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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0364
Library FC-IC
(Link to library)
Clone ID FC-IC0364
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01120-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>FC-IC0364 (FC-IC0364Q) /CSM/FC-IC/FC-IC0364Q.Seq.d/
CCATCAGGTTCATCATCTACTAATAGCACAACTACAACTACAACTACAACATCATCATCA
TCATCATCATCAAATACAACAACATCACCAAACAATCTTTTAACATCACCATCAATAGTA
AATACTGGTGTTGGTGGTGGTGGTGTAAATCATAATATGATACAATTACTTGGTGGTAAT
GGTTGTATCACTGGTTTAAGTAGTTGTGGAGCAATAATAAATAATAATGAATGGATTAGT
TTAAATGTTGGTGGTCGTATATTCTCAACTACTAGATCCACAATTATTAGAGATAAAGAT
AGTATGTTGGCAAAGATGTTTAGTGAAAGTTGGGATTCAGCAAAGGATATCAATGGTGCC
TATTTGATTGATAGATCACCCGATTATTTCACACCAATATTAAACTATTTAAGATGTGGT
sequence update 2001. 6.12
Translated Amino Acid sequence 
PSGSSSTNSTTTTTTTTSSSSSSSNTTTSPNNLLTSPSIVNTGVGGGGVNHNMIQLLGGN
GCITGLSSCGAIINNNEWISLNVGGRIFSTTRSTIIRDKDSMLAKMFSESWDSAKDINGA
YLIDRSPDYFTPILNYLRCG
Translated Amino Acid sequence (All Frames) 
Frame A:
PSGSSSTNSTTTTTTTTSSSSSSSNTTTSPNNLLTSPSIVNTGVGGGGVNHNMIQLLGGN
GCITGLSSCGAIINNNEWISLNVGGRIFSTTRSTIIRDKDSMLAKMFSESWDSAKDINGA
YLIDRSPDYFTPILNYLRCG


Frame B:
hqvhhlliaqlqlqlqhhhhhhhqiqqhhqtif*hhhq**ilvlvvvv*iii*ynylvvm
vvslv*vvveq**iimnglv*mlvvvysqlldpqlleikivcwqrclvkvgiqqrismvp
i*lidhpiishqy*ti*dv


Frame C:
irfiiy**hnynynyniiiiiiikynnitkqsfnitinskywcwwwwcks*ydtitww*w
lyhwfk*lwsnnk***md*fkcwwsyilny*ihny*r*r*yvgkdv**klgfskgyqwcl
fd**itrlfhtniklfkmw
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0364 (FC-IC0364Q) /CSM/FC-IC/FC-IC0364Q.Seq.d/                   690   0.0
SLB312 (SLB312Q) /CSM/SL/SLB3-A/SLB312Q.Seq.d/                        410   e-114
VSH819 (VSH819Q) /CSM/VS/VSH8-A/VSH819Q.Seq.d/                         44   0.002
VSF456 (VSF456Q) /CSM/VS/VSF4-C/VSF456Q.Seq.d/                         44   0.002
VHH277 (VHH277Q) /CSM/VH/VHH2-D/VHH277Q.Seq.d/                         44   0.002
VHE826 (VHE826Q) /CSM/VH/VHE8-B/VHE826Q.Seq.d/                         44   0.002
VFM284 (VFM284Q) /CSM/VF/VFM2-D/VFM284Q.Seq.d/                         44   0.002
SSF141 (SSF141Q) /CSM/SS/SSF1-B/SSF141Q.Seq.d/                         44   0.002
SSA735 (SSA735Q) /CSM/SS/SSA7-B/SSA735Q.Seq.d/                         44   0.002
SLC789 (SLC789Q) /CSM/SL/SLC7-D/SLC789Q.Seq.d/                         44   0.002
own update 2002.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    44   7e-10  12
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    44   2e-08  9
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    40   5e-07  11
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    46   5e-07  10
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36   2e-06  12
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    44   2e-06  7
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    44   4e-06  8
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   1e-05  11
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   1e-05  9
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    44   1e-04  10
dna update 2003.12.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC076416_1(BC076416|pid:none) Danio rerio potassium channel tetr...    90   2e-17
CU302301_2(CU302301|pid:none) Zebrafish DNA sequence from clone ...    86   3e-16
BC090472_1(BC090472|pid:none) Danio rerio zgc:113115, mRNA (cDNA...    86   3e-16
(Q80UN1) RecName: Full=BTB/POZ domain-containing protein KCTD9; ...    86   4e-16
AJ720563_1(AJ720563|pid:none) Gallus gallus mRNA for hypothetica...    85   9e-16
AK298518_1(AK298518|pid:none) Homo sapiens cDNA FLJ60779 complet...    84   1e-15
(Q7L273) RecName: Full=BTB/POZ domain-containing protein KCTD9; ...    84   1e-15
BC068518_1(BC068518|pid:none) Homo sapiens potassium channel tet...    84   1e-15
BC126039_1(BC126039|pid:none) Xenopus laevis potassium channel t...    84   2e-15
AY069350_1(AY069350|pid:none) Drosophila melanogaster LD05823 fu...    78   1e-13
protein update 2009. 7. 1
PSORT 

