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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0750
Library FC-IC
(Link to library)
Clone ID FC-IC0750
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16527-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>FC-IC0750 (FC-IC0750Q) /CSM/FC-IC/FC-IC0750Q.Seq.d/
ACCATATTTAATAAGGTAACGAGATTCAAGTGCTGNACTACTANCAATATGCCCAACATG
ATCCGCATCAGTCCTTGATCTNTNATTGGNGNTTTGGTATGAAGTCCAAACTACCCGAAA
NAAAANATGTTGGGGCTGGTGTAXXXXXXXXXX
sequence update 2001.11. 5
Translated Amino Acid sequence 
hi**GNEIQVLXYXQYAQHDPHQSLIXXWXFGMKSKLPEXKXVGAG---
Translated Amino Acid sequence (All Frames) 
Frame A:
tifnkvtrfkcxttxnmpnmirisp*sxigxlv*spnypkxxmlglv---


Frame B:
pylir*rdssaxllxicpt*sasvldlxlxxwyevqttrxkxcwgwc---


Frame C:
hi**GNEIQVLXYXQYAQHDPHQSLIXXWXFGMKSKLPEXKXVGAG---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0750 (FC-IC0750Q) /CSM/FC-IC/FC-IC0750Q.Seq.d/                   236   7e-62
FC-IC1760 (FC-IC1760Q) /CSM/FC-IC/FC-IC1760Q.Seq.d/                   133   8e-31
FC-IC1748 (FC-IC1748Q) /CSM/FC-IC/FC-IC1748Q.Seq.d/                   133   8e-31
FC-IC1665 (FC-IC1665Q) /CSM/FC-IC/FC-IC1665Q.Seq.d/                   133   8e-31
FC-IC1648 (FC-IC1648Q) /CSM/FC-IC/FC-IC1648Q.Seq.d/                   133   8e-31
FC-IC1642 (FC-IC1642Q) /CSM/FC-IC/FC-IC1642Q.Seq.d/                   133   8e-31
FC-IC1631 (FC-IC1631Q) /CSM/FC-IC/FC-IC1631Q.Seq.d/                   133   8e-31
FC-IC1622 (FC-IC1622Q) /CSM/FC-IC/FC-IC1622Q.Seq.d/                   133   8e-31
FC-IC1583 (FC-IC1583Q) /CSM/FC-IC/FC-IC1583Q.Seq.d/                   133   8e-31
FC-IC1527 (FC-IC1527Q) /CSM/FC-IC/FC-IC1527Q.Seq.d/                   133   8e-31
own update 2004. 5.10
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB088483|AB088483.1 Dictyostelium discoideum gene for gamete and mating-type specific protein A, complete cds.    82   4e-27  5
BQ099284|BQ099284.1 ph28f10.y2 Ostertagia ostertagi L3 pAMP1 v1 Ostertagia ostertagi cDNA 5' similar to TR:O45734 O45734 T03E6.7 PROTEIN. [1] ;, mRNA sequence.    40   7.8    1
dna update 2002. 9. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB088483_1(AB088483|pid:none) Dictyostelium discoideum gmsA gene...    34   1.8
protein update 2009. 1. 4
PSORT 

 psg: 0.75  gvh: 0.31  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for FC-IC0750 is nuc
5' end seq. ID FC-IC0750F
5' end seq. 
>FC-IC0750F.Seq
ACCATATTTAATAAGGTAACGAGATTCAAGTGCTGNACTACTANCAATATGCCCAACATG
ATCCGCATCAGTCCTTGATCTNTNATTGGNGNTTTGGTATGAAGTCCAAACTACCCGAAA
NAAAANATGTTGGGGCTGGTGTANNNNNNNNNN
Length of 5' end seq. 153
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -