NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0579
Library FC-IC
(Link to library)
Clone ID FC-IC0579
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16527-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>FC-IC0579 (FC-IC0579Q) /CSM/FC-IC/FC-IC0579Q.Seq.d/
ACCATATTTAATAAGGTAACGAGATTCAAGTGCTGCACTACTAGCAAATGCCCAACATGA
TCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAANNCCAATCTACTGTAAGAGT
TGATGTTGGGGCTGGTGTTGNTGGGGCTGGTGTTGTTGNTTTTNGAGTAXXXXXXXXXX
sequence update 2001.11. 5
Translated Amino Acid sequence 
pylir*rdssaallanaqhdphcp*SLIGVWYEXQSTVRVDVGAGVXGAGVVXFX---
Translated Amino Acid sequence (All Frames) 
Frame A:
tifnkvtrfkccttskcpt*salslisywslv*xpiycks*cwgwcxwgwccxfxs---


Frame B:
pylir*rdssaallanaqhdphcp*SLIGVWYEXQSTVRVDVGAGVXGAGVVXFX---


Frame C:
hi**gneiqvlhy*qmpnmirivldlllefgmxxnll*elmlglvlxglvllxxe---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1760 (FC-IC1760Q) /CSM/FC-IC/FC-IC1760Q.Seq.d/                   305   1e-82
FC-IC1748 (FC-IC1748Q) /CSM/FC-IC/FC-IC1748Q.Seq.d/                   305   1e-82
FC-IC1665 (FC-IC1665Q) /CSM/FC-IC/FC-IC1665Q.Seq.d/                   305   1e-82
FC-IC1648 (FC-IC1648Q) /CSM/FC-IC/FC-IC1648Q.Seq.d/                   305   1e-82
FC-IC1642 (FC-IC1642Q) /CSM/FC-IC/FC-IC1642Q.Seq.d/                   305   1e-82
FC-IC1631 (FC-IC1631Q) /CSM/FC-IC/FC-IC1631Q.Seq.d/                   305   1e-82
FC-IC1622 (FC-IC1622Q) /CSM/FC-IC/FC-IC1622Q.Seq.d/                   305   1e-82
FC-IC1583 (FC-IC1583Q) /CSM/FC-IC/FC-IC1583Q.Seq.d/                   305   1e-82
FC-IC1527 (FC-IC1527Q) /CSM/FC-IC/FC-IC1527Q.Seq.d/                   305   1e-82
FC-IC1523 (FC-IC1523Q) /CSM/FC-IC/FC-IC1523Q.Seq.d/                   305   1e-82
own update 2001.11.18
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB088483|AB088483.1 Dictyostelium discoideum gene for gamete and mating-type specific protein A, complete cds.   174   4e-72  2
U28755|U28755.1 Entamoeba invadens cysteine proteinase gene, partial cds.    60   1e-05  1
BH165563|BH165563.1 ENTSB84TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    60   1e-05  1
M94163|M94163.1 Entamoeba histolytica (clone gEh-CPp2) cysteine proteinase (CPp2) gene, complete cds.    60   1e-05  1
AZ686636|AZ686636.1 ENTFZ42TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    60   1e-05  1
AZ535019|AZ535019.1 ENTBP24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    58   4e-05  1
CD451153|CD451153.1 USDA-FP_103216 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-42_H04 5', mRNA sequence.    52   0.002  1
S58670|S58670.1 ACP2=cysteine proteinase [Entamoeba histolytica, HM-1, Genomic/mRNA, 933 nt].    52   0.002  1
AV202732|AV202732.1 Caenorhabditis elegans cDNA clone:yk554b2 : 5' end, single read.    48   0.038  1
AU214559|AU214559.1 Caenorhabditis elegans cDNA clone:yk814f02 : 3' end, single read.    48   0.038  1
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB088483_1(AB088483|pid:none) Dictyostelium discoideum gmsA gene...    88   8e-17
BC080004_1(BC080004|pid:none) Xenopus laevis MGC81823 protein, m...    54   1e-06
BT050087_1(BT050087|pid:none) Salmo salar clone ssal-evd-563-114...    54   1e-06
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...    54   2e-06
AB091670_1(AB091670|pid:none) Pandalus borealis PbCtL mRNA for c...    54   2e-06
FJ807676_1(FJ807676|pid:none) Dicentrarchus labrax cathepsin L m...    53   3e-06
KHCHL(S00081;A25654;A26818;B25654)cathepsin L (EC 3.4.22.15) - c...    53   3e-06
AY126275_28(AY126275|pid:none) Mamestra configurata nucleopolyhe...    53   4e-06
AX497240_1(AX497240|pid:none) Sequence 7 from Patent WO0229058.        53   4e-06
AF194426_1(AF194426|pid:none) Myxine glutinosa clone hicl20 cyst...    52   6e-06
protein update 2009. 5.21
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for FC-IC0579 is cyt
5' end seq. ID FC-IC0579F
5' end seq. 
>FC-IC0579F.Seq
ACCATATTTAATAAGGTAACGAGATTCAAGTGCTGCACTACTAGCAAATGCCCAACATGA
TCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAANNCCAATCTACTGTAAGAGT
TGATGTTGGGGCTGGTGTTGNTGGGGCTGGTGTTGTTGNTTTTNGAGTANNNNNNNNNN
Length of 5' end seq. 179
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -