-IC0758 is cyt

5' end seq. ID FC-IC0758F
5' end seq.
>FC-IC0758F.Seq
ACAATTAAAGATGAATTTAAAAAAGCAGCCGTTGTAATTCCAGATAATGGTGCANAAGAA
ATTGTTGATCCATGGGTTCGTTTCATTGGAAATGAAGGAGATCCAAACAATGTTAGAACC
TATACCTTTATGGCATATAATTTAACCAATCCAATTGAAACCATGCAAGGTCATTTACCA
AAATATCAAGAAGTTGGTCCATACAGNTACAATTACATCTATGAACGTATCAATGCAAAC
CTNTATGAAGATGATGAAAAATTAAGTTTCAAACTTTGGAAACGTTATTTCCCAATTGTT
GCTGATGGTTATAGAGATCCAACCAAAGATACTATCTATCATTTCAATNTAGTATATGGN
GCTGCCGTTAAACAAGCAGGTANNNAAGTTGCACTTTNANTAACTTTAACAGNNGCTGCA
ANGGGTAAAATTATCACTGGTCTCACTGACCCAAGCTTTAAAGCCAAAGCTGGTTTCGCT
GCTGCACCAACANAAACTGCTGGANCTTTTTCAAATCTTTTAACTGCAGCTGGNCATGAC
CCAANTACTGCATGNGGACTTTGNNAAACTAGGTNNNNNNNNNN
Length of 5' end seq. 584
3' end seq. ID FC-IC0758Z
3' end seq.
>FC-IC0758Z.Seq
NNNNNNNNNNACTTTGTTTTATGTTATTTCCCAATCGTCGATGGGTGCTATAGAGATCCA
CTCCATCATAAATATCTATCATTTCAACATTAGTATATGGTATGGCCGTTTAACAAGCAG
GTAGNGAAGTGTGCTCTTTCAGTAACTTTAACAGCAGCTGCAATGGGTATAATTATCTCT
GGTCTCAATGGCCCAAGCTTTAAAGTCAAAGCTGGTTCCGCTGCCGCCGCGTACANTAAC
TGCTGGAGCTTTTACAAATACTTTTTGTCTGCAGCTGGNAATGACCCAANTACAGCATGT
GGCCTTTGCCTGGATAGG
Length of 3' end seq. 318
Connected seq. ID FC-IC0758P
Connected seq.
>FC-IC0758P.Seq
ACAATTAAAGATGAATTTAAAAAAGCAGCCGTTGTAATTCCAGATAATGGTGCANAAGAA
ATTGTTGATCCATGGGTTCGTTTCATTGGAAATGAAGGAGATCCAAACAATGTTAGAACC
TATACCTTTATGGCATATAATTTAACCAATCCAATTGAAACCATGCAAGGTCATTTACCA
AAATATCAAGAAGTTGGTCCATACAGNTACAATTACATCTATGAACGTATCAATGCAAAC
CTNTATGAAGATGATGAAAAATTAAGTTTCAAACTTTGGAAACGTTATTTCCCAATTGTT
GCTGATGGTTATAGAGATCCAACCAAAGATACTATCTATCATTTCAATNTAGTATATGGN
GCTGCCGTTAAACAAGCAGGTANNNAAGTTGCACTTTNANTAACTTTAACAGNNGCTGCA
ANGGGTAAAATTATCACTGGTCTCACTGACCCAAGCTTTAAAGCCAAAGCTGGTTTCGCT
GCTGCACCAACANAAACTGCTGGANCTTTTTCAAATCTTTTAACTGCAGCTGGNCATGAC
CCAANTACTGCATGNGGACTTTGNNAAACTAGGT----------ACTTTGTTTTATGTTA
TTTCCCAATCGTCGATGGGTGCTATAGAGATCCACTCCATCATAAATATCTATCATTTCA
ACATTAGTATATGGTATGGCCGTTTAACAAGCAGGTAGNGAAGTGTGCTCTTTCAGTAAC
TTTAACAGCAGCTGCAATGGGTATAATTATCTCTGGTCTCAATGGCCCAAGCTTTAAAGT
CAAAGCTGGTTCCGCTGCCGCCGCGTACANTAACTGCTGGAGCTTTTACAAATACTTTTT
GTCTGCAGCTGGNAATGACCCAANTACAGCATGTGGCCTTTGCCTGGATAGG
Length of connected seq. 882
Full length Seq ID -
Full length Seq. -
Length of full length seq. -