>FC-IC0538 (FC-IC0538Q) /CSM/FC-IC/FC-IC0538Q.Seq.d/
CTTTATGCTACCGGTGCAAAAAGTGTTCTACATTGGACTGGAGTATTTAATGAGTTAGTA
CCATTACAGAATTGACCAAATGGACATTGACCATCGTTAGAACAAATAACGTGTGGTTTC
AATGAGCAAATCTCTTCATTACATGTTAAACCATTACCACATTGGTAGTCTGAATTACAA
CTTTCACCAAAACCTAAATAATCTGGCATAGCACAAGTTTGTAAATTACCTTTGGTGGTT
GTAACAGAACGACATGCGAATGGTTCTGCACATTCTGTGAATGGGGNGCCACAAGTTTCT
CCTAAACCACTTAATTTAG

lyatgaksvlhwtgvfnelvplqn*pngh*psleqitcgfneqisslhvkplphw*selq
lspkpk*SGIAQVCKLPLVVVTERHANGSAHSVNGXPQVSPKPLNL

Frame A:
lyatgaksvlhwtgvfnelvplqn*pngh*psleqitcgfneqisslhvkplphw*selq
lspkpk*SGIAQVCKLPLVVVTERHANGSAHSVNGXPQVSPKPLNL


Frame B:
fmlpvqkvfyigleylms*yhyridqmdidhr*nk*rvvsmskslhymlnhyhigslnyn
fhqnlnnla*hkfvnylwwl*qndmrmvlhil*mgxhkfllnhli*


Frame C:
lcyrckkcstldwsi**vstiteltkwtltivrtnnvwfq*anlfitc*tittlvv*itt
ftkt*iiwhstsl*itfggcnrttcewfctfcewgatsfs*tt*f

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0538 (FC-IC0538Q) /CSM/FC-IC/FC-IC0538Q.Seq.d/                   626   e-179
VFM235 (VFM235Q) /CSM/VF/VFM2-B/VFM235Q.Seq.d/                        581   e-165
SLC529 (SLC529Q) /CSM/SL/SLC5-B/SLC529Q.Seq.d/                        577   e-164
FC-BI21 (FC-BI21Q) /CSM/FC/FC-BI/FC-BI21Q.Seq.d/                      523   e-148
FC-IC1758 (FC-IC1758Q) /CSM/FC-IC/FC-IC1758Q.Seq.d/                   509   e-144
FC-IC1685 (FC-IC1685Q) /CSM/FC-IC/FC-IC1685Q.Seq.d/                   509   e-144
FC-IC1502 (FC-IC1502Q) /CSM/FC-IC/FC-IC1502Q.Seq.d/                   509   e-144
FC-IC1367 (FC-IC1367Q) /CSM/FC-IC/FC-IC1367Q.Seq.d/                   509   e-144
FC-IC1366 (FC-IC1366Q) /CSM/FC-IC/FC-IC1366Q.Seq.d/                   509   e-144
FC-IC1304 (FC-IC1304Q) /CSM/FC-IC/FC-IC1304Q.Seq.d/                   509   e-144

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB079253|AB079253.1 Dictyostelium discoideum Dd-gdcA mRNA, complete cds.   589   e-165  1
AB079606|AB079606.1 Dictyostelium discoideum gene for gp64-like protein, complete cds.   589   e-165  1
AB022216|AB022216.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGD8.    42   0.29   3
BW184756|BW184756.1 Ciona intestinalis cDNA, clone:rciht030h24, 3' end, single read.    34   0.89   2
AV839321|AV839321.1 Ciona intestinalis cDNA, clone:rciad02i09, 3' end, single read.    34   0.92   2
BW167829|BW167829.1 Ciona intestinalis cDNA, clone:rcinc016p13, 3' end, single read.    34   0.96   2
AC005167|AC005167.3 Arabidopsis thaliana chromosome 2 clone F12A24 map mi398, complete sequence.    36   1.6    4
AC068099|AC068099.3 Homo sapiens clone RP11-474F16, LOW-PASS SEQUENCE SAMPLING.    36   2.5    2
AC140804|AC140804.3 Homo sapiens clone CTD-3195J24, WORKING DRAFT SEQUENCE, 31 unordered pieces.    34   3.7    3
AC108532|AC108532.6 Rattus norvegicus clone CH230-91F12, WORKING DRAFT SEQUENCE, 2 unordered pieces.    36   6.1    3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB079253_1(AB079253|pid:none) Dictyostelium discoideum Dd-gdcA m...   223   2e-57
(Q52085) RecName: Full=Cell-cell adhesion glycoprotein 64;      ...    49   5e-05
S47645(S47645) tMDC I protein - crab-eating macaque  &X76637_1(X...    41   0.011
AP007166_483(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    40   0.026
T16840(T16840)hypothetical protein T10E10.4 - Caenorhabditis ele...    39   0.057
AP007166_484(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    39   0.057
CP001131_3388(CP001131|pid:none) Anaeromyxobacter sp. K, complet...    39   0.057
CP001359_3451(CP001359|pid:none) Anaeromyxobacter dehalogenans 2...    39   0.057
U39644_2(U39644|pid:none) Caenorhabditis elegans cosmid T10E10, ...    39   0.057
EF596889_1(EF596889|pid:none) Drosophila simulans strain simB MD...    39   0.074

 psg: 0.82  gvh: 0.47  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for FC-IC0538 is cyt

>FC-IC0538F.Seq
ACTAAATTAAGTGGTTTANGAGAAACTTGNGGCACCCCATTCACAGCAATGTGCANAACC
ATNTCNCATGNTNNTCCTGTTACAACCACCAANGGTAANTTACAAACTTNNNNNNNNNN

>FC-IC0538Z.Seq
NNNNNNNNNNCAACCACCAAAGGTTATTTGCTTNACNTGTGCTATGCCAGATTATTTAGG
TTTTGGTGAAAGTTGTAATTCNGNCTACCAATGTGGTAATGGTTTCACATGTAATGANTA
GATTTGCNCATTNTAACCACNNGTTATTTGTTNTACCAATGGTCAATGTCCATTGGGTCA
ATTCTGNAATGGAGCCCCCCNGCNCGGCCGCNNCTAAGCCGAATTCCAGCACACTGGCGG
CCGTTACTAGGGATCCGAGACTCGGTACCAAGCTTGGCG

>FC-IC0538P.Seq
ACTAAATTAAGTGGTTTANGAGAAACTTGNGGCACCCCATTCACAGCAATGTGCANAACC
ATNTCNCATGNTNNTCCTGTTACAACCACCAANGGTAANTTACAAACTT----------C
AACCACCAAAGGTTATTTGCTTNACNTGTGCTATGCCAGATTATTTAGGTTTTGGTGAAA
GTTGTAATTCNGNCTACCAATGTGGTAATGGTTTCACATGTAATGANTAGATTTGCNCAT
TNTAACCACNNGTTATTTGTTNTACCAATGGTCAATGTCCATTGGGTCAATTCTGNAATG
GAGCCCCCCNGCNCGGCCGCNNCTAAGCCGAATTCCAGCACACTGGCGGCCGTTACTAGG
GATCCGAGACTCGGTACCAAGCTTGGCG

>FC-IC0538E.Seq
CTTTATGCTACCGGTGCAAAAAGTGTTCTACATTGGACTGGAGTATTTAATGAGTTAGTA
CCATTACAGAATTGACCAAATGGACATTGACCATCGTTAGAACAAATAACGTGTGGTTTC
AATGAGCAAATCTCTTCATTACATGTTAAACCATTACCACATTGGTAGTCTGAATTACAA
CTTTCACCAAAACCTAAATAATCTGGCATAGCACAAGTTTGTAAATTACCTTTGGTGGTT
GTAACAGAACGACATGCGAATGGTTCTGCACATTCTGTGAATGGGGNGCCACAAGTTTCT
CCTAAACCACTTAATTTAGN