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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0522
Library FC-IC
(Link to library)
Clone ID FC-IC0522
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U03376-1
Original site URL
Representative seq. ID FC-IC0522E
(Link to Original site)
Representative DNA sequence 
>FC-IC0522 (FC-IC0522Q) /CSM/FC-IC/FC-IC0522Q.Seq.d/
ACTGAATTAGCTGACCAAGATAAAACAAATTTAAAATGTGATAAAAAATTAGTAGTTTCA
CTTTACATAGATTCACAAAAAGAAAATTCAGAAACATTTAATTTTCAAGTTAGTGAAATT
AAAGATGAAAATGGTAAATTAAAAACATTAGTTATACCAATTTCAGTAAAATTTAAAAAA
TCAGAAACATTTATAAATTATCCATTAGTTTATGT
sequence update 2001. 6.12
Translated Amino Acid sequence 
TELADQDKTNLKCDKKLVVSLYIDSQKENSETFNFQVSEIKDENGKLKTLVIPISVKFKK
SETFINYPLVY
Translated Amino Acid sequence (All Frames) 
Frame A:
TELADQDKTNLKCDKKLVVSLYIDSQKENSETFNFQVSEIKDENGKLKTLVIPISVKFKK
SETFINYPLVY


Frame B:
ln*ltkikqi*nvikn**fhft*ihkkkiqkhlifklvklkmkmvn*kh*lyqfq*nlkn
qkhl*iih*fm


Frame C:
*is*pr*nkfkm**kissftlhrftkrkfrni*fss**n*r*kw*iknisytnfski*ki
rniyklsislc
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0522 (FC-IC0522Q) /CSM/FC-IC/FC-IC0522Q.Seq.d/                   426   e-119
SHL450 (SHL450Q) /CSM/SH/SHL4-C/SHL450Q.Seq.d/                         40   0.013
SHL445 (SHL445Q) /CSM/SH/SHL4-B/SHL445Q.Seq.d/                         40   0.013
SHC183 (SHC183Q) /CSM/SH/SHC1-D/SHC183Q.Seq.d/                         40   0.013
SFF394 (SFF394Q) /CSM/SF/SFF3-D/SFF394Q.Seq.d/                         40   0.013
SFA633 (SFA633Q) /CSM/SF/SFA6-B/SFA633Q.Seq.d/                         40   0.013
CHQ343 (CHQ343Q) /CSM/CH/CHQ3-B/CHQ343Q.Seq.d/                         40   0.013
CHO516 (CHO516Q) /CSM/CH/CHO5-A/CHO516Q.Seq.d/                         40   0.013
CHL678 (CHL678Q) /CSM/CH/CHL6-D/CHL678Q.Seq.d/                         40   0.013
CHJ670 (CHJ670Q) /CSM/CH/CHJ6-C/CHJ670Q.Seq.d/                         40   0.013
own update 2002.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.   266   e-107  9
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   159   3e-49  7
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    42   3e-08  16
U30821|U30821.1 Cyanophora paradoxa cyanelle, complete genome.     34   1e-07  9
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            36   4e-06  14
AX602210|AX602210.1 Sequence 139 from Patent WO02092818.           46   1e-05  6
AP003362|AP003362.2 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 5/9.    38   1e-05  7
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    32   3e-05  10
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   3e-05  9
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    30   4e-05  11
dna update 2003.12.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116979_35(AC116979|pid:none) Dictyostelium discoideum chromoso...   142   3e-33
AB206812_1(AB206812|pid:none) Physarum polycephalum GCS1 mRNA fo...    44   0.002
AC116963_45(AC116963|pid:none) Dictyostelium discoideum chromoso...    39   0.076
AC136522_14(AC136522|pid:none) Oryza sativa (japonica cultivar-g...    34   1.9
AM424065_1(AM424065|pid:none) Vitis vinifera contig VV78X125552....    33   2.4
CP000881_32(CP000881|pid:none) Hemiselmis andersenii chromosome ...    32   5.4
AE014133_428(AE014133|pid:none) Streptococcus mutans UA159, comp...    32   9.2
protein update 2009. 2.28
PSORT 

 psg: 0.75  gvh: 0.27  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for FC-IC0522 is nuc
5' end seq. ID FC-IC0522F
5' end seq. 
>FC-IC0522F.Seq
ACTGAATTAGCTGACCAAGATAAAACAAATTTAAAATGTGATAAAAAATTAGTAGTTTCA
CTTTACATAGATTCACAAAAAGAAAATTCAGAAACATTTAATTTTCAAGTTAGTGAAATT
AAAGATGAAAATGGTAAATTAAAAACATTAGTTATACCAATTTCAGTAAAATTTAAAAAA
TCAGAAACATTTATAAATTATCCATTAGTTTATGT----------
Length of 5' end seq. 215
3' end seq. ID FC-IC0522Z
3' end seq. 
>FC-IC0522Z.Seq
----------ACTGAATTAGCTGACCAAGATAAAACAAATTTAAAATGTGATAAAAAATT
AGTAGTTTCACTTTACATAGATTCACAAAAAGAAAATTCAGAAACATTTAATTTTCAAGT
TAGTGAAATTAAAGATGAAAATGGTAAATTAAAAACATTAGTTATACCAATTTCAGTAAA
ATTTAAAAAATCAGAAACATTTATAAATTATCCATTAGTTTATGT
Length of 3' end seq. 215
Connected seq. ID FC-IC0522P
Connected seq. 
>FC-IC0522P.Seq
ACTGAATTAGCTGACCAAGATAAAACAAATTTAAAATGTGATAAAAAATTAGTAGTTTCA
CTTTACATAGATTCACAAAAAGAAAATTCAGAAACATTTAATTTTCAAGTTAGTGAAATT
AAAGATGAAAATGGTAAATTAAAAACATTAGTTATACCAATTTCAGTAAAATTTAAAAAA
TCAGAAACATTTATAAATTATCCATTAGTTTATGT----------ACTGAATTAGCTGAC
CAAGATAAAACAAATTTAAAATGTGATAAAAAATTAGTAGTTTCACTTTACATAGATTCA
CAAAAAGAAAATTCAGAAACATTTAATTTTCAAGTTAGTGAAATTAAAGATGAAAATGGT
AAATTAAAAACATTAGTTATACCAATTTCAGTAAAATTTAAAAAATCAGAAACATTTATA
AATTATCCATTAGTTTATGT
Length of connected seq. 430
Full length Seq ID FC-IC0522E
Full length Seq. 
>FC-IC0522E.Seq
ACTGAATTAGCTGACCAAGATAAAACAAATTTAAAATGTGATAAAAAATTAGTAGTTTCA
CTTTACATAGATTCACAAAAAGAAAATTCAGAAACATTTAATTTTCAAGTTAGTGAAATT
AAAGATGAAAATGGTAAATTAAAAACATTAGTTATACCAATTTCAGTAAAATTTAAAAAA
TCAGAAACATTTATAAATTATCCATTAGTTTATGT
Length of full length seq. 215