FC-IC0564
Library FC-IC
(Link to library)
Clone ID FC-IC0564
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16036-1
Original site URL
Representative seq. ID FC-IC0564P
(Link to Original site)
Representative DNA sequence
>FC-IC0564 (FC-IC0564Q) /CSM/FC-IC/FC-IC0564Q.Seq.d/
ACAAGTAAATAAAAAAGATATTACAACAGAATATTTAAATAGTAAAAAGATTGATAGAGA
ATTAAAACAAGAATCAACAACATTACAACCATTGAAATTATTATTATTAGGTNGTGGTGA
ATGTGNTNNATCAACCATTTTCAAACAAATNATTTCATTCCAANATGAANCAACTAAAAA
AXXXXXXXXXXGCANAATATTTAAATANGTAAAAAGANTGATAGAGAATTAAANCNANAA
TCAANAACATTACANCCATTGAAATTATTATTATTAGGTAGTGGTNAATGTGGTAAATCA
ACCATTTTCAAACAAATCATTTCATTCCAAGATGAAGCAACTAAAAAAGAATATACACCA
CCATCTGATTATGTAATTAAAAATATATTTTTAAATATTTTAACAGCAACAAGT
sequence update 2001.11. 5
Translated Amino Acid sequence
QVNKKDITTEYLNSKKIDRELKQESTTLQPLKLLLLGXGECXXSTIFKQXISFQXEXTKK
---

---XIFKXVKRXIEN*xxnqxhyxh*nyyy*vvvnvvnqpfsnksfhskmkqlkknihhh
lim*lkiyf*if*qqq


Translated Amino Acid sequence (All Frames)
Frame A:
tsk*kryynrifk**kd**riktrinnittieiiiirxw*mxxinhfqtnxfipx*xn*k
---

---axylnx*kx**rikxxixnitxieiiiir*wxmw*inhfqtnhfipr*sn*kriytt
i*lcn*kyifkyfnsnk

Frame B:
QVNKKDITTEYLNSKKIDRELKQESTTLQPLKLLLLGXGECXXSTIFKQXISFQXEXTKK
---

---xni*ixkkxdrelxxxsxtlxplkllllgsgxcgkstifkqiisfqdeatkkeytpp
sdyvikniflniltats

Frame C:
k*ikkilqqni*ivkrlien*nknqqhynh*nyyy*vvvnvxxqpfsnkxfhsxmxqlk-
--

---XIFKXVKRXIEN*xxnqxhyxh*nyyy*vvvnvvnqpfsnksfhskmkqlkknihhh
lim*lkiyf*if*qqq

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC0564 (FC-IC0564Q) /CSM/FC-IC/FC-IC0564Q.Seq.d/ 666 0.0
FC-BL01 (FC-BL01Q) /CSM/FC/FC-BL/FC-BL01Q.Seq.d/ 377 e-104
FC-BJ21 (FC-BJ21Q) /CSM/FC/FC-BJ/FC-BJ21Q.Seq.d/ 377 e-104
FC-489 (FC-489Q) /CSM/CG/CG-FC/FC-489Q.Seq.d/ 377 e-104
CHA730 (CHA730Q) /CSM/CH/CHA7-B/CHA730Q.Seq.d/ 58 1e-07
SSB349 (SSB349Q) /CSM/SS/SSB3-C/SSB349Q.Seq.d/ 50 3e-05
FCL-AC11 (FCL-AC11Q) /CSM/FCL/FCL-AC/FCL-AC11Q.Seq.d/ 50 3e-05
SSF589 (SSF589Q) /CSM/SS/SSF5-D/SSF589Q.Seq.d/ 42 0.007
CHJ308 (CHJ308Q) /CSM/CH/CHJ3-A/CHJ308Q.Seq.d/ 42 0.007
CHB567 (CHB567Q) /CSM/CH/CHB5-C/CHB567Q.Seq.d/ 42 0.007

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 38 9e-10 13
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 34 1e-09 12
AL844507|AL844507.1 Plasmodium falciparum chromosome 8. 38 9e-09 15
AL034557|AL034557.8 Plasmodium falciparum MAL4P1. 42 1e-08 13
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 36 1e-08 15
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 38 2e-08 11
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 40 6e-08 9
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 36 1e-07 11
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4. 36 1e-07 11
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 34 4e-07 12
dna update 2003.12.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54VG1) RecName: Full=Guanine nucleotide-binding protein alpha-... 102 3e-21
(O04279) RecName: Full=Guanine nucleotide-binding protein alpha-... 33 3.0
AF533439_1(AF533439|pid:none) Pisum sativum G protein alpha II s... 33 3.0
AF533438_1(AF533438|pid:none) Pisum sativum G protein alpha II s... 33 3.0
(Q40224) RecName: Full=Guanine nucleotide-binding protein alpha-... 32 6.6
(P49082) RecName: Full=Guanine nucleotide-binding protein alpha-... 32 8.6
CP000382_559(CP000382|pid:none) Clostridium novyi NT, complete g... 32 8.6
AB066592_1(AB066592|pid:none) Nicotiana tabacum NtGA1 gene for h... 32 8.6
AB234091_1(AB234091|pid:none) Phaseolus lunatus PlGPA2 mRNA for ... 32 8.6
AF249742_1(AF249742|pid:none) Nicotiana tabacum heterotrimeric G... 32 8.6
protein update 2009. 1. 4
PSORT

psg: 0.49 gvh: 0.69 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
20.0 %: mitochondrial
16.0 %: nuclear
8.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for FC-IC0564 is cyt

5' end seq. ID FC-IC0564F
5' end seq.
>FC-IC0564F.Seq
ACAAGTAAATAAAAAAGATATTACAACAGAATATTTAAATAGTAAAAAGATTGATAGAGA
ATTAAAACAAGAATCAACAACATTACAACCATTGAAATTATTATTATTAGGTNGTGGTGA
ATGTGNTNNATCAACCATTTTCAAACAAATNATTTCATTCCAANATGAANCAACTAAAAA
ANNNNNNNNNN
Length of 5' end seq. 191
3' end seq. ID FC-IC0564Z
3' end seq.
>FC-IC0564Z.Seq
NNNNNNNNNNGCANAATATTTAAATANGTAAAAAGANTGATAGAGAATTAAANCNANAAT
CAANAACATTACANCCATTGAAATTATTATTATTAGGTAGTGGTNAATGTGGTAAATCAA
CCATTTTCAAACAAATCATTTCATTCCAAGATGAAGCAACTAAAAAAGAATATACACCAC
CATCTGATTATGTAATTAAAAATATATTTTTAAATATTTTAACAGCAACAAGT
Length of 3' end seq. 233
Connected seq. ID FC-IC0564P
Connected seq.
>FC-IC0564P.Seq
ACAAGTAAATAAAAAAGATATTACAACAGAATATTTAAATAGTAAAAAGATTGATAGAGA
ATTAAAACAAGAATCAACAACATTACAACCATTGAAATTATTATTATTAGGTNGTGGTGA
ATGTGNTNNATCAACCATTTTCAAACAAATNATTTCATTCCAANATGAANCAACTAAAAA
A----------GCANAATATTTAAATANGTAAAAAGANTGATAGAGAATTAAANCNANAA
TCAANAACATTACANCCATTGAAATTATTATTATTAGGTAGTGGTNAATGTGGTAAATCA
ACCATTTTCAAACAAATCATTTCATTCCAAGATGAAGCAACTAAAAAAGAATATACACCA
CCATCTGATTATGTAATTAAAAATATATTTTTAAATATTTTAACAGCAACAAGT
Length of connected seq. 404
Full length Seq ID -
Full length Seq. -
Length of full length seq. -