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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0374
Library FC-IC
(Link to library)
Clone ID FC-IC0374
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12354-1
Original site URL
Representative seq. ID FC-IC0374E
(Link to Original site)
Representative DNA sequence 
>FC-IC0374 (FC-IC0374Q) /CSM/FC-IC/FC-IC0374Q.Seq.d/
ACCATTAATTGAAAATAGTATTAGTAATAATAATAAAGGATATGGTTGGGATGGAAAGAG
TAAAAGAAATTTAAATAAGAAATCACTTAGATCAGTATTAAGACGTCTTCATTGGTCATA
TGTTTTAGCAATATTTTTATTATTTGGTTTTATTACAATGGGTTTGTGGGTCACTTATTC
AGTTGTTCATGATAATACTCAATCTGGTTATGTTTTGGGTAAAAGTTGTTCAAGATCATT
GGATAGTCGTATCATCAATTATTATATAGCAGAATTGTATACATTTGATAATGATGCAAA
TGAAAATGAAGCATTANNANCNGT
sequence update 2001. 6.30
Translated Amino Acid sequence 
PLIENSISNNNKGYGWDGKSKRNLNKKSLRSVLRRLHWSYVLAIFLLFGFITMGLWVTYS
VVHDNTQSGYVLGKSCSRSLDSRIINYYIAELYTFDNDANENEALXX
Translated Amino Acid sequence (All Frames) 
Frame A:
tin*k*y*****riwlgwke*kkfk*eit*isiktsslvicfsnifiiwfyyngfvghlf
scs**ysiwlcfg*klfkiig*syhqllysrivyi***ck*k*sixxx


Frame B:
PLIENSISNNNKGYGWDGKSKRNLNKKSLRSVLRRLHWSYVLAIFLLFGFITMGLWVTYS
VVHDNTQSGYVLGKSCSRSLDSRIINYYIAELYTFDNDANENEALXX


Frame C:
h*lkivlviiikdmvgmervkei*irnhldqy*dvfighmf*qyfyylvllqwvcgsliq
lfmiilnlvmfwvkvvqdhwivvssiii*qncihlimmqmkmkhxxx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0528 (FC-IC0528Q) /CSM/FC-IC/FC-IC0528Q.Seq.d/                   626   e-179
FC-IC0456 (FC-IC0456Q) /CSM/FC-IC/FC-IC0456Q.Seq.d/                   626   e-179
FC-IC0374 (FC-IC0374Q) /CSM/FC-IC/FC-IC0374Q.Seq.d/                   626   e-179
FC-IC1278 (FC-IC1278Q) /CSM/FC-IC/FC-IC1278Q.Seq.d/                   620   e-177
CHL106 (CHL106Q) /CSM/CH/CHL1-A/CHL106Q.Seq.d/                        607   e-173
VFM132 (VFM132Q) /CSM/VF/VFM1-B/VFM132Q.Seq.d/                        236   2e-61
AHH667 (AHH667Q) /CSM/AH/AHH6-C/AHH667Q.Seq.d/                         54   1e-06
VSJ354 (VSJ354Q) /CSM/VS/VSJ3-C/VSJ354Q.Seq.d/                         46   3e-04
VSA276 (VSA276Q) /CSM/VS/VSA2-D/VSA276Q.Seq.d/                         42   0.005
VHM766 (VHM766Q) /CSM/VH/VHM7-C/VHM766Q.Seq.d/                         42   0.005
own update 2002.10. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    42   8e-09  14
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    40   3e-08  12
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    38   1e-07  8
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40   1e-07  10
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    42   2e-06  10
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    38   3e-06  9
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    38   3e-06  11
AC115606|AC115606.2 Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4, complete sequence.    42   5e-06  6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    38   6e-06  12
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    38   7e-06  9
dna update 2003.12.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB187035_1(AB187035|pid:none) Dictyostelium discoideum tmcB mRNA...   151   6e-36
CT573326_625(CT573326|pid:none) Pseudomonas entomophila str. L48...    33   3.1
CP000462_1168(CP000462|pid:none) Aeromonas hydrophila subsp. hyd...    33   4.0
(Q6FTL7) RecName: Full=Conserved oligomeric Golgi complex subuni...    32   6.9
AL034560_16(AL034560|pid:none) Plasmodium falciparum MAL3P8, com...    32   6.9
AM180355_1191(AM180355|pid:none) Clostridium difficile 630 compl...    32   9.0
BA000026_516(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    32   9.0
CP000527_2224(CP000527|pid:none) Desulfovibrio vulgaris subsp. v...    32   9.0
protein update 2009. 2.28
PSORT 

 psg: 0.75  gvh: 0.53  alm: 0.21  top: 0.20  tms: 0.07  mit: 0.20  mip: 0.13
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.24  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	  8.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for FC-IC0374 is end
5' end seq. ID FC-IC0374F
5' end seq. 
>FC-IC0374F.Seq
ACCATTAATTGAAAATAGTATTAGTAATAATAATAAAGGATATGGTTGGGATGGAAAGAG
TAAAAGAAATTTAAATAAGAAATCACTTAGATCAGTATTAAGACGTCTTCATTGGTCATA
TGTTTTAGCAATATTTTTATTATTTGGTTTTATTACAATGGGTTTGTGGGTCACTTATTC
AGTTGTTCATGATAATACTCAATCTGGTTATGTTTTGGGTAAA----------
Length of 5' end seq. 223
3' end seq. ID FC-IC0374Z
3' end seq. 
>FC-IC0374Z.Seq
----------ACCATTAATTGAAAATAGTATTAGTAATAATAATAAAGGATATGGTTGGG
ATGGAAAGAGTAAAAGAAATTTAAATAAGAAATCACTTAGATCAGTATTAAGACGTCTTC
ATTGGTCATATGTTTTAGCAATATTTTTATTATTTGGTTTTATTACAATGGGTTTGTGGG
TCACTTATTCAGTTGTTCATGATAATACTCAATCTGGTTATGTTTTGGGTAAAAGTTGTT
CAAGATCATTGGATAGTCGTATCATCAATTATTATATAGCAGAATTGTATACATTTGATA
ATGATGCAAATGAAAATGAAGCATTANNANCNGT
Length of 3' end seq. 324
Connected seq. ID FC-IC0374P
Connected seq. 
>FC-IC0374P.Seq
ACCATTAATTGAAAATAGTATTAGTAATAATAATAAAGGATATGGTTGGGATGGAAAGAG
TAAAAGAAATTTAAATAAGAAATCACTTAGATCAGTATTAAGACGTCTTCATTGGTCATA
TGTTTTAGCAATATTTTTATTATTTGGTTTTATTACAATGGGTTTGTGGGTCACTTATTC
AGTTGTTCATGATAATACTCAATCTGGTTATGTTTTGGGTAAA----------ACCATTA
ATTGAAAATAGTATTAGTAATAATAATAAAGGATATGGTTGGGATGGAAAGAGTAAAAGA
AATTTAAATAAGAAATCACTTAGATCAGTATTAAGACGTCTTCATTGGTCATATGTTTTA
GCAATATTTTTATTATTTGGTTTTATTACAATGGGTTTGTGGGTCACTTATTCAGTTGTT
CATGATAATACTCAATCTGGTTATGTTTTGGGTAAAAGTTGTTCAAGATCATTGGATAGT
CGTATCATCAATTATTATATAGCAGAATTGTATACATTTGATAATGATGCAAATGAAAAT
GAAGCATTANNANCNGT
Length of connected seq. 547
Full length Seq ID FC-IC0374E
Full length Seq. 
>FC-IC0374E.Seq
ACCATTAATTGAAAATAGTATTAGTAATAATAATAAAGGATATGGTTGGGATGGAAAGAG
TAAAAGAAATTTAAATAAGAAATCACTTAGATCAGTATTAAGACGTCTTCATTGGTCATA
TGTTTTAGCAATATTTTTATTATTTGGTTTTATTACAATGGGTTTGTGGGTCACTTATTC
AGTTGTTCATGATAATACTCAATCTGGTTATGTTTTGGGTAAAAGTTGTTCAAGATCATT
GGATAGTCGTATCATCAATTATTATATAGCAGAATTGTATACATTTGATAATGATGCAAA
TGAAAATGAAGCATTANNANCNGT
Length of full length seq. 324