FC-IC0436
Library FC-IC
(Link to library)
Clone ID FC-IC0436
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID FC-IC0436F
(Link to Original site)
Representative DNA sequence
>FC-IC0436 (FC-IC0436Q) /CSM/FC-IC/FC-IC0436Q.Seq.d/
GATCTTNTTCTCCTTCGAGCTTCACCAATCTGCCAAGATGGTGACGCCTCTCATCAAGCG
CGATGTCGTCAAGAAGCGGGTCAAGAAGTTCAAGCGCATGCAGTCTGACCGCAAGATTTG
CGTGAAGACGAATTGGAGGAGGCCAAAGGGTATCGATTCTAGAGTTCGTCGTAAGTTCAA
AGGCACTACTTTGATGCCCAACATTGGTTACGGCTCAAACAAGAAGACGAGACATGTGCT
CCCAAGTGGATTTGTGAAGTTTTTGGTTCACAATGTGAAGGACGTGGAGCTTCTGTTGAT
GCACAACAGAAAATACAGCGCTGAAATCGCACATAATGTATCCACCCTGAAGAGGAAGGC
TATCGTGGAGCGTGCAGCCCAGTTGAACATTGCATTGACCAACGGAAGCGCCCGCCTTCG
CAGXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
IXFSFELHQSAKMVTPLIKRDVVKKRVKKFKRMQSDRKICVKTNWRRPKGIDSRVRRKFK
GTTLMPNIGYGSNKKTRHVLPSGFVKFLVHNVKDVELLLMHNRKYSAEIAHNVSTLKRKA
IVERAAQLNIALTNGSARLR---


Translated Amino Acid sequence (All Frames)
Frame A:
dlxllraspicqdgdashqarcrqeagqevqahav*pqdlredeleeakgyrf*sss*vq
rhyfdaqhwlrlkqedetcapkwicevfgsqcegrgasvdaqqkiqr*nrt*cihpeeeg
yrgacspvehcidqrkrpps---


Frame B:
IXFSFELHQSAKMVTPLIKRDVVKKRVKKFKRMQSDRKICVKTNWRRPKGIDSRVRRKFK
GTTLMPNIGYGSNKKTRHVLPSGFVKFLVHNVKDVELLLMHNRKYSAEIAHNVSTLKRKA
IVERAAQLNIALTNGSARLR---


Frame C:
sxspssftnlprw*rlsssamssrsgsrsssacsltarfa*rrigggqrvsilefvvssk
all*cptlvtaqtrrrdmcsqvdl*sfwftm*rtwsfc*cttentalkshimypp*rgrl
swsvqps*tlh*pteapafa---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC0436 (FC-IC0436Q) /CSM/FC-IC/FC-IC0436Q.Seq.d/ 833 0.0
VHQ261 (VHQ261Q) /CSM/VH/VHQ2-C/VHQ261Q.Seq.d/ 32 6.6
VHP271 (VHP271Q) /CSM/VH/VHP2-C/VHP271Q.Seq.d/ 32 6.6
VHO862 (VHO862Q) /CSM/VH/VHO8-C/VHO862Q.Seq.d/ 32 6.6
VHO660 (VHO660Q) /CSM/VH/VHO6-C/VHO660Q.Seq.d/ 32 6.6
VHO580 (VHO580Q) /CSM/VH/VHO5-D/VHO580Q.Seq.d/ 32 6.6
VHO537 (VHO537Q) /CSM/VH/VHO5-B/VHO537Q.Seq.d/ 32 6.6
VHO536 (VHO536Q) /CSM/VH/VHO5-B/VHO536Q.Seq.d/ 32 6.6
VHO377 (VHO377Q) /CSM/VH/VHO3-D/VHO377Q.Seq.d/ 32 6.6
VHN470 (VHN470Q) /CSM/VH/VHN4-C/VHN470Q.Seq.d/ 32 6.6

own update 2004. 7.22
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BJ161119|BJ161119.1 Physcomitrella patens subsp. patens cDNA clone:pph21c02, 5' end, single read. 833 0.0 1
BJ164566|BJ164566.1 Physcomitrella patens subsp. patens cDNA clone:pph21c02, 3' end, single read. 833 0.0 1
BJ191074|BJ191074.1 Physcomitrella patens subsp. patens cDNA clone:pphn12h04, 5' end, single read. 833 0.0 1
BJ610421|BJ610421.1 Physcomitrella patens subsp. patens cDNA clone:pphn12h04, 3' end, single read. 833 0.0 1
BJ164471|BJ164471.1 Physcomitrella patens subsp. patens cDNA clone:pph9n15, 5' end, single read. 833 0.0 1
BJ165401|BJ165401.1 Physcomitrella patens subsp. patens cDNA clone:pph4b18, 3' end, single read. 833 0.0 1
BJ173908|BJ173908.1 Physcomitrella patens subsp. patens cDNA clone:pphb10g04, 5' end, single read. 833 0.0 1
BJ157429|BJ157429.1 Physcomitrella patens subsp. patens cDNA clone:pph4b18, 5' end, single read. 833 0.0 1
BJ168165|BJ168165.1 Physcomitrella patens subsp. patens cDNA clone:pph17h22, 3' end, single read. 833 0.0 1
BJ173830|BJ173830.1 Physcomitrella patens subsp. patens cDNA clone:pph9n15, 3' end, single read. 833 0.0 1
dna update 2003.12.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF145555_1(EF145555|pid:none) Populus trichocarpa clone WS01126_... 178 6e-44
AC148239_23(AC148239|pid:none) Medicago truncatula clone mth2-5d... 178 6e-44
DQ122831_1(DQ122831|pid:none) Medicago sativa clone C3 ribosomal... 176 2e-43
EU284838_1(EU284838|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 174 6e-43
EU284839_1(EU284839|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 174 8e-43
EF146458_1(EF146458|pid:none) Populus trichocarpa clone WS0118_E... 173 1e-42
(P49211) RecName: Full=60S ribosomal protein L32-1; &AL110123_7... 171 7e-42
AF358665_1(AF358665|pid:none) Mercurialis annua ribosomal protei... 171 9e-42
EF082636_1(EF082636|pid:none) Picea sitchensis clone WS0282_B24 ... 170 1e-41
EU284843_1(EU284843|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 169 2e-41
protein update 2009. 5.21
PSORT

psg: 0.75 gvh: 0.27 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.13
nuc: 0.22 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
24.0 %: cytoplasmic
12.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: mitochondrial

>> prediction for FC-IC0436 is nuc

5' end seq. ID FC-IC0436F
5' end seq.
>FC-IC0436F.Seq
GATCTTNTTCTCCTTCGAGCTTCACCAATCTGCCAAGATGGTGACGCCTCTCATCAAGCG
CGATGTCGTCAAGAAGCGGGTCAAGAAGTTCAAGCGCATGCAGTCTGACCGCAAGATTTG
CGTGAAGACGAATTGGAGGAGGCCAAAGGGTATCGATTCTAGAGTTCGTCGTAAGTTCAA
AGGCACTACTTTGATGCCCAACATTGGTTACGGCTCAAACAAGAAGACGAGACATGTGCT
CCCAAGTGGATTTGTGAAGTTTTTGGTTCACAATGTGAAGGACGTGGAGCTTCTGTTGAT
GCACAACAGAAAATACAGCGCTGAAATCGCACATAATGTATCCACCCTGAAGAGGAAGGC
TATCGTGGAGCGTGCAGCCCAGTTGAACATTGCATTGACCAACGGAAGCGCCCGCCTTCG
CAG----------
Length of 5' end seq. 423
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -