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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0392
Library FC-IC
(Link to library)
Clone ID FC-IC0392
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16527-1
Original site URL
Representative seq. ID FC-IC0392E
(Link to Original site)
Representative DNA sequence 
>FC-IC0392 (FC-IC0392Q) /CSM/FC-IC/FC-IC0392Q.Seq.d/
ACCGGAGCGAGTGGCCCACATAACGAGGTTCCTTCACTGGATCGGTAGTTGCTGGGTGGC
GAGCTCCAAACCGCCACAGCCATTTGCTTTATTGCGAGCAATGGCACGAGTCACCGGATG
TAGCAAGCGCGTAAAAAACCTGTGCTACAAATTAATCGTGGAGCGTGCGCCGTCCTTTTC
TAGGTATGCATGCGCTCTCACACCCCAGGCGGCGACAGCAATGTCGGCTTTCTAGACGTG
TCAAAGCGACTAGGCCAATGCAATAGGTGACGGAGGAGCAATAAGGAGATCTGTTGGCAA
AGTGCTGATTTACTTTGTGGAGCATGGTTAAAGGCCAGATTTAACTATCTGTCAGCTAAC
AATGTAACATTTGATGAATCTTTTTAATTGGTAATAAAAGTGACGGGATCTAATCCTGTA
ATTTTGTGACCTCTTCAAAGGGAAACATTAACCAAACAATCAAAACAAAAAATAAGTTTT
GTAATTAATATGTAATAGTGATTAATATCATGATACGTGTTATCTACATGCTTAACTGGT
TGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTATAA
ATTCTTGT
sequence update 2001. 6.12
Translated Amino Acid sequence 
PERVAHITRFLHWIGSCWVASSKPPQPFALLRAMARVTGCSKRVKNLCYKLIVERAPSFS
RYACALTPQAATAMSAF*tcqsd*anaigdggairrsvgkvliyfvehg*rpdlticqlt
m*hlmnlfnw**k*rdlil*fcdlfkgkh*pnnqnkk*vl*licnsd*yhdtcylha*lv
dpasshmlvskikpcmskykfl
Translated Amino Acid sequence (All Frames) 
Frame A:
tgasgphnevpsldr*llggelqtataicfiasngtshrm*qarkkpvlqinrgacavlf
*vcmrshtpggdsnvgfldvskrlgqcnr*rrsnkeicwqsadllcgawlkarfnylsan
nvtfdesf*lvikvtgsnpvil*plqretltkqskqkisfvinm***lis*yvlstcltg
*scq*syaclkd*amhv*v*il


Frame B:
PERVAHITRFLHWIGSCWVASSKPPQPFALLRAMARVTGCSKRVKNLCYKLIVERAPSFS
RYACALTPQAATAMSAF*tcqsd*anaigdggairrsvgkvliyfvehg*rpdlticqlt
m*hlmnlfnw**k*rdlil*fcdlfkgkh*pnnqnkk*vl*licnsd*yhdtcylha*lv
dpasshmlvskikpcmskykfl


Frame C:
rsewpt*rgsftgsvvagwrapnrhshllyceqwhespdvasa*ktcatn*swsvrrpfl
gmhalshprrrqqcrlsrrvkatrpmq*vteeq*gdllakc*ftlwsmvkgqi*lsvs*q
cni**iflignksdgi*scnfvtsskgninqtiktknkfcn*yvivinimirviymlnwl
ilpvviclsqrlshaclsinsc
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0392 (FC-IC0392Q) /CSM/FC-IC/FC-IC0392Q.Seq.d/                  1205   0.0
FC-IC1075 (FC-IC1075Q) /CSM/FC-IC/FC-IC1075Q.Seq.d/                  1197   0.0
FC-IC1071 (FC-IC1071Q) /CSM/FC-IC/FC-IC1071Q.Seq.d/                  1197   0.0
FC-IC0770 (FC-IC0770Q) /CSM/FC-IC/FC-IC0770Q.Seq.d/                  1197   0.0
FC-IC0617 (FC-IC0617Q) /CSM/FC-IC/FC-IC0617Q.Seq.d/                  1146   0.0
VHG142 (VHG142Q) /CSM/VH/VHG1-B/VHG142Q.Seq.d/                       1076   0.0
VHK855 (VHK855Q) /CSM/VH/VHK8-C/VHK855Q.Seq.d/                        902   0.0
VHL415 (VHL415Q) /CSM/VH/VHL4-A/VHL415Q.Seq.d/                        829   0.0
FC-BL24 (FC-BL24Q) /CSM/FC/FC-BL/FC-BL24Q.Seq.d/                      716   0.0
FC-BL16 (FC-BL16Q) /CSM/FC/FC-BL/FC-BL16Q.Seq.d/                      710   0.0
own update 2002.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.  1197   0.0    1
