FC-IC0565
Library FC-IC
(Link to library)
Clone ID FC-IC0565
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03381-1
Original site URL
Representative seq. ID FC-IC0565F
(Link to Original site)
Representative DNA sequence
>FC-IC0565 (FC-IC0565Q) /CSM/FC-IC/FC-IC0565Q.Seq.d/
AAGTCTTCTGGCAGCGACAGCATCTGGTATGGCGCTGACAGACCCAAGTTTTTGGGCCCT
TTCTCCGGTGAGACCCCCTCGTACCTGAACGGTGAGTTCGCTGGAGACTACNGCTGGGAC
ACCGCCGGACTCTCGTCGGACCCCGAGACCTTCGCCCGCAACAGGGAGTTGGAGGTCATC
CACGCCCGCTGGGCCATGCTCGGAGCTCTGGGGTGCCTGACXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
KSSGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYXWDTAGLSSDPETFARNRELEVI
HARWAMLGALGCL---


Translated Amino Acid sequence (All Frames)
Frame A:
KSSGSDSIWYGADRPKFLGPFSGETPSYLNGEFAGDYXWDTAGLSSDPETFARNRELEVI
HARWAMLGALGCL---


Frame B:
sllaatasgmaltdpsfwalspvrpprt*tvsslettagtppdsrrtprpspatgswrss
tpagpcselwga*---


Frame C:
vfwqrqhlvwr*qtqvfgpflr*dplvper*vrwrlxlghrrtlvgprdlrpqqgvgghp
rplgharssgvp---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC0565 (FC-IC0565Q) /CSM/FC-IC/FC-IC0565Q.Seq.d/ 432 e-120

own update 2001.10. 8
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BJ163777|BJ163777.1 Physcomitrella patens subsp. patens cDNA clone:pph14m13, 5' end, single read. 432 e-118 1
BJ158566|BJ158566.1 Physcomitrella patens subsp. patens cDNA clone:pph12g01, 5' end, single read. 432 e-118 1
BJ200225|BJ200225.1 Physcomitrella patens subsp. patens cDNA clone:pphn3o10, 5' end, single read. 432 e-118 1
BJ161194|BJ161194.1 Physcomitrella patens subsp. patens cDNA clone:pph21f21, 5' end, single read. 432 e-118 1
BJ190579|BJ190579.1 Physcomitrella patens subsp. patens cDNA clone:pphn10n20, 5' end, single read. 432 e-118 1
BJ163480|BJ163480.1 Physcomitrella patens subsp. patens cDNA clone:pph35k10, 5' end, single read. 432 e-118 1
BJ164520|BJ164520.1 Physcomitrella patens subsp. patens cDNA clone:pph9p24, 5' end, single read. 432 e-118 1
BJ159487|BJ159487.1 Physcomitrella patens subsp. patens cDNA clone:pph16d16, 5' end, single read. 432 e-118 1
BJ160319|BJ160319.1 Physcomitrella patens subsp. patens cDNA clone:pph18l05, 5' end, single read. 432 e-118 1
BJ161946|BJ161946.1 Physcomitrella patens subsp. patens cDNA clone:pph23i14, 5' end, single read. 432 e-118 1
dna update 2003.12.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB115771_1(AB115771|pid:none) Physcomitrella patens subsp. paten... 157 8e-38
AB026686_1(AB026686|pid:none) Physcomitrella patens mRNA for chl... 157 8e-38
AB115772_1(AB115772|pid:none) Physcomitrella patens subsp. paten... 154 9e-37
EU780143_1(EU780143|pid:none) Phyllostachys edulis chloroplast c... 132 3e-30
(P12328) RecName: Full=Chlorophyll a-b binding protein of LHCII ... 132 5e-30
EF091845_1(EF091845|pid:none) Lilium longiflorum chlorophyll a/b... 131 6e-30
EF147245_1(EF147245|pid:none) Populus trichocarpa clone WS01229_... 130 1e-29
EF576386_1(EF576386|pid:none) Oryza sativa (indica cultivar-grou... 130 1e-29
AF165529_1(AF165529|pid:none) Rumex palustris chlorophyll a/b bi... 130 1e-29
S37099(S37099) chlorophyll a/b binding protein - prince's feathe... 130 1e-29
protein update 2009. 5.21
PSORT

psg: 0.61 gvh: 0.49 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
20.0 %: mitochondrial
20.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for FC-IC0565 is cyt

5' end seq. ID FC-IC0565F
5' end seq.
>FC-IC0565F.Seq
AAGTCTTCTGGCAGCGACAGCATCTGGTATGGCGCTGACAGACCCAAGTTTTTGGGCCCT
TTCTCCGGTGAGACCCCCTCGTACCTGAACGGTGAGTTCGCTGGAGACTACNGCTGGGAC
ACCGCCGGACTCTCGTCGGACCCCGAGACCTTCGCCCGCAACAGGGAGTTGGAGGTCATC
CACGCCCGCTGGGCCATGCTCGGAGCTCTGGGGTGCCTGAC----------
Length of 5' end seq. 221
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -