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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0577
Library FC-IC
(Link to library)
Clone ID FC-IC0577
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14260-1
Original site URL
Representative seq. ID FC-IC0577P
(Link to Original site)
Representative DNA sequence 
>FC-IC0577 (FC-IC0577Q) /CSM/FC-IC/FC-IC0577Q.Seq.d/
ACTGATCAATATGGTTGTGGTTCATTTGAGGATAGATGCAGATTCTTATTTGATATTGTT
AGAGCAATTCGTTCAGTTTGGCCAGTTGAGAAAGCATTGGGTGTGCGTTTATCATGTGAG
GAATGGTGTGAAGGTGGTTGGACATTAGATGACACAATTAGAGTTGCAAAGATTTTGGAG
ACTATGGATGTCGACGTATTCGATTGCTCCTCTGGTGGCAATTCAATGTCTCAATCAATC
ACCATTGGTCCATGCTATCAAGTACCATTGGCTCATGCCGTTAAAAAGGCTACCTCTAAA
TTATCTGTTGCTTGCGTTGGTTTAATTAATTCTGGTAAAGAAATTGAAGAAATTCTTCAA
CAAGATCGTGCTGATTTAGTATTTTTAGCAAGACCATTCTTAAGAAATCCACATTTCACT
TATCAAGTTGCTCATGAATTAAATATTAAAATTGATTATAATATTCATTATAATAGAGGT
AGATTCACAAATACTGCTTATTAAAAAAAAAAAAAAAAAAATTTGTXXXXXXXXXXTTAA
ANAATTNNTNAAAATAAAGGTAGATTCNCNAATTNAGCTTNTTAAAAAAAAAAAAAAAAA
AGCTTGT
sequence update 2001.11. 5
Translated Amino Acid sequence 
linmvvvhlridadsylilleqfvqfgqlrkhwvcvyhvrngvkvvgh*mtqlelqrfwr
lwmstysiaplvaiqclnqsplvhaikyhwlmplkrlplnylllalv*lilvkklkkffn
kivli*yf*qdhs*eihislikllmn*ILKLIIIFIIIEVDSQILLIKKKKKKIC---

---KXXXKIKVDSXIXLXKKKKKKAC
Translated Amino Acid sequence (All Frames) 
Frame A:
tdqygcgsfedrcrflfdivrairsvwpvekalgvrlsceewceggwtlddtirvakile
tmdvdvfdcssggnsmsqsitigpcyqvplahavkkatsklsvacvglinsgkeieeilq
qdradlvflarpflrnphftyqvahelnikidynihynrgrftntay*kkkkknl---

---lxnxxk*r*ixxxsxlkkkkkkl

Frame B:
linmvvvhlridadsylilleqfvqfgqlrkhwvcvyhvrngvkvvgh*mtqlelqrfwr
lwmstysiaplvaiqclnqsplvhaikyhwlmplkrlplnylllalv*lilvkklkkffn
kivli*yf*qdhs*eihislikllmn*ILKLIIIFIIIEVDSQILLIKKKKKKIC---

---*xixxnkgrfxnxax*kkkkksl

Frame C:
*siwlwfi*g*mqili*yc*snsfslas*esigcafim*gmv*rwldir*hn*sckdfgd
ygcrrirlllwwqfnvsinhhwsmlsstigscr*kgyl*iicclrwfn*fw*rn*rnsst
rsc*fsifsktilkkstfhlsscs*iky*n*l*ysl**r*ihkycllkkkkkkf---

---KXXXKIKVDSXIXLXKKKKKKAC
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0577 (FC-IC0577Q) /CSM/FC-IC/FC-IC0577Q.Seq.d/                   995   0.0
CHC424 (CHC424Q) /CSM/CH/CHC4-A/CHC424Q.Seq.d/                        882   0.0
SFH454 (SFH454Q) /CSM/SF/SFH4-C/SFH454Q.Seq.d/                        862   0.0
CHC472 (CHC472Q) /CSM/CH/CHC4-C/CHC472Q.Seq.d/                        603   e-171
CHC372 (CHC372Q) /CSM/CH/CHC3-C/CHC372Q.Seq.d/                        389   e-107
VFJ210 (VFJ210Q) /CSM/VF/VFJ2-A/VFJ210Q.Seq.d/                         46   6e-04
VFI446 (VFI446Q) /CSM/VF/VFI4-B/VFI446Q.Seq.d/                         46   6e-04
VFI394 (VFI394Q) /CSM/VF/VFI3-D/VFI394Q.Seq.d/                         46   6e-04
VHI629 (VHI629Q) /CSM/VH/VHI6-B/VHI629Q.Seq.d/                         42   0.010
VFO825 (VFO825Q) /CSM/VF/VFO8-B/VFO825Q.Seq.d/                         42   0.010
own update 2002.10. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC112992|AC112992.4 Mus musculus clone RP24-377E21, WORKING DRAFT SEQUENCE, 6 ordered pieces.    50   0.018  4
AZ002478|AZ002478.1 RPCI-23-305N7.TV RPCI-23 Mus musculus genomic clone RPCI-23-305N7, genomic survey sequence.    50   0.036  1
AZ002699|AZ002699.1 RPCI-23-305P9.TV RPCI-23 Mus musculus genomic clone RPCI-23-305P9, genomic survey sequence.    50   0.036  1
AC016861|AC016861.2 Homo sapiens clone RP11-13N14, LOW-PASS SEQUENCE SAMPLING.    48   0.14   1
AC068556|AC068556.10 Homo sapiens chromosome 10 clone RP11-415G6, complete sequence.    48   0.14   1
AL807235|AL807235.2 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-237L11.    48   0.14   1
AC011585|AC011585.3 Homo sapiens clone RP11-13K16, WORKING DRAFT SEQUENCE, 9 unordered pieces.    48   0.14   1
AC068060|AC068060.5 Homo sapiens chromosome 10 clone RP11-359B3, complete sequence.    48   0.14   1
AL805915|AL805915.9 Human DNA sequence from clone RP11-118H17 on chromosome 10.    48   0.14   1
AC106385|AC106385.5 Rattus norvegicus clone CH230-135E6, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38   0.39   4
dna update 2003.12.20
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117072_14(AC117072|pid:none) Dictyostelium discoideum chromoso...   147   2e-34
CP000359_959(CP000359|pid:none) Deinococcus geothermalis DSM 113...   145   1e-33
CP000473_670(CP000473|pid:none) Solibacter usitatus Ellin6076, c...   137   2e-31
CP001032_3793(CP001032|pid:none) Opitutus terrae PB90-1, complet...   132   7e-30
CP001114_1097(CP001114|pid:none) Deinococcus deserti VCD115, com...   131   2e-29
CP000284_1915(CP000284|pid:none) Methylobacillus flagellatus KT,...   129   6e-29
CU207211_11(CU207211|pid:none) Herminiimonas arsenicoxydans chro...   123   3e-27
CP000390_1164(CP000390|pid:none) Mesorhizobium sp. BNC1, complet...   123   4e-27
AM238663_1097(AM238663|pid:none) Streptomyces ambofaciens ATCC 2...   122   6e-27
DQ810790_8(DQ810790|pid:none) Acidithiobacillus caldus strain #6...   122   1e-26
protein update 2009. 5.21
PSORT 

 psg: 1.01  gvh: 0.47  alm: 0.21  top: 0.73  tms: 0.07  mit: 0.19  mip: 0.00
 nuc: 0.49  erl: 0.00  erm: 1.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.10  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 24.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for FC-IC0577 is nuc
5' end seq. ID FC-IC0577F
5' end seq. 
>FC-IC0577F.Seq
ACTGATCAATATGGTTGTGGTTCATTTGAGGATAGATGCAGATTCTTATTTGATATTGTT
AGAGCAATTCGTTCAGTTTGGCCAGTTGAGAAAGCATTGGGTGTGCGTTTATCATGTGAG
GAATGGTGTGAAGGTGGTTGGACATTAGATGACACAATTAGAGTTGCAAAGATTTTGGAG
ACTATGGATGTCGACGTATTCGATTGCTCCTCTGGTGGCAATTCAATGTCTCAATCAATC
ACCATTGGTCCATGCTATCAAGTACCATTGGCTCATGCCGTTAAAAAGGCTACCTCTAAA
TTATCTGTTGCTTGCGTTGGTTTAATTAATTCTGGTAAAGAAATTGAAGAAATTCTTCAA
CAAGATCGTGCTGATTTAGTATTTTTAGCAAGACCATTCTTAAGAAATCCACATTTCACT
TATCAAGTTGCTCATGAATTAAATATTAAAATTGATTATAATATTCATTATAATAGAGGT
AGATTCACAAATACTGCTTATTAAAAAAAAAAAAAAAAAAATTTGTNNNNNNNNNN
Length of 5' end seq. 536
3' end seq. ID FC-IC0577Z
3' end seq. 
>FC-IC0577Z.Seq
NNNNNNNNNNTTAAANAATTNNTNAAAATAAAGGTAGATTCNCNAATTNAGCTTNTTAAA
AAAAAAAAAAAAAAAGCTTGT
Length of 3' end seq. 81
Connected seq. ID FC-IC0577P
Connected seq. 
>FC-IC0577P.Seq
ACTGATCAATATGGTTGTGGTTCATTTGAGGATAGATGCAGATTCTTATTTGATATTGTT
AGAGCAATTCGTTCAGTTTGGCCAGTTGAGAAAGCATTGGGTGTGCGTTTATCATGTGAG
GAATGGTGTGAAGGTGGTTGGACATTAGATGACACAATTAGAGTTGCAAAGATTTTGGAG
ACTATGGATGTCGACGTATTCGATTGCTCCTCTGGTGGCAATTCAATGTCTCAATCAATC
ACCATTGGTCCATGCTATCAAGTACCATTGGCTCATGCCGTTAAAAAGGCTACCTCTAAA
TTATCTGTTGCTTGCGTTGGTTTAATTAATTCTGGTAAAGAAATTGAAGAAATTCTTCAA
CAAGATCGTGCTGATTTAGTATTTTTAGCAAGACCATTCTTAAGAAATCCACATTTCACT
TATCAAGTTGCTCATGAATTAAATATTAAAATTGATTATAATATTCATTATAATAGAGGT
AGATTCACAAATACTGCTTATTAAAAAAAAAAAAAAAAAAATTTGT----------TTAA
ANAATTNNTNAAAATAAAGGTAGATTCNCNAATTNAGCTTNTTAAAAAAAAAAAAAAAAA
AGCTTGT
Length of connected seq. 597
Full length Seq ID -
Full length Seq. -
Length of full length seq. -