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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0491
Library FC-IC
(Link to library)
Clone ID FC-IC0491
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12373-1
Original site URL
Representative seq. ID FC-IC0491E
(Link to Original site)
Representative DNA sequence 
>FC-IC0491 (FC-IC0491Q) /CSM/FC-IC/FC-IC0491Q.Seq.d/
ACTCCAGAATGGGAGGGTATTGATTGTTCAAATAAAACTTGTCCCAATAATTGTAATGGC
GAAAATGGTGAATGCAATATTTTAACTGGTTTATGTTCATGCACTCCAGAATGGGAAGGT
ATTGATTGTTCAAATAGAACTTGCCCAAATAATTGTAGTGGTGAAAATGGTCAATGTGAT
GTTCTAACTGGTTTATGTTCATGTTTAAATGGATTTGAAGGTATTGATTGTTCTAATAAA
ACATGTCCAAATAATTGTTCAAATAATGGTCAATGTGATAAATCAAATGGTAAATGTTTC
TGTTATTCGAATTGGGGAGGAAGTGATTGTAGTATTGTAACCACACGAAAACCAGATCTT
CCACCACCAATTATCGATGAAAATGGTCAAACTATTTTCCCAGGTATTAATTTAAATATC
AGTGTTTCAATTACTCATTTACGTGAAATTGATATTAATGATGAATCAGTTAAAGTTTTA
AGATTAAGAGATATTGTTTGGGTTGAAAGATCAAATATTTCATCAAATTATTTCTATTAT
AAAGGT
sequence update 2001. 5.31
Translated Amino Acid sequence 
TPEWEGIDCSNKTCPNNCNGENGECNILTGLCSCTPEWEGIDCSNRTCPNNCSGENGQCD
VLTGLCSCLNGFEGIDCSNKTCPNNCSNNGQCDKSNGKCFCYSNWGGSDCSIVTTRKPDL
PPPIIDENGQTIFPGINLNISVSITHLREIDINDESVKVLRLRDIVWVERSNISSNYFYY
KG
Translated Amino Acid sequence (All Frames) 
Frame A:
TPEWEGIDCSNKTCPNNCNGENGECNILTGLCSCTPEWEGIDCSNRTCPNNCSGENGQCD
VLTGLCSCLNGFEGIDCSNKTCPNNCSNNGQCDKSNGKCFCYSNWGGSDCSIVTTRKPDL
PPPIIDENGQTIFPGINLNISVSITHLREIDINDESVKVLRLRDIVWVERSNISSNYFYY
KG


Frame B:
lqngrvlivqiklvpiivmakmvnaif*lvyvhalqngkvlivqielaqiivvvkmvnvm
f*lvyvhv*mdlkvlivlikhvqiivqimvnvinqmvnvsvirigeevivvl*phenqif
hhqlsmkmvklfsqvli*isvfqlliyvklilmmnqlkf*d*eilfglkdqifhqiisii
k


Frame C:
srmggy*lfk*nlsq*l*wrkw*mqyfnwfmfmhsrmgry*lfk*nlpk*l*w*kwsm*c
snwfmfmfkwi*ry*lf**nmsk*lfk*wsm**ikw*mfllfelgrk*l*ycnhtktrss
ttnyr*kwsnyfpry*fkyqcfnysft*n*y***is*sfkikryclg*kikyfiklfll*
r
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC1285 (FC-IC1285Q) /CSM/FC-IC/FC-IC1285Q.Seq.d/                  1082   0.0
FC-IC0491 (FC-IC0491Q) /CSM/FC-IC/FC-IC0491Q.Seq.d/                  1082   0.0
VHJ635 (VHJ635Q) /CSM/VH/VHJ6-B/VHJ635Q.Seq.d/                        285   3e-76
VHA242 (VHA242Q) /CSM/VH/VHA2-B/VHA242Q.Seq.d/                        244   1e-63
VHN861 (VHN861Q) /CSM/VH/VHN8-C/VHN861Q.Seq.d/                        206   3e-52
VHL375 (VHL375Q) /CSM/VH/VHL3-D/VHL375Q.Seq.d/                         84   3e-15
VHC609 (VHC609Q) /CSM/VH/VHC6-A/VHC609Q.Seq.d/                         82   1e-14
VHL111 (VHL111Q) /CSM/VH/VHL1-A/VHL111Q.Seq.d/                         64   2e-09
VHL269 (VHL269Q) /CSM/VH/VHL2-C/VHL269Q.Seq.d/                         60   4e-08
VSA871 (VSA871Q) /CSM/VS/VSA8-C/VSA871Q.Seq.d/                         38   0.14
own update 2003. 5.28
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    50   2e-07  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   1e-04  17
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36   0.002  11
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   0.005  13
AC010867|AC010867.8 Homo sapiens chromosome 15 clone RP11-390M11 map 15q21.3, complete sequence.    36   0.006  8
AC108586|AC108586.5 Rattus norvegicus clone CH230-260N5, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    42   0.012  5
AC121396|AC121396.4 Rattus norvegicus clone CH230-33D8, WORKING DRAFT SEQUENCE, 1 ordered piece.    42   0.013  6
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    50   0.032  11
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    32   0.038  11
AC116967|AC116967.2 Dictyostelium discoideum chromosome 2 map 5481549-5500786 strain AX4, complete sequence.    44   0.12   3
dna update 2003.12.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM231718_1(AM231718|pid:none) Gallus gallus mRNA for tenascin-W ...   104   1e-21
BC071284_1(BC071284|pid:none) Danio rerio tenascin W, mRNA (cDNA...    99   9e-20
BC163556_1(BC163556|pid:none) Danio rerio tenascin C, mRNA (cDNA...    96   5e-19
BX004856_1(BX004856|pid:none) Zebrafish DNA sequence from clone ...    94   2e-18
DQ096731_1(DQ096731|pid:none) Danio rerio tenascin-C (TNC) mRNA,...    94   2e-18
X08030_1(X08030|pid:none) Chicken mRNA fragment for tenascin (cT...    94   2e-18
AB010266_2(AB010266|pid:none) Mus musculus Creb-rp, Tnx, Cyp21 g...    93   4e-18
AJ580920_1(AJ580920|pid:none) Mus musculus mRNA for tenascin-W p...    93   5e-18
(Q80Z71) RecName: Full=Tenascin-N;          Short=TN-N; Flags: P...    93   5e-18
BC138335_1(BC138335|pid:none) Mus musculus tenascin N, mRNA (cDN...    93   5e-18
protein update 2009. 7. 1
PSORT 

 psg: 0.75  gvh: 0.43  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for FC-IC0491 is cyt
5' end seq. ID FC-IC0491F
5' end seq. 
>FC-IC0491F.Seq
ACCTTTATAATAGAAANAATTNGATGNGGTATTNNATCTTTCAACACCAAACAATATCTT
CTTAATCCTTAAAACTTTAACNGCAGNCATGNATTTAATATNAATGNANACGTAAATGAC
CCAATCCNAANCACTTGTATNTTTNAANTTANATACCTGGGAAAATAGCCCGANNNTTNN
CATCNNTANTTGGNGGAGGAAGATTTGGTTTTACCCGTGGAAACANCCCTNCAATCCCTT
GGCTCCCGNGGNCGAANCACAGAANCATTGGACCATTCCNTTTATNACATNCNACCATTC
NTTNAACAATTATTTGNACATGTTTGATTAAAACAANNAATACCTTNAAATCCATTTAAA
CATGAACATAAACCAGTTAGAACATCACATTGACCATTTTCACCACTACAATTATTTGGG
CAAGTTCTATTTGAACAATCAATACCTTCCCATTCTGGAGTGCATGAACATAAACCAGTT
AAAATATTGCATTCACCATTTTCGCCATTACAATTATTGGGACANNNNNNNNNN
Length of 5' end seq. 534
3' end seq. ID FC-IC0491Z
3' end seq. 
>FC-IC0491Z.Seq
NNNNNNNNNNACCTTTATAATAGAAATAATTTGATGAAATATTTGATCTTTCAACCCAAA
CAATATCTCTTAATCTTAAAACTTTAACTGATTCATCATTAATATCAATTTCACGTAAAT
GAGTAATTGAAACACTGATATTTAAATTAATACCTGGGAAAATAGTTTGACCATTTTCAT
CGATAATTGGTGGTGGAAGATACTGGTNNTCGTGTGGTTACAATANNGCNATCACTTCCT
CCCCAATTNGAATAGCAGNAACATNNACCATTTGATTGATCNCATTGACCATTATNNNAA
CNNTTNTTTGNANANGATATATTNGATCAATCAGATACNNATAAATCCATTTACACAGGC
ANATCCANCAGTTNGANNNTCNCANGNTNCATTTNCANGTTTTTCATATTACTTTGGNNN
ANTTAAATTTNNACNATCATANACCTTCACCACTCTGNAGTGNATGNGCATCAACCAGNN
TGNATNTGGCNTTCACCNTTTTCGCCANCACNNTTANNGGGNCNAGTTTCANTTGANCAA
TCAATGCCCCCCCGTTGNTGGAGT
Length of 3' end seq. 564
Connected seq. ID FC-IC0491P
Connected seq. 
>FC-IC0491P.Seq
ACCTTTATAATAGAAANAATTNGATGNGGTATTNNATCTTTCAACACCAAACAATATCTT
CTTAATCCTTAAAACTTTAACNGCAGNCATGNATTTAATATNAATGNANACGTAAATGAC
CCAATCCNAANCACTTGTATNTTTNAANTTANATACCTGGGAAAATAGCCCGANNNTTNN
CATCNNTANTTGGNGGAGGAAGATTTGGTTTTACCCGTGGAAACANCCCTNCAATCCCTT
GGCTCCCGNGGNCGAANCACAGAANCATTGGACCATTCCNTTTATNACATNCNACCATTC
NTTNAACAATTATTTGNACATGTTTGATTAAAACAANNAATACCTTNAAATCCATTTAAA
CATGAACATAAACCAGTTAGAACATCACATTGACCATTTTCACCACTACAATTATTTGGG
CAAGTTCTATTTGAACAATCAATACCTTCCCATTCTGGAGTGCATGAACATAAACCAGTT
AAAATATTGCATTCACCATTTTCGCCATTACAATTATTGGGACA----------ACCTTT
ATAATAGAAATAATTTGATGAAATATTTGATCTTTCAACCCAAACAATATCTCTTAATCT
TAAAACTTTAACTGATTCATCATTAATATCAATTTCACGTAAATGAGTAATTGAAACACT
GATATTTAAATTAATACCTGGGAAAATAGTTTGACCATTTTCATCGATAATTGGTGGTGG
AAGATACTGGTNNTCGTGTGGTTACAATANNGCNATCACTTCCTCCCCAATTNGAATAGC
AGNAACATNNACCATTTGATTGATCNCATTGACCATTATNNNAACNNTTNTTTGNANANG
ATATATTNGATCAATCAGATACNNATAAATCCATTTACACAGGCANATCCANCAGTTNGA
NNNTCNCANGNTNCATTTNCANGTTTTTCATATTACTTTGGNNNANTTAAATTTNNACNA
TCATANACCTTCACCACTCTGNAGTGNATGNGCATCAACCAGNNTGNATNTGGCNTTCAC
CNTTTTCGCCANCACNNTTANNGGGNCNAGTTTCANTTGANCAATCAATGCCCCCCCGTT
GNTGGAGT
Length of connected seq. 1078
Full length Seq ID FC-IC0491E
Full length Seq. 
>FC-IC0491E.Seq
ACTCCAGAATGGGAGGGTATTGATTGTTCAAATAAAACTTGTCCCAATAATTGTAATGGC
GAAAATGGTGAATGCAATATTTTAACTGGTTTATGTTCATGCACTCCAGAATGGGAAGGT
ATTGATTGTTCAAATAGAACTTGCCCAAATAATTGTAGTGGTGAAAATGGTCAATGTGAT
GTTCTAACTGGTTTATGTTCATGTTTAAATGGATTTGAAGGTATTGATTGTTCTAATAAA
ACATGTCCAAATAATTGTTCAAATAATGGTCAATGTGATAAATCAAATGGTAAATGTTTC
TGTTATTCGAATTGGGGAGGAAGTGATTGTAGTATTGTAACCACACGAAAACCAGATCTT
CCACCACCAATTATCGATGAAAATGGTCAAACTATTTTCCCAGGTATTAATTTAAATATC
AGTGTTTCAATTACTCATTTACGTGAAATTGATATTAATGATGAATCAGTTAAAGTTTTA
AGATTAAGAGATATTGTTTGGGTTGAAAGATCAAATATTTCATCAAATTATTTCTATTAT
AAAGGT
Length of full length seq. 546