 psg: 0.75  gvh: 0.43  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.15
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for FC-IC0364 is mit
5' end seq. ID FC-IC0364F
5' end seq. 
>FC-IC0364F.Seq
ACCANNAGGNNNATCATCTACTNTTATGCACACACCTCTTTTTCNACGNCCCCNTCCCCA
TTTTNNNCAGGGNNCNGGCCATCCGCNTAAAGCNNGAACTNNNNNNNNNN
Length of 5' end seq. 110
3' end seq. ID FC-IC0364Z
3' end seq. 
>FC-IC0364Z.Seq
----------GTACCATCAGGTTCATCATCTACTAATAGCACAACTACANCTACAACTAC
AACATCATCATCATCATCATCATCAAATACAACAACATCACCAAACAATCTTTTAACATC
ACCATCAATAGTAAATACTGGTGTTGGTGGTGGTGGTGTAAATCATAATATGATACAATT
ACTTGGTGGTAATGGTTGTATCACTGGTTTAAGTAGTTGTGGAGCAATAATAAATAATAA
TGAATGGATTAGTTTAAATGTTGGTGGTCGTATATTCTCAACTACTAGATCCACAATTAT
TAGAGATAAAGATAGTATGTTGGCAAAGATGTTTAGTGAAAGTTGGGATTCAGCAAAGGA
TATCAATGGTGCCTATTTGATTGATAGATCACCCGATTATTTCACACCAATATTAAACTA
TTTAAGATGTGGT
Length of 3' end seq. 423
Connected seq. ID FC-IC0364P
Connected seq. 
>FC-IC0364P.Seq
ACCANNAGGNNNATCATCTACTNTTATGCACACACCTCTTTTTCNACGNCCCCNTCCCCA
TTTTNNNCAGGGNNCNGGCCATCCGCNTAAAGCNNGAACT----------GTACCATCAG
GTTCATCATCTACTAATAGCACAACTACANCTACAACTACAACATCATCATCATCATCAT
CATCAAATACAACAACATCACCAAACAATCTTTTAACATCACCATCAATAGTAAATACTG
GTGTTGGTGGTGGTGGTGTAAATCATAATATGATACAATTACTTGGTGGTAATGGTTGTA
TCACTGGTTTAAGTAGTTGTGGAGCAATAATAAATAATAATGAATGGATTAGTTTAAATG
TTGGTGGTCGTATATTCTCAACTACTAGATCCACAATTATTAGAGATAAAGATAGTATGT
TGGCAAAGATGTTTAGTGAAAGTTGGGATTCAGCAAAGGATATCAATGGTGCCTATTTGA
TTGATAGATCACCCGATTATTTCACACCAATATTAAACTATTTAAGATGTGGT
Length of connected seq. 523
Full length Seq ID FC-IC0364E
Full length Seq. 
>FC-IC0364E.Seq
NCCATCAGGTTCATCATCTACTAATAGCACAACTACAACTACAACTACAACATCATCATC
ATCATCATCATCAAATACAACAACATCACCAAACAATCTTTTAACATCACCATCAATAGT
AAATACTGGTGTTGGTGGTGGTGGTGTAAATCATAATATGATACAATTACTTGGTGGTAA
TGGTTGTATCACTGGTTTAAGTAGTTGTGGAGCAATAATAAATAATAATGAATGGATTAG
TTTAAATGTTGGTGGTCGTATATTCTCAACTACTAGATCCACAATTATTAGAGATAAAGA
TAGTATGTTGGCAAAGATGTTTAGTGAAAGTTGGGATTCAGCAAAGGATATCAATGGTGC
CTATTTGATTGATAGATCACCCGATTATTTCACACCAATATTAAACTATTTAAGATGTGG
T
Length of full length seq. 421