FC-IC0335
Library FC-IC
(Link to library)
Clone ID FC-IC0335
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08330-1
Original site URL
Representative seq. ID FC-IC0335E
(Link to Original site)
Representative DNA sequence
>FC-IC0335 (FC-IC0335Q) /CSM/FC-IC/FC-IC0335Q.Seq.d/
ACACTTATTTTCGATATGTCTGATTTTAGTTCAAAAAATATGGATTATCCATTGGTTAAA
TTTATGGTTGAATTATTTCAAAAGTTTTATCCAGAATCATTACAAAAATGTTTAATTTTA
AATGCACCTTGGATCTTTATGGGAATTTGGCATATCATCAAACATTGGTTAGATCCAAAT
ACCGCTTCAAAAGTTTCTTTTGTCAAAACTAAACAATTGGTTGATTATATTCCAAAAGAT
CAATTAGAAAGTTCTTATGGTGGAACAAGT
sequence update 2001. 6.12
Translated Amino Acid sequence
TLIFDMSDFSSKNMDYPLVKFMVELFQKFYPESLQKCLILNAPWIFMGIWHIIKHWLDPN
TASKVSFVKTKQLVDYIPKDQLESSYGGTS


Translated Amino Acid sequence (All Frames)
Frame A:
TLIFDMSDFSSKNMDYPLVKFMVELFQKFYPESLQKCLILNAPWIFMGIWHIIKHWLDPN
TASKVSFVKTKQLVDYIPKDQLESSYGGTS


Frame B:
hlfsiclilvqkiwiihwlnlwlnyfksfiqnhyknv*f*mhlgslwefgissnig*iqi
plqkfllsklnnwliifqkin*kvlmveq


Frame C:
tyfryv*f*fkkyglsig*iyg*iiskvlsriitkmfnfkctldlygnlayhqtlvrsky
rfksffcqn*tig*lyskrsirkflwwnk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSB584 (SSB584Q) /CSM/SS/SSB5-D/SSB584Q.Seq.d/ 535 e-151
FC-IC0515 (FC-IC0515Q) /CSM/FC-IC/FC-IC0515Q.Seq.d/ 535 e-151
FC-IC0335 (FC-IC0335Q) /CSM/FC-IC/FC-IC0335Q.Seq.d/ 535 e-151
VSD357 (VSD357Q) /CSM/VS/VSD3-C/VSD357Q.Seq.d/ 515 e-145
SSE832 (SSE832Q) /CSM/SS/SSE8-B/SSE832Q.Seq.d/ 496 e-140
SSJ189 (SSJ189Q) /CSM/SS/SSJ1-D/SSJ189Q.Seq.d/ 337 5e-92
VHJ776 (VHJ776Q) /CSM/VH/VHJ7-D/VHJ776Q.Seq.d/ 38 0.065
VHH460 (VHH460Q) /CSM/VH/VHH4-C/VHH460Q.Seq.d/ 38 0.065
VFA774 (VFA774Q) /CSM/VF/VFA7-D/VFA774Q.Seq.d/ 38 0.065
SSM342 (SSM342Q) /CSM/SS/SSM3-B/SSM342Q.Seq.d/ 36 0.26

own update 2004. 8. 6
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117082|AC117082.2 Dictyostelium discoideum chromosome 2 map complement(6807709-6776860) strain AX4, complete sequence. 535 e-149 1
Z83760|Z83760.1 Ciona intestinalis DNA sequence from cosmid COS41. 34 7e-04 5
AC007833|AC007833.2 Homo sapiens clone RP11-33A7, WORKING DRAFT SEQUENCE, 13 unordered pieces. 38 0.002 4
BX005353|BX005353.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 40 0.005 4
BX572090|BX572090.1 Prochlorococcus marinus MED4 complete genome; segment 1/5. 34 0.015 10
AC010673|AC010673.7 Homo sapiens chromosome 15 clone RP11-365F16, WORKING DRAFT SEQUENCE, 10 ordered pieces. 38 0.029 6
AP002512|AP002512.4 Homo sapiens genomic DNA, chromosome 11q clone:CTD-3051L14, complete sequences. 46 0.036 4
BX649460|BX649460.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-286F20. 34 0.043 5
AL049184|AL049184.5 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from MAL13P3. 32 0.046 9
AP000845|AP000845.4 Homo sapiens genomic DNA, chromosome 18p clone:RP11-705O1, complete sequences. 40 0.047 6
dna update 2003.12.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CR382129_199(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 100 2e-20
(Q10138) RecName: Full=CRAL-TRIO domain-containing protein C3H8.... 99 3e-20
CR382125_231(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 98 1e-19
CR382133_199(CR382133|pid:none) Debaryomyces hansenii strain CBS... 97 2e-19
CR382129_654(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 97 2e-19
AM270115_50(AM270115|pid:none) Aspergillus niger contig An06c009... 96 4e-19
CU928174_505(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 94 2e-18
AM920431_638(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 92 4e-18
AM269993_6(AM269993|pid:none) Aspergillus niger contig An01c0470... 91 1e-17
CU928168_586(CU928168|pid:none) Kluyveromyces thermotolerans str... 88 1e-16
protein update 2009. 7. 1
PSORT

psg: 0.75 gvh: 0.32 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
40.0 %: nuclear
12.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for FC-IC0335 is cyt

5' end seq. ID FC-IC0335F
5' end seq.
>FC-IC0335F.Seq
ACACTTATTTTCGATATGTCTGATTTTAGTTCAAAAAATATGGATTATCCATTGGTTAAA
TTTATGGTTGAATTATTTCAAAAGTTTTATCCAGAATCATTACAAAAATGTTTAATTTTA
AATGCACCTTGGATCTTTATGGGAATTTGGCATATCATCAAACATTGGTTAGATCCAAAT
ACCGCTTCAAAAGTTTCTTTTGTCAAAACTAAACAATTGGTTGATTATATTCCAAAAGAT
CAATTAGAAAGTTCTTATGGTGGAACAAGT----------
Length of 5' end seq. 270
3' end seq. ID FC-IC0335Z
3' end seq.
>FC-IC0335Z.Seq
----------ACACTTATTTTCGATATGTCTGATTTTAGTTCAAAAAATATGGATTATCC
ATTGGTTAAATTTATGGTTGAATTATTTCAAAAGTTTTATCCAGAATCATTACAAAAATG
TTTAATTTTAAATGCACCTTGGATCTTTATGGGAATTTGGCATATCATCAAACATTGGTT
AGATCCAAATACCGCTTCAAAAGTTTCTTTTGTCAAAACTAAACAATTGGTTGATTATAT
TCCAAAAGATCAATTAGAAAGTTCTTATGGTGGAACAAGT
Length of 3' end seq. 270
Connected seq. ID FC-IC0335P
Connected seq.
>FC-IC0335P.Seq
ACACTTATTTTCGATATGTCTGATTTTAGTTCAAAAAATATGGATTATCCATTGGTTAAA
TTTATGGTTGAATTATTTCAAAAGTTTTATCCAGAATCATTACAAAAATGTTTAATTTTA
AATGCACCTTGGATCTTTATGGGAATTTGGCATATCATCAAACATTGGTTAGATCCAAAT
ACCGCTTCAAAAGTTTCTTTTGTCAAAACTAAACAATTGGTTGATTATATTCCAAAAGAT
CAATTAGAAAGTTCTTATGGTGGAACAAGT----------ACACTTATTTTCGATATGTC
TGATTTTAGTTCAAAAAATATGGATTATCCATTGGTTAAATTTATGGTTGAATTATTTCA
AAAGTTTTATCCAGAATCATTACAAAAATGTTTAATTTTAAATGCACCTTGGATCTTTAT
GGGAATTTGGCATATCATCAAACATTGGTTAGATCCAAATACCGCTTCAAAAGTTTCTTT
TGTCAAAACTAAACAATTGGTTGATTATATTCCAAAAGATCAATTAGAAAGTTCTTATGG
TGGAACAAGT
Length of connected seq. 540
Full length Seq ID FC-IC0335E
Full length Seq.
>FC-IC0335E.Seq
ACACTTATTTTCGATATGTCTGATTTTAGTTCAAAAAATATGGATTATCCATTGGTTAAA
TTTATGGTTGAATTATTTCAAAAGTTTTATCCAGAATCATTACAAAAATGTTTAATTTTA
AATGCACCTTGGATCTTTATGGGAATTTGGCATATCATCAAACATTGGTTAGATCCAAAT
ACCGCTTCAAAAGTTTCTTTTGTCAAAACTAAACAATTGGTTGATTATATTCCAAAAGAT
CAATTAGAAAGTTCTTATGGTGGAACAAGT
Length of full length seq. 270