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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0417
Library FC-IC
(Link to library)
Clone ID FC-IC0417
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03353-1
Original site URL
Representative seq. ID FC-IC0417F
(Link to Original site)
Representative DNA sequence 
>FC-IC0417 (FC-IC0417Q) /CSM/FC-IC/FC-IC0417Q.Seq.d/
CTACTTATTTCGTGTCTTGGAGTGGGGCTTTGCGATCGCGTTGTGAATTGGGCTGACTTG
GGGTCGTTTGGTTGTTGCGACCGTGATGGAAGCAACGGGGCTTTCTCTTTCCGGAGCTAG
GCAGTGTGCGCAACCATGGTCGCGTCGGATTGAGCACCANCACCGTGGCACACTTGGCTC
TCANAATTCTCTGTCTTGTCGTCAAAAGGTGGTGATGAAATTGGATATTGAATCAAGGTT
AAGCTGCTCTGTTCAGCACAGGGTATCTTNAGTACNTGCCAAGAGXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ylfrvlewgfaial*IGLTWGRLVVATVMEATGLSLSGARQCAQPWSRRIEHXHRGTLGS
XNSLSCRQKVVMKLDIESRLSCSVQHRVSXVXAK---
Translated Amino Acid sequence (All Frames) 
Frame A:
llisclgvglcdrvvnwadlgsfgccdrdgsngafsfrs*avcatmvasd*apxpwhtwl
sxfsvlsskggdeigy*ikvkllcsaqgixstcq---


Frame B:
ylfrvlewgfaial*IGLTWGRLVVATVMEATGLSLSGARQCAQPWSRRIEHXHRGTLGS
XNSLSCRQKVVMKLDIESRLSCSVQHRVSXVXAK---


Frame C:
tyfvswsgalrsrcelg*lgvvwllrp*wkqrgflfpelgsvrnhgrvglstxtvahlal
xilclvvkrw**nwilnqg*aalfstgylxyxpr---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0417 (FC-IC0417Q) /CSM/FC-IC/FC-IC0417Q.Seq.d/                   541   e-153
SSF881 (SSF881Q) /CSM/SS/SSF8-D/SSF881Q.Seq.d/                         38   0.071
SHJ644 (SHJ644Q) /CSM/SH/SHJ6-B/SHJ644Q.Seq.d/                         38   0.071
AHF149 (AHF149Q) /CSM/AH/AHF1-C/AHF149Q.Seq.d/                         38   0.071
AFA315 (AFA315Q) /CSM/AF/AFA3-A/AFA315Q.Seq.d/                         38   0.071
VHK313 (VHK313Q) /CSM/VH/VHK3-A/VHK313Q.Seq.d/                         34   1.1
VSH534 (VSH534Q) /CSM/VS/VSH5-B/VSH534Q.Seq.d/                         32   4.4
VSH529 (VSH529Q) /CSM/VS/VSH5-B/VSH529Q.Seq.d/                         32   4.4
VSA365 (VSA365Q) /CSM/VS/VSA3-C/VSA365Q.Seq.d/                         32   4.4
VHJ666 (VHJ666Q) /CSM/VH/VHJ6-C/VHJ666Q.Seq.d/                         32   4.4
own update 2002.10. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BJ164339|BJ164339.1 Physcomitrella patens subsp. patens cDNA clone:pph9h11, 5' end, single read.   541   e-150  1
BJ163308|BJ163308.1 Physcomitrella patens subsp. patens cDNA clone:pph35b06, 5' end, single read.   484   e-133  1
AC004801|AC004801.2 Homo sapiens 12 PAC RP1-228P16 (Roswell Park Cancer Institute Human PAC Library) complete sequence.    42   4.0    1
AC146619|AC146619.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0021B21, from chromosome 3, complete sequence.    30   7.0    2
AC127755|AC127755.3 Rattus norvegicus clone CH230-167I7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    40   16     1
AC137416|AC137416.1 Rattus norvegicus clone CH230-unknown, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    40   16     1
AC107292|AC107292.4 Rattus norvegicus clone CH230-190N10, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    40   16     1
AP006138|AP006138.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT37A17, TM0240.    40   16     1
AC107281|AC107281.4 Rattus norvegicus clone CH230-82A8, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    40   16     1
CC805524|CC805524.1 ZMMBBc0473F20r ZMMBBc Zea mays subsp. mays genomic clone ZMMBBc0473F20 3', genomic survey sequence.    40   16     1
dna update 2003.12.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL772146_1(AL772146|pid:none) Zebrafish DNA sequence from clone ...    35   0.60
CP000489_722(CP000489|pid:none) Paracoccus denitrificans PD1222 ...    32   6.6
protein update 2009. 1. 4
PSORT 

 psg: 0.84  gvh: 0.55  alm: 0.38  top: 0.40  tms: 0.00  mit: 0.35  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for FC-IC0417 is nuc
5' end seq. ID FC-IC0417F
5' end seq. 
>FC-IC0417F.Seq
CTACTTATTTCGTGTCTTGGAGTGGGGCTTTGCGATCGCGTTGTGAATTGGGCTGACTTG
GGGTCGTTTGGTTGTTGCGACCGTGATGGAAGCAACGGGGCTTTCTCTTTCCGGAGCTAG
GCAGTGTGCGCAACCATGGTCGCGTCGGATTGAGCACCANCACCGTGGCACACTTGGCTC
TCANAATTCTCTGTCTTGTCGTCAAAAGGTGGTGATGAAATTGGATATTGAATCAAGGTT
AAGCTGCTCTGTTCAGCACAGGGTATCTTNAGTACNTGCCAAGAG----------
Length of 5' end seq. 285
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -