FC-IC0586
Library FC-IC
(Link to library)
Clone ID FC-IC0586
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15212-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>FC-IC0586 (FC-IC0586Q) /CSM/FC-IC/FC-IC0586Q.Seq.d/
XXXXXXXXXXTGGAAATCCCCANANTTCGGCTTAGGGGGGGTGCNGCNAAAGGGGTNCGG
CTTTTTTTTTTTAAAAGATTATTANGTTTTTTAATNATTATATTTTTTTATTTAAGCAGA
GATTTCTTGGGTGGCGACAGATTTCTTCTTTTGGGCGGATTCTTCAGCTGGTTTTGGGAC
AGCTTTTTCAACTTCAGTGAGGATGAATTCAACAGTTGATGGTGAACACATGTATGGATT
GATACGACCATGTGCTCTGTAGGTTCTTCTACGTTGTTGTTGAGCACGTTGAACTTGAAC
GTGAGCGATCTTGAGTTTTTCAACATTTAAACCCTTAGCTTCAGCGTTGGCTTCAGCATT
TTGGAGGAGTGATAAAATGTGCTCAACAGATTTCTTTGGCC
sequence update 2001.11. 5
Translated Amino Acid sequence
---EIPXXRLRGGAAKGVRLFFFKRLLXFLXIIFFYLSRDFLGGDRFLLLGGFFSWFWDS
FFNFSEDEFNS*w*thvwidttmcsvgsstlllstlnlnvsdleffni*tlsfsvgfsil
ee**nvlnrflw


Translated Amino Acid sequence (All Frames)
Frame A:
---gnpxxsa*ggcxxrgxafff*kiixffnxyiflfkqrflgwrqissfgrilqlvlgq
lfqlq*g*iqqlmvntcmd*ydhvlcrffyvvvehvelerers*vfqhlnp*lqrwlqhf
ggvikcaqqisla


Frame B:
---EIPXXRLRGGAAKGVRLFFFKRLLXFLXIIFFYLSRDFLGGDRFLLLGGFFSWFWDS
FFNFSEDEFNS*w*thvwidttmcsvgsstlllstlnlnvsdleffni*tlsfsvgfsil
ee**nvlnrflw


Frame C:
---kspxfglggvxxkgxgffflkdyxvf*xlyffi*aeiswvatdfffwadssagfgta
fstsvrmnstvdgehmyglirpcal*vllrcc*ar*t*t*ailsfstfkplasalasafw
rsdkmcstdffg


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC0586 (FC-IC0586Q) /CSM/FC-IC/FC-IC0586Q.Seq.d/ 579 e-164
VSG433 (VSG433Q) /CSM/VS/VSG4-B/VSG433Q.Seq.d/ 571 e-162
VSF481 (VSF481Q) /CSM/VS/VSF4-D/VSF481Q.Seq.d/ 571 e-162
VSF310 (VSF310Q) /CSM/VS/VSF3-A/VSF310Q.Seq.d/ 571 e-162
VSE411 (VSE411Q) /CSM/VS/VSE4-A/VSE411Q.Seq.d/ 571 e-162
VSC895 (VSC895Q) /CSM/VS/VSC8-D/VSC895Q.Seq.d/ 571 e-162
VSB717 (VSB717Q) /CSM/VS/VSB7-A/VSB717Q.Seq.d/ 571 e-162
VSB680 (VSB680Q) /CSM/VS/VSB6-D/VSB680Q.Seq.d/ 571 e-162
VSB632 (VSB632Q) /CSM/VS/VSB6-B/VSB632Q.Seq.d/ 571 e-162
VSB609 (VSB609Q) /CSM/VS/VSB6-A/VSB609Q.Seq.d/ 571 e-162

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CD808788|CD808788.1 LcA06P08d Leymus chinensis leaf cDNA library Leymus chinensis cDNA clone LcA06P08, mRNA sequence. 50 0.023 1
AL385159|AL385159.1 Medicago truncatula EST MtBC26G02F1 : T3 end of clone MtBC26G02 of cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic). 50 0.023 1
AL384688|AL384688.1 Medicago truncatula EST MtBC23G08F1 : T3 end of clone MtBC23G08 of cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic). 50 0.023 1
CA781211|CA781211.1 042B07AF Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA sequence. 50 0.023 1
AL384689|AL384689.1 Medicago truncatula EST MtBC23G08R1 : T7 end of clone MtBC23G08 of cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic). 50 0.023 1
CF124116|CF124116.1 UI-HF-CH0.2-auv-d-09-0-UI.r1 NIH_MGC_216 Homo sapiens cDNA 5', mRNA sequence. 40 0.063 2
AW328326|AW328326.1 ds01g07.y1 NIH_MGC_4 Homo sapiens cDNA clone IMAGE:2847540 3', mRNA sequence. 40 0.069 2
BM313141|BM313141.1 ig80a05.y1 HR85 islet Homo sapiens cDNA 5' similar to SW:RL17_HUMAN P18621 60S RIBOSOMAL PROTEIN L17 ;, mRNA sequence. 40 0.081 2
BF684780|BF684780.1 602141976F1 NIH_MGC_46 Homo sapiens cDNA clone IMAGE:4303146 5', mRNA sequence. 48 0.091 1
AC069181|AC069181.9 Homo sapiens chromosome 8, clone RP11-200A24, complete sequence. 48 0.091 1
dna update 2003.12.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P18621) RecName: Full=60S ribosomal protein L17; AltName: Full=... 91 1e-17
(P24049) RecName: Full=60S ribosomal protein L17; AltName: Full=... 91 1e-17
BC094640_1(BC094640|pid:none) Mus musculus ribosomal protein L17... 91 1e-17
AB173559_1(AB173559|pid:none) Macaca fascicularis brain cDNA clo... 91 1e-17
AB172151_1(AB172151|pid:none) Macaca fascicularis brain cDNA clo... 91 1e-17
AB098987_1(AB098987|pid:none) Bos taurus mRNA for similar to rib... 91 1e-17
AY650298_1(AY650298|pid:none) Macaca fascicularis ribosomal prot... 91 1e-17
AB374952_1(AB374952|pid:none) Solea senegalensis RPL17 mRNA for ... 91 1e-17
BC077192_1(BC077192|pid:none) Xenopus laevis MGC78885 protein, m... 89 3e-17
BC043971_1(BC043971|pid:none) Xenopus laevis similar to ribosoma... 89 3e-17
protein update 2009. 5.21
PSORT

psg: 0.63 gvh: 0.51 alm: 0.32 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
28.0 %: mitochondrial
24.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for FC-IC0586 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-IC0586Z
3' end seq.
>FC-IC0586Z.Seq
NNNNNNNNNNTGGAAATCCCCANANTTCGGCTTAGGGGGGGTGCNGCNAAAGGGGTNCGG
CTTTTTTTTTTTAAAAGATTATTANGTTTTTTAATNATTATATTTTTTTATTTAAGCAGA
GATTTCTTGGGTGGCGACAGATTTCTTCTTTTGGGCGGATTCTTCAGCTGGTTTTGGGAC
AGCTTTTTCAACTTCAGTGAGGATGAATTCAACAGTTGATGGTGAACACATGTATGGATT
GATACGACCATGTGCTCTGTAGGTTCTTCTACGTTGTTGTTGAGCACGTTGAACTTGAAC
GTGAGCGATCTTGAGTTTTTCAACATTTAAACCCTTAGCTTCAGCGTTGGCTTCAGCATT
TTGGAGGAGTGATAAAATGTGCTCAACAGATTTCTTTGGCC
Length of 3' end seq. 401
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -