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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-IC0309
Library FC-IC
(Link to library)
Clone ID FC-IC0309
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID FC-IC0309E
(Link to Original site)
Representative DNA sequence 
>FC-IC0309 (FC-IC0309Q) /CSM/FC-IC/FC-IC0309Q.Seq.d/
ACCATATTTAATAAGGTAACGAGANTTCAAGTGCTGCACTACTAGCAAATGCCCAACATG
ATCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAATCTACTGTAAGAG
TTGATGTTGGGGCTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTG
GTGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGGTTGGAