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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0618
Library FC-IC
(Link to library)
Clone ID FC-IC0618
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U07877-1
Original site URL
Representative seq. ID FC-IC0618P
(Link to Original site)
Representative DNA sequence 
>FC-IC0618 (FC-IC0618Q) /CSM/FC-IC/FC-IC0618Q.Seq.d/
ACAATTAAAGATGAATTTAAAAAAGCAGCCGTTGTAATTCCAGATAATGGTGCAGAAGAA
ATTGTTGATCCATGGGTTCGTTTCATTGGAAATGAAGGAGATCCAAACAATGTTAGAACC
TATACCTTTATGGCATATAATTTAACCAATCCAATTGAAACCATGCAAGGTCATTTACCA
AAATATCAAGAAGTTGGTCCATACAGTTACAATTACATCTATGAACGTATCAATGCAAAC
CTCTATGAAGATGATGAAAAATTAAGTTTCAAACTTTGGAAACGTTATTTCCCAATTGTT
GCTGATGGTTATAGAGATCCAACCAAAGATACTATCTATCATTTCAATTTAGTATATGGT
GCTGCCGTTAAACAAGCAGGTAGTGAAGTTGCACTTTCAGTAGCTTTAACAGCAGCTGCA
ATGGGTAAAATTATCACTGGTCTCACTGACCCAAGCTTTAAAGTTAAAGCTGGTTTCGCT
GCTGCACCAACAGTTACTGCTGGAGCTTTTTCAAATCTTTTAACTGCAGCTGGTAATGAC
CCANCTACTGCATGTGGACTTTNGCAAACTAGTXXXXXXXXXXGCCNCTGCAATGGGTAA
AATTATCACTGGTCTCACTGACCCTAGCTTTAAAGTTAAAGCTGGTTTCGCTGCTGCNCC
NACAGTTACTGCTGGAGCTTNTTCAAATCTTTTCCCTGCAGCTGGTAATGACCCAGCTAC
TGCATGTGGACTTTGGCGNGGG
sequence update 2001.11. 5
Translated Amino Acid sequence 
TIKDEFKKAAVVIPDNGAEEIVDPWVRFIGNEGDPNNVRTYTFMAYNLTNPIETMQGHLP
KYQEVGPYSYNYIYERINANLYEDDEKLSFKLWKRYFPIVADGYRDPTKDTIYHFNLVYG
AAVKQAGSEVALSVALTAAAMGKIITGLTDPSFKVKAGFAAAPTVTAGAFSNLLTAAGND
PXTACGLXQTS---

---AXAMGKIITGLTDPSFKVKAGFAAAPTVTAGAXSNLFPAAGNDPATACGLWRG
Translated Amino Acid sequence (All Frames) 
Frame A:
TIKDEFKKAAVVIPDNGAEEIVDPWVRFIGNEGDPNNVRTYTFMAYNLTNPIETMQGHLP
KYQEVGPYSYNYIYERINANLYEDDEKLSFKLWKRYFPIVADGYRDPTKDTIYHFNLVYG
AAVKQAGSEVALSVALTAAAMGKIITGLTDPSFKVKAGFAAAPTVTAGAFSNLLTAAGND
PXTACGLXQTS---

---AXAMGKIITGLTDPSFKVKAGFAAAPTVTAGAXSNLFPAAGNDPATACGLWRG

Frame B:
qlkmnlkkqpl*fqimvqkkllihgfvslemkeiqtmlepiplwhii*piqlkpckviyq
nikklvhtvtitsmnvsmqtsmkmmkn*vsnfgnvisqlllmvieiqpkilsiisi*ymv
lplnkqvvklhfq*l*qqlqwvklslvsltqalklklvsllhqqlllelfqif*lqlvmt
xllhvdfxkl---

---plqwvklslvsltlalklklvsllxxqlllelxqifslqlvmtqllhvdfgx

Frame C:
n*r*i*kssrcnsr*wcrrnc*smgsfhwk*rrskqc*nlylygi*fnqsn*nharsftk
isrswsiqlqlhl*tyqckpl*r**kikfqtletlfpncc*wl*rsnqryylsfqfsiwc
cr*tsr**sctfssfnsscng*nyhwsh*pkl*s*swfrcctnsycwsffksfncsw**p
xycmwtxan*---

---xcng*nyhwsh*p*l*s*swfrccxxsycwsxfksfpcsw**psycmwtlax
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0618 (FC-IC0618Q) /CSM/FC-IC/FC-IC0618Q.Seq.d/                  1370   0.0
FC-IC1182 (FC-IC1182Q) /CSM/FC-IC/FC-IC1182Q.Seq.d/                  1124   0.0
FC-IC1150 (FC-IC1150Q) /CSM/FC-IC/FC-IC1150Q.Seq.d/                  1124   0.0
FC-IC0840 (FC-IC0840Q) /CSM/FC-IC/FC-IC0840Q.Seq.d/                  1124   0.0
FC-IC1504 (FC-IC1504Q) /CSM/FC-IC/FC-IC1504Q.Seq.d/                  1118   0.0
FC-IC0304 (FC-IC0304Q) /CSM/FC-IC/FC-IC0304Q.Seq.d/                  1116   0.0
FC-IC0275 (FC-IC0275Q) /CSM/FC-IC/FC-IC0275Q.Seq.d/                  1116   0.0
FC-IC0549 (FC-IC0549Q) /CSM/FC-IC/FC-IC0549Q.Seq.d/                  1068   0.0
FC-IC0758 (FC-IC0758Q) /CSM/FC-IC/FC-IC0758Q.Seq.d/                   955   0.0
FC-IC0104 (FC-IC0104Q) /CSM/FC-IC/FC-IC0104Q.Seq.d/                   527   e-149
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF238324|AF238324.1 Dictyostelium discoideum lysosomal integral membrane protein II (lmpB) mRNA, complete cds.  1124   0.0    1
AC146585|AC146585.12 Medicago truncatula clone mth2-68o3, WORKING DRAFT SEQUENCE.    40   0.018  8
AC022097|AC022097.4 Homo sapiens chromosome 5 clone CTB-44B7, WORKING DRAFT SEQUENCE, 37 unordered pieces.    50   0.044  1
AC009229|AC009229.5 Homo sapiens clone RP11-314C9, complete sequence.    50   0.044  1
AE010463|AE010463.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 5 of 197 of the complete genome.    36   0.37   3
AC142562|AC142562.2 Bos taurus clone RP42-371H23, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46   0.69   1
CA728978|CA728978.1 wdi1c.pk007.g17 wdi1c Triticum aestivum cDNA clone wdi1c.pk007.g17 5' end, mRNA sequence.    46   0.69   1
AC100177|AC100177.3 Mus musculus clone RP23-51A7, WORKING DRAFT SEQUENCE, 15 unordered pieces.    46   0.69   1
BJ256871|BJ256871.1 Triticum aestivum cDNA clone:whh18m06, 5' end, single read.    46   0.69   1
BJ270576|BJ270576.1 Triticum aestivum cDNA clone:whoh8h19, 5' end, single read.    46   0.69   1
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9BKJ9) RecName: Full=Lysosome membrane protein 2-B; AltName: F...   386   e-106
(P27615) RecName: Full=Lysosome membrane protein 2; AltName: Ful...    50   5e-05
AY496973_1(AY496973|pid:none) Schistosoma japonicum CD36-related...    47   6e-04
AY810529_1(AY810529|pid:none) Schistosoma japonicum SJCHGC01875 ...    46   0.001
AF323588_1(AF323588|pid:none) Manduca sexta sensory neuron membr...    45   0.002
AY814722_1(AY814722|pid:none) Schistosoma japonicum SJCHGC06304 ...    45   0.003
(Q14108) RecName: Full=Lysosome membrane protein 2; AltName: Ful...    44   0.004
AM905328_1(AM905328|pid:none) Heliothis virescens mRNA for senso...    44   0.005
(Q55FQ9) RecName: Full=Lysosome membrane protein 2-C; AltName: F...    44   0.007
DQ893535_1(DQ893535|pid:none) Synthetic construct clone IMAGE:10...    44   0.007
protein update 2009. 5.21
PSORT 

 psg: 0.73  gvh: 0.34  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for FC-IC0618 is cyt
5' end seq. ID FC-IC0618F
5' end seq. 
>FC-IC0618F.Seq
ACAATTAAAGATGAATTTAAAAAAGCAGCCGTTGTAATTCCAGATAATGGTGCAGAAGAA
ATTGTTGATCCATGGGTTCGTTTCATTGGAAATGAAGGAGATCCAAACAATGTTAGAACC
TATACCTTTATGGCATATAATTTAACCAATCCAATTGAAACCATGCAAGGTCATTTACCA
AAATATCAAGAAGTTGGTCCATACAGTTACAATTACATCTATGAACGTATCAATGCAAAC
CTCTATGAAGATGATGAAAAATTAAGTTTCAAACTTTGGAAACGTTATTTCCCAATTGTT
GCTGATGGTTATAGAGATCCAACCAAAGATACTATCTATCATTTCAATTTAGTATATGGT
GCTGCCGTTAAACAAGCAGGTAGTGAAGTTGCACTTTCAGTAGCTTTAACAGCAGCTGCA
ATGGGTAAAATTATCACTGGTCTCACTGACCCAAGCTTTAAAGTTAAAGCTGGTTTCGCT
GCTGCACCAACAGTTACTGCTGGAGCTTTTTCAAATCTTTTAACTGCAGCTGGTAATGAC
CCANCTACTGCATGTGGACTTTNGCAAACTAGTNNNNNNNNNN
Length of 5' end seq. 583
3' end seq. ID FC-IC0618Z
3' end seq. 
>FC-IC0618Z.Seq
NNNNNNNNNNGCCNCTGCAATGGGTAAAATTATCACTGGTCTCACTGACCCTAGCTTTAA
AGTTAAAGCTGGTTTCGCTGCTGCNCCNACAGTTACTGCTGGAGCTTNTTCAAATCTTTT
CCCTGCAGCTGGTAATGACCCAGCTACTGCATGTGGACTTTGGCGNGGG
Length of 3' end seq. 169
Connected seq. ID FC-IC0618P
Connected seq. 
>FC-IC0618P.Seq
ACAATTAAAGATGAATTTAAAAAAGCAGCCGTTGTAATTCCAGATAATGGTGCAGAAGAA
ATTGTTGATCCATGGGTTCGTTTCATTGGAAATGAAGGAGATCCAAACAATGTTAGAACC
TATACCTTTATGGCATATAATTTAACCAATCCAATTGAAACCATGCAAGGTCATTTACCA
AAATATCAAGAAGTTGGTCCATACAGTTACAATTACATCTATGAACGTATCAATGCAAAC
CTCTATGAAGATGATGAAAAATTAAGTTTCAAACTTTGGAAACGTTATTTCCCAATTGTT
GCTGATGGTTATAGAGATCCAACCAAAGATACTATCTATCATTTCAATTTAGTATATGGT
GCTGCCGTTAAACAAGCAGGTAGTGAAGTTGCACTTTCAGTAGCTTTAACAGCAGCTGCA
ATGGGTAAAATTATCACTGGTCTCACTGACCCAAGCTTTAAAGTTAAAGCTGGTTTCGCT
GCTGCACCAACAGTTACTGCTGGAGCTTTTTCAAATCTTTTAACTGCAGCTGGTAATGAC
CCANCTACTGCATGTGGACTTTNGCAAACTAGT----------GCCNCTGCAATGGGTAA
AATTATCACTGGTCTCACTGACCCTAGCTTTAAAGTTAAAGCTGGTTTCGCTGCTGCNCC
NACAGTTACTGCTGGAGCTTNTTCAAATCTTTTCCCTGCAGCTGGTAATGACCCAGCTAC
TGCATGTGGACTTTGGCGNGGG
Length of connected seq. 732
Full length Seq ID -
Full length Seq. -
Length of full length seq. -