FC-IC0369
Library FC-IC
(Link to library)
Clone ID FC-IC0369
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16271-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>FC-IC0369 (FC-IC0369Q) /CSM/FC-IC/FC-IC0369Q.Seq.d/
ACTTCTACCTCACAAATTATAACTGGTAAATGCACTGCTAGTCCATTCAACTTGGCTTCA
AATTGTCAAACCTCTGTCCAAAACTTGGCCACATGTGCTATTGAACATGAATGTCCAGGC
ATTGAAAATATCGAATTAGGTCCAGATTCATGTCTCATGAAACACTGTAGATCTGAAATC
TGTGATAACAATAATTGTATTGTTCAAACAAACACTTGTGGTGATGCACCAGTTTACCCA
GTTTGTAACACCCCATCATCTTCATCTGTTATTTTGCCATCATTTGTCTTATTAATTGTT
GCCATTATTGCTTTATTATTCTAAAAATTTTATTAAAAACAAAGTAAAATTATTTAAAAA
ATCGAATTTTTTTTCTNAAAAAAAAAAAAAAAAAAAAAAAAAGXXXXXXXXXX
sequence update 2001.11. 5
Translated Amino Acid sequence
TSTSQIITGKCTASPFNLASNCQTSVQNLATCAIEHECPGIENIELGPDSCLMKHCRSEI
CDNNNCIVQTNTCGDAPVYPVCNTPSSSSVILPSFVLLIVAIIALLF*kfy*kqskii*k
iefffxkkkkkkkk---


Translated Amino Acid sequence (All Frames)
Frame A:
TSTSQIITGKCTASPFNLASNCQTSVQNLATCAIEHECPGIENIELGPDSCLMKHCRSEI
CDNNNCIVQTNTCGDAPVYPVCNTPSSSSVILPSFVLLIVAIIALLF*kfy*kqskii*k
iefffxkkkkkkkk---


Frame B:
llphkl*lvnallvhstwlqivkplsktwphvllnmnvqalkisn*vqihvs*ntvdlks
vitiivlfkqtlvvmhqftqfvtphhlhllfchhlsy*llplllyysknfiknkvklfkk
snffsxkkkkkkk---


Frame C:
fyltnynw*mhc*siqlgfklsnlcpklghmcy*t*msrh*kyrirsrfmshetl*i*nl
**q*lycsnkhlw*ctslpsl*hpiificyfaiiclincchycfiilkillktk*nylkn
rifflkkkkkkkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-IC0369 (FC-IC0369Q) /CSM/FC-IC/FC-IC0369Q.Seq.d/ 636 0.0
VFI776 (VFI776Q) /CSM/VF/VFI7-D/VFI776Q.Seq.d/ 628 e-179
VFI528 (VFI528Q) /CSM/VF/VFI5-B/VFI528Q.Seq.d/ 628 e-179
SLC529 (SLC529Q) /CSM/SL/SLC5-B/SLC529Q.Seq.d/ 628 e-179
FC-IC1493 (FC-IC1493Q) /CSM/FC-IC/FC-IC1493Q.Seq.d/ 628 e-179
FC-IC1419 (FC-IC1419Q) /CSM/FC-IC/FC-IC1419Q.Seq.d/ 628 e-179
FC-IC0719 (FC-IC0719Q) /CSM/FC-IC/FC-IC0719Q.Seq.d/ 628 e-179
FC-IC0675 (FC-IC0675Q) /CSM/FC-IC/FC-IC0675Q.Seq.d/ 628 e-179
FC-IC0249 (FC-IC0249Q) /CSM/FC-IC/FC-IC0249Q.Seq.d/ 628 e-179
FC-IC0670 (FC-IC0670Q) /CSM/FC-IC/FC-IC0670Q.Seq.d/ 620 e-177

own update 2003.10. 5
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AB079253|AB079253.1 Dictyostelium discoideum Dd-gdcA mRNA, complete cds. 628 e-176 1
AB079606|AB079606.1 Dictyostelium discoideum gene for gp64-like protein, complete cds. 628 e-176 1
AL691435|AL691435.14 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP23-246E11. 48 0.094 1
AC010794|AC010794.8 Homo sapiens chromosome 10 clone RP11-364I18, WORKING DRAFT SEQUENCE, 8 unordered pieces. 30 0.41 8
AF220602|AF220602.1 Lycopersicon pimpinellifolium Rio Grande 76R Pto locus, complete sequence. 34 0.48 6
AZ162557|AZ162557.1 SP_0072_A1_E06_T7A Strongylocentrotus purpuratus, purple sea urchin , sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=72 Col=11 Row=I, DNA sequence. 38 1.2 2
AC137618|AC137618.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0090H02, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces. 38 1.5 3
AC095795|AC095795.7 Rattus norvegicus clone CH230-9F18, *** SEQUENCING IN PROGRESS ***, 22 ordered pieces. 44 1.5 1
AC134747|AC134747.2 Rattus norvegicus clone CH230-354L3, WORKING DRAFT SEQUENCE, 1 ordered piece. 44 1.5 1
AP006138|AP006138.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 1, clone:LjT37A17, TM0240. 30 2.8 2
dna update 2003.12.20
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB079253_1(AB079253|pid:none) Dictyostelium discoideum Dd-gdcA m... 200 1e-50
AL929358_25(AL929358|pid:none) Plasmodium falciparum strain 3D7,... 36 0.46
AC135415_17(AC135415|pid:none) Medicago truncatula clone mth2-10... 32 5.1
BT046512_1(BT046512|pid:none) Salmo salar clone ssal-rgb2-608-31... 32 6.6
AE014296_2190(AE014296|pid:none) Drosophila melanogaster chromos... 32 8.7
BT011026_1(BT011026|pid:none) Drosophila melanogaster RE46519 fu... 32 8.7
CP000413_1508(CP000413|pid:none) Lactobacillus gasseri ATCC 3332... 32 8.7

protein update 2009. 5.21
PSORT

psg: 0.83 gvh: 0.41 alm: 0.11 top: 0.67 tms: 0.07 mit: 0.38 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
16.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: endoplasmic reticulum
8.0 %: plasma membrane
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for FC-IC0369 is cyt

5' end seq. ID FC-IC0369F
5' end seq.
>FC-IC0369F.Seq
ACTTCTACCTCACAAATTATAACTGGTAAATGCACTGCTAGTCCATTCAACTTGGCTTCA
AATTGTCAAACCTCTGTCCAAAACTTGGCCACATGTGCTATTGAACATGAATGTCCAGGC
ATTGAAAATATCGAATTAGGTCCAGATTCATGTCTCATGAAACACTGTAGATCTGAAATC
TGTGATAACAATAATTGTATTGTTCAAACAAACACTTGTGGTGATGCACCAGTTTACCCA
GTTTGTAACACCCCATCATCTTCATCTGTTATTTTGCCATCATTTGTCTTATTAATTGTT
GCCATTATTGCTTTATTATTCTAAAAATTTTATTAAAAACAAAGTAAAATTATTTAAAAA
ATCGAATTTTTTTTCTNAAAAAAAAAAAAAAAAAAAAAAAAAGNNNNNNNNNN
Length of 5' end seq. 413
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -