FC-IC0655
Library FC-IC
(Link to library)
Clone ID FC-IC0655
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16583-1
Original site URL
Representative seq. ID FC-IC0655E
(Link to Original site)
Representative DNA sequence
>FC-IC0655 (FC-IC0655Q) /CSM/FC-IC/FC-IC0655Q.Seq.d/
ACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGCCT
AGAGGTGTCANGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAG
CGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCAC
AAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAG
ACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGT
sequence update 2001.11.10
Translated Amino Acid sequence
TNRNWETRAYRSFMCLNLKPRGVXKSYHRDNWLVAAKRS*rrcflilrcrlflsl*srih
kvldcsptnkerelgldrretg*fyptvvnclrnssmi*


Translated Amino Acid sequence (All Frames)
Frame A:
TNRNWETRAYRSFMCLNLKPRGVXKSYHRDNWLVAAKRS*rrcflilrcrlflsl*srih
kvldcsptnkerelgldrretg*fyptvvnclrnssmi*


Frame B:
ligtgkpgpidplca*ilslevsxkvttgitglwqpsahsdaaf*sfdvgssyhceaeft
kcwivhpltrnvswv*tvvrqvsftlllsivcviva*fs


Frame C:
*selgnqglsilyvlks*a*rcxeklpqg*lacgsqaliatllfdpsmsalliivkqnsq
svglfth*qgt*agfrps*drlvlpyccqlfa***hdl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC0655 (FC-IC0655Q) /CSM/FC-IC/FC-IC0655Q.Seq.d/ 585 e-166
VHC874 (VHC874Q) /CSM/VH/VHC8-D/VHC874Q.Seq.d/ 575 e-163
VHQ477 (VHQ477Q) /CSM/VH/VHQ4-D/VHQ477Q.Seq.d/ 575 e-163
VHQ367 (VHQ367Q) /CSM/VH/VHQ3-C/VHQ367Q.Seq.d/ 575 e-163
VHQ190 (VHQ190Q) /CSM/VH/VHQ1-D/VHQ190Q.Seq.d/ 575 e-163
VHO855 (VHO855Q) /CSM/VH/VHO8-C/VHO855Q.Seq.d/ 575 e-163
VHM596 (VHM596Q) /CSM/VH/VHM5-D/VHM596Q.Seq.d/ 575 e-163
VHL154 (VHL154Q) /CSM/VH/VHL1-C/VHL154Q.Seq.d/ 575 e-163
VHK875 (VHK875Q) /CSM/VH/VHK8-D/VHK875Q.Seq.d/ 575 e-163
VHK846 (VHK846Q) /CSM/VH/VHK8-B/VHK846Q.Seq.d/ 575 e-163

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC136838|AC136838.17 Medicago truncatula clone mth1-5j15, WORKING DRAFT SEQUENCE, 9 unordered pieces. 323 e-175 4
AC121240|AC121240.18 Medicago truncatula clone mth1-51o19, WORKING DRAFT SEQUENCE, 12 unordered pieces. 323 e-175 4
AC122172|AC122172.25 Medicago truncatula clone mth2-27e7, WORKING DRAFT SEQUENCE, 18 unordered pieces. 323 e-172 4
AL158197|AL158197.26 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP11-368H14. 307 e-162 2
AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment. 450 e-158 2
BZ054245|BZ054245.1 jnr37g05.g1 B.oleracea001 Brassica oleracea genomic, DNA sequence. 343 1e-94 2
AY026380|AY026380.1 Salpingoeca infusionum 28S large subunit ribosomal RNA gene, partial sequence. 331 2e-92 2
BH527901|BH527901.1 BOGBK67TR BOGB Brassica oleracea genomic clone BOGBK67, DNA sequence. 335 2e-92 2
CA794674|CA794674.1 Cac_BL_1125 Cac_BL (Bean and Leaf from Amelonardo type Cacao) Theobroma cacao cDNA clone Cac_BL_1125 5', mRNA sequence. 335 2e-92 2
CD268785|CD268785.1 tab01a03.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to TR:O64410 O64410 CYTOCHROME P450 MONOOXYGENASE ;, mRNA sequence. 331 2e-92 2
dna update 2004. 2. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP... 124 2e-28
AY436773_1(AY436773|pid:none) Pyrus communis putative senescence... 70 7e-13
CP001575_406(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 68 4e-12
AK230153_1(AK230153|pid:none) Arabidopsis thaliana mRNA for hypo... 62 1e-10
EU244380_1(EU244380|pid:none) Haliotis diversicolor clone HDr4CJ... 62 6e-09
BC114377_1(BC114377|pid:none) Homo sapiens cDNA clone MGC:134704... 59 5e-08
EF192058_1(EF192058|pid:none) Trichosanthes dioica clone TDM04 p... 46 7e-06
AL844509_690(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 42 0.009
AL844507_287(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 41 0.011
BA000023_1278(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,... 39 0.056
protein update 2009. 7. 1
PSORT

psg: 0.77 gvh: 0.40 alm: 0.64 top: 0.53 tms: 0.00 mit: 0.45 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
32.0 %: mitochondrial
16.0 %: cytoplasmic

>> prediction for FC-IC0655 is nuc

5' end seq. ID FC-IC0655F
5' end seq.
>FC-IC0655F.Seq
ACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGCCT
AGAGGTGTCANGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAG
CGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCAC
AAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAG
ACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTNN
NNNNNNNN
Length of 5' end seq. 308
3' end seq. ID FC-IC0655Z
3' end seq.
>FC-IC0655Z.Seq
NNNNNNNNNNACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAA
TCTTAAGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAG
CGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGC
AGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGAC
CGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATG
ATTTAGT
Length of 3' end seq. 307
Connected seq. ID FC-IC0655P
Connected seq.
>FC-IC0655P.Seq
ACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGCCT
AGAGGTGTCANGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAG
CGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCAC
AAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAG
ACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGT--
--------ACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATC
TTAAGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCG
CTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAG
AATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCG
TCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGAT
TTAGT
Length of connected seq. 595
Full length Seq ID FC-IC0655E
Full length Seq.
>FC-IC0655E.Seq
ACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGCCT
AGAGGTGTCANGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAG
CGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCAC
AAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAG
ACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGT
Length of full length seq. 298