X00601|X00601.1 Dictyostelium discoideum ribosomal RNA gene.      583   0.0    2
X00134|X00134.1 Dictyostelium discoideum 17S rRNA sequence.       151   1e-32  1
K02641|K02641.1 Slime mold (D.discoideum) 17S small subunit ribosomal RNA gene, complete coding sequence.   151   1e-32  1
AC121240|AC121240.18 Medicago truncatula clone mth1-51o19, WORKING DRAFT SEQUENCE, 12 unordered pieces.   117   3e-30  3
AF527756|AF527756.1 Schizocaryum dogieli 18S ribosomal RNA gene, partial sequence.   137   2e-28  1
AF175549|AF175549.1 Porphyra umbilicalis from Germany small subunit ribosomal RNA gene, partial sequence.   135   8e-28  1
AF175548|AF175548.1 Porphyra sp. Brest small subunit ribosomal RNA gene, partial sequence.   135   8e-28  1
AC025630|AC025630.1 Homo sapiens chromosome 2 clone RP11-383E11 map 2, LOW-PASS SEQUENCE SAMPLING.    82   9e-28  4
AY082986|AY082986.1 Uncultured eukaryote clone RT5iin8 18S ribosomal RNA gene, complete sequence.   133   3e-27  1
dna update 2003.12.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF575814_1(EF575814|pid:none) Oryza sativa (indica cultivar-grou...    33   6.3
protein update 2009. 2.28
PSORT 

 psg: 0.91  gvh: 0.62  alm: 0.46  top: 0.60  tms: 0.00  mit: 0.45  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: mitochondrial
	 20.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for FC-IC0392 is mit
5' end seq. ID FC-IC0392F
5' end seq. 
>FC-IC0392F.Seq
ACCGGAGCGAGTGGCCCACATAACGAGGNTCCTTCACTGGATCGGTAGTTGCTGGGTGGC
GAGCTCCAAACCGCCACAGCCATTGGCTTCTATTGCGAGCAATGGCACNAGTCACCGGAT
GTANCAAGCGCGTAAAAAACCTGTGCTACAAATNAATCGTGGAGCGTGCGCCGACCTTTT
CTAGGTATGCATGCGCTCTCACACCCCAGGCGGCGACAGCANTGNCTGGCCTTTCTAGAC
CNGTCAAANCNACTAGGCCAATGCANTGGGTGACGGAGGAGCAATAAGGAGATCTGTTGG
CAAAGTGCTGATTTACTTTGTGGAGCATGGTTAAAGGCCAGATTTAACTATCTGTCAGCT
AACAATGTAACATTTGATGAATCTTTTTAATTGGTAATAAAAGTGACGGGATCTAATCCT
GTAATTTTGTGACCTCTTCAAAGGGAAACATTAACCAAACAATCAAAACAAAAAATAAGT
TTTGTAATTAATATGTAATAGTGATTAATATCATGATACGTGTTATCTACATGCTTAACT
GGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTA
TAAATTCTTGTNNNNNNNNNN
Length of 5' end seq. 621
3' end seq. ID FC-IC0392Z
3' end seq. 
>FC-IC0392Z.Seq
NNNNNNNNNNACCGAAGCGAGTGGCCCACATAACGAGGTTCNTTCACTGGATCGGTAGTT
GCTGGGTGGCGAGCTCCAAACCGCCACAGCCATTTGCTTTATTGCGAGCAATGGCACGAG
TCACCGGATGTAGCAAGCGCGTAAAAAACCTGTGCTACAAATTAATCGTGGAGCGTGCGC
CGTCCTTTTCTAGGTATGCATGCGCTCTCACACCCCAGGCGGCGACAGCAATGTCGGCTT
TCTAGACGTGTCAAAGCGACTAGGCCAATGCAATAGGTGACGGAGGAGCAATAAGGAGAT
CTGTTGGCAAAGTGCTGATTTACTTTGTGGAGCATGGTTAAAGGCCAGATTTAACTATCT
GTCAGCTANCAATGTAACATTTGATGAATCTTNTTAATTGGTAATAANAGNGNCGGGATC
NAATCNTGTAATTTTGTGACCTCTTCAAAGGGNAACATTAACCTAACNNTCAANNCAANA
AATAAGTTTTGNAATNAATATGNAATAGTGATTAATATCATNATACGTGTNATATTACAN
GCTTACACTGGTTGATCCTGCCAGTAGTCANATGCNTGTCTCAAAGATTAAGCCATGCAN
GTCTAAGTATA
Length of 3' end seq. 611
Connected seq. ID FC-IC0392P
Connected seq. 
>FC-IC0392P.Seq
ACCGGAGCGAGTGGCCCACATAACGAGGNTCCTTCACTGGATCGGTAGTTGCTGGGTGGC
GAGCTCCAAACCGCCACAGCCATTGGCTTCTATTGCGAGCAATGGCACNAGTCACCGGAT
GTANCAAGCGCGTAAAAAACCTGTGCTACAAATNAATCGTGGAGCGTGCGCCGACCTTTT
CTAGGTATGCATGCGCTCTCACACCCCAGGCGGCGACAGCANTGNCTGGCCTTTCTAGAC
CNGTCAAANCNACTAGGCCAATGCANTGGGTGACGGAGGAGCAATAAGGAGATCTGTTGG
CAAAGTGCTGATTTACTTTGTGGAGCATGGTTAAAGGCCAGATTTAACTATCTGTCAGCT
AACAATGTAACATTTGATGAATCTTTTTAATTGGTAATAAAAGTGACGGGATCTAATCCT
GTAATTTTGTGACCTCTTCAAAGGGAAACATTAACCAAACAATCAAAACAAAAAATAAGT
TTTGTAATTAATATGTAATAGTGATTAATATCATGATACGTGTTATCTACATGCTTAACT
GGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTA
TAAATTCTTGT----------ACCGAAGCGAGTGGCCCACATAACGAGGTTCNTTCACTG
GATCGGTAGTTGCTGGGTGGCGAGCTCCAAACCGCCACAGCCATTTGCTTTATTGCGAGC
AATGGCACGAGTCACCGGATGTAGCAAGCGCGTAAAAAACCTGTGCTACAAATTAATCGT
GGAGCGTGCGCCGTCCTTTTCTAGGTATGCATGCGCTCTCACACCCCAGGCGGCGACAGC
AATGTCGGCTTTCTAGACGTGTCAAAGCGACTAGGCCAATGCAATAGGTGACGGAGGAGC
AATAAGGAGATCTGTTGGCAAAGTGCTGATTTACTTTGTGGAGCATGGTTAAAGGCCAGA
TTTAACTATCTGTCAGCTANCAATGTAACATTTGATGAATCTTNTTAATTGGTAATAANA
GNGNCGGGATCNAATCNTGTAATTTTGTGACCTCTTCAAAGGGNAACATTAACCTAACNN
TCAANNCAANAAATAAGTTTTGNAATNAATATGNAATAGTGATTAATATCATNATACGTG
TNATATTACANGCTTACACTGGTTGATCCTGCCAGTAGTCANATGCNTGTCTCAAAGATT
AAGCCATGCANGTCTAAGTATA
Length of connected seq. 1212
Full length Seq ID FC-IC0392E
Full length Seq. 
>FC-IC0392E.Seq
ACCGGAGCGAGTGGCCCACATAACGAGGTTCCTTCACTGGATCGGTAGTTGCTGGGTGGC
GAGCTCCAAACCGCCACAGCCATTTGCTTTATTGCGAGCAATGGCACGAGTCACCGGATG
TAGCAAGCGCGTAAAAAACCTGTGCTACAAATTAATCGTGGAGCGTGCGCCGTCCTTTTC
TAGGTATGCATGCGCTCTCACACCCCAGGCGGCGACAGCAATGTCGGCTTTCTAGACGTG
TCAAAGCGACTAGGCCAATGCAATAGGTGACGGAGGAGCAATAAGGAGATCTGTTGGCAA
AGTGCTGATTTACTTTGTGGAGCATGGTTAAAGGCCAGATTTAACTATCTGTCAGCTAAC
AATGTAACATTTGATGAATCTTTTTAATTGGTAATAAAAGTGACGGGATCTAATCCTGTA
ATTTTGTGACCTCTTCAAAGGGAAACATTAACCAAACAATCAAAACAAAAAATAAGTTTT
GTAATTAATATGTAATAGTGATTAATATCATGATACGTGTTATCTACATGCTTAACTGGT
TGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTATAA
ATTCTTGT
Length of full length seq. 608