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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0701
Library FC-IC
(Link to library)
Clone ID FC-IC0701
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15388-1
Original site URL
Representative seq. ID FC-IC0701P
(Link to Original site)
Representative DNA sequence 
>FC-IC0701 (FC-IC0701Q) /CSM/FC-IC/FC-IC0701Q.Seq.d/
ACTTACGTTTCGTTGTCGTTTTACTGTATTTGCATTACTTTTTGTTCGTCCTCTTACAGG
GTATCCTTGTCTTACTCTAATATATCTATAAACATTTTCTATTCGTCTTATTTTTGCTAA
TGCTTCTTCTTTTAATCCATAGTTATGTGAATATAAGCCTTTAAATCTTTGCAGTATATC
TACTATTTGCTTTTCCTCACTTTGTATTAATTTGTTTCCTTTTATACTTGCGACATTTCC
ACTTAACATTATTACTTTTTGAGCAATATGAAAATTCACTCCTTTAATTTTTTTCTTTAA
TTCTCCTATTATTTGCTTCTCATTATTTAATTCAATTTTTCCAATTACTATTCCCATCTT
ATCTCACTTTTNCTTTTTTTAATGTTAATTNTTTTATNGATNCCTANCCGTTACCACNCT
AAGCCGNATTANCACCNCTNGCCGAATTCCATNACACTGNCGGCCGGXXXXXXXXXXACT
NACGTTTCGTTGTCGTTTTACTGTATTTGCATTACTTTTTGTTCGTCCTCTTACAGGGTA
TCCTTGTCTTACTCTAATATATCTATAAACATTTTCTATTCGTCTTATTTTTGCTAATGC
TTCTTCTTTTAATCCATAGTTATGTGAATATAAGCCTTTAAATCTTTGCAGTATATCTAC
TATTTGCTTTTCCTCACTTTGTATTAATTTGTTTCCTTTTATACTTGCGACATTTCCACT
TCCANTATANCNTNTTGAGCAAGATGAAAATTCACTCCAAAANTTTNCTCTTNAATTCTC
NGATTATCTGNTTCTCATTNNTTAANNCNATTTNGCCAATTACTNTTCCCATCTNATCTC
ACTTTTCCATTTATGTAATTTAATTTNTTCANTGATACNTAATATTCCAGT
sequence update 2001.11. 5
Translated Amino Acid sequence 
tyvslsfycicitfcsssyrvslsysnisinifyssyfc*cfff*sivm*i*afkslqyi
yyllfltly*fvsfytcdist*hyyflsnmkihsfnffl*fsyylllii*FNFSNYYSHL
ISLXLFLMLIXLXXPXRYHXKPXXHXXPNSXTLXA---

---TXVSLSFYCICITFCSSSYRVSLSYSNISINIFYSSYFC*cfff*sivm*i*afksl
qyiyyllfltly*fvsfytcdistsxixx*ar*kftpkxxsxilxlsxshxlxxfxqllf
psxltfpfm*fnxfxdt*yss
Translated Amino Acid sequence (All Frames) 
Frame A:
tyvslsfycicitfcsssyrvslsysnisinifyssyfc*cfff*sivm*i*afkslqyi
yyllfltly*fvsfytcdist*hyyflsnmkihsfnffl*fsyylllii*FNFSNYYSHL
ISLXLFLMLIXLXXPXRYHXKPXXHXXPNSXTLXA---

---TXVSLSFYCICITFCSSSYRVSLSYSNISINIFYSSYFC*cfff*sivm*i*afksl
qyiyyllfltly*fvsfytcdistsxixx*ar*kftpkxxsxilxlsxshxlxxfxqllf
psxltfpfm*fnxfxdt*yss

Frame B:
ltfrcrftvfallfvrpltgypcltliyl*tfsirlifanassfnp*lceykplnlcsis
ticfsslcinlfpfilatfplniitf*ai*kftplifffnspiicfslfnsifpitipil
shfxff*c*xfyxxlxvttlsrixtxxripxhxrp---

---ltfrcrftvfallfvrpltgypcltliyl*tfsirlifanassfnp*lceykplnlc
sisticfsslcinlfpfilatfplpxxxxeqdenslqxfxlxfsdylxlix*xxxanyxs
hlislfhlcnlixsxixnip

Frame C:
lrfvvvllylhyflfvllqgilvll*yiykhflfvlfllmllllihsyvnisl*ifavyl
lfafphfvlicfllylrhfhltlllfeqyensll*ffslilllfashyliqffqllfpsy
ltfxffnvnxfxdxxplpx*axlxplaefhxtxgr---

---xrfvvvllylhyflfvllqgilvll*yiykhflfvlfllmllllihsyvnisl*ifa
vyllfafphfvlicfllylrhfhfxyxxlskmkihskxxlxnsxiixfsxxxxixpitxp
ixshfsiyvi*fxx*yxifq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0701 (FC-IC0701Q) /CSM/FC-IC/FC-IC0701Q.Seq.d/                  1392   0.0
VSD266 (VSD266Q) /CSM/VS/VSD2-C/VSD266Q.Seq.d/                        686   0.0
VSB454 (VSB454Q) /CSM/VS/VSB4-C/VSB454Q.Seq.d/                        686   0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/               686   0.0
FC-IC1621 (FC-IC1621Q) /CSM/FC-IC/FC-IC1621Q.Seq.d/                   686   0.0
VSG771 (VSG771Q) /CSM/VS/VSG7-C/VSG771Q.Seq.d/                        151   2e-35
SLH593 (SLH593Q) /CSM/SL/SLH5-D/SLH593Q.Seq.d/                        119   8e-26
FCL-AC07 (FCL-AC07Q) /CSM/FCL/FCL-AC/FCL-AC07Q.Seq.d/                 109   7e-23
VFE807 (VFE807Q) /CSM/VF/VFE8-A/VFE807Q.Seq.d/                         38   0.22
SSM580 (SSM580Q) /CSM/SS/SSM5-D/SSM580Q.Seq.d/                         38   0.22
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D63523|D63523.1 Dictyostelium discoideum mitochondrial genes for ribosomal proteins, complete and partial cds.   561   0.0    3
AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence.   561   0.0    6
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2.    32   0.001  17
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    30   0.004  16
AC084790|AC084790.2 Homo sapiens chromosome 9 clone RP11-373O10, *** SEQUENCING IN PROGRESS ***, 26 unordered pieces.    32   0.072  11
AL646103|AL646103.3 Human DNA sequence from clone RP11-165L6 on chromosome 13.    46   0.25   3
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    36   0.31   11
AE014840|AE014840.1 Plasmodium falciparum 3D7 chromosome 11 section 5 of 8 of the complete sequence.    34   0.62   12
AL391377|AL391377.16 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-232C1.    46   0.83   1
AC012911|AC012911.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    46   0.83   1
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O21038) RecName: Full=Ribosomal protein S13, mitochondrial;  &A...   232   1e-59
EU275726_40(EU275726|pid:none) Polysphondylium pallidum strain P...    83   1e-14
AY700145_22(AY700145|pid:none) Polysphondylium pallidum mitochon...    79   2e-13
(Q6F1W9) RecName: Full=30S ribosomal protein S13;  &AE017263_148...    46   0.001
(A5D5E5) RecName: Full=30S ribosomal protein S13;  &AP009389_345...    45   0.004
(Q04BZ1) RecName: Full=30S ribosomal protein S13;  &(Q1GBJ4) Rec...    44   0.007
(Q2SRH7) RecName: Full=30S ribosomal protein S13;  &CP000123_636...    44   0.009
(Q035A7) RecName: Full=30S ribosomal protein S13;  &CP000423_234...    44   0.009
(Q6MSP7) RecName: Full=30S ribosomal protein S13;  &BX293980_688...    44   0.009
CP000922_130(CP000922|pid:none) Anoxybacillus flavithermus WK1, ...    43   0.012
protein update 2009. 5.21
PSORT 

 psg: 0.98  gvh: 0.76  alm: 0.35  top: 0.63  tms: 0.00  mit: 0.65  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: mitochondrial
	 16.0 %: extracellular, including cell wall
	  8.0 %: cytoplasmic
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for FC-IC0701 is mit
5' end seq. ID FC-IC0701F
5' end seq. 
>FC-IC0701F.Seq
ACTTACGTTTCGTTGTCGTTTTACTGTATTTGCATTACTTTTTGTTCGTCCTCTTACAGG
GTATCCTTGTCTTACTCTAATATATCTATAAACATTTTCTATTCGTCTTATTTTTGCTAA
TGCTTCTTCTTTTAATCCATAGTTATGTGAATATAAGCCTTTAAATCTTTGCAGTATATC
TACTATTTGCTTTTCCTCACTTTGTATTAATTTGTTTCCTTTTATACTTGCGACATTTCC
ACTTAACATTATTACTTTTTGAGCAATATGAAAATTCACTCCTTTAATTTTTTTCTTTAA
TTCTCCTATTATTTGCTTCTCATTATTTAATTCAATTTTTCCAATTACTATTCCCATCTT
ATCTCACTTTTNCTTTTTTTAATGTTAATTNTTTTATNGATNCCTANCCGTTACCACNCT
AAGCCGNATTANCACCNCTNGCCGAATTCCATNACACTGNCGGCCGGNNNNNNNNNN
Length of 5' end seq. 477
3' end seq. ID FC-IC0701Z
3' end seq. 
>FC-IC0701Z.Seq
NNNNNNNNNNACTNACGTTTCGTTGTCGTTTTACTGTATTTGCATTACTTTTTGTTCGTC
CTCTTACAGGGTATCCTTGTCTTACTCTAATATATCTATAAACATTTTCTATTCGTCTTA
TTTTTGCTAATGCTTCTTCTTTTAATCCATAGTTATGTGAATATAAGCCTTTAAATCTTT
GCAGTATATCTACTATTTGCTTTTCCTCACTTTGTATTAATTTGTTTCCTTTTATACTTG
CGACATTTCCACTTCCANTATANCNTNTTGAGCAAGATGAAAATTCACTCCAAAANTTTN
CTCTTNAATTCTCNGATTATCTGNTTCTCATTNNTTAANNCNATTTNGCCAATTACTNTT
CCCATCTNATCTCACTTTTCCATTTATGTAATTTAATTTNTTCANTGATACNTAATATTC
CAGT
Length of 3' end seq. 424
Connected seq. ID FC-IC0701P
Connected seq. 
>FC-IC0701P.Seq
ACTTACGTTTCGTTGTCGTTTTACTGTATTTGCATTACTTTTTGTTCGTCCTCTTACAGG
GTATCCTTGTCTTACTCTAATATATCTATAAACATTTTCTATTCGTCTTATTTTTGCTAA
TGCTTCTTCTTTTAATCCATAGTTATGTGAATATAAGCCTTTAAATCTTTGCAGTATATC
TACTATTTGCTTTTCCTCACTTTGTATTAATTTGTTTCCTTTTATACTTGCGACATTTCC
ACTTAACATTATTACTTTTTGAGCAATATGAAAATTCACTCCTTTAATTTTTTTCTTTAA
TTCTCCTATTATTTGCTTCTCATTATTTAATTCAATTTTTCCAATTACTATTCCCATCTT
ATCTCACTTTTNCTTTTTTTAATGTTAATTNTTTTATNGATNCCTANCCGTTACCACNCT
AAGCCGNATTANCACCNCTNGCCGAATTCCATNACACTGNCGGCCGG----------ACT
NACGTTTCGTTGTCGTTTTACTGTATTTGCATTACTTTTTGTTCGTCCTCTTACAGGGTA
TCCTTGTCTTACTCTAATATATCTATAAACATTTTCTATTCGTCTTATTTTTGCTAATGC
TTCTTCTTTTAATCCATAGTTATGTGAATATAAGCCTTTAAATCTTTGCAGTATATCTAC
TATTTGCTTTTCCTCACTTTGTATTAATTTGTTTCCTTTTATACTTGCGACATTTCCACT
TCCANTATANCNTNTTGAGCAAGATGAAAATTCACTCCAAAANTTTNCTCTTNAATTCTC
NGATTATCTGNTTCTCATTNNTTAANNCNATTTNGCCAATTACTNTTCCCATCTNATCTC
ACTTTTCCATTTATGTAATTTAATTTNTTCANTGATACNTAATATTCCAGT
Length of connected seq. 881
Full length Seq ID -
Full length Seq. -
Length of full length seq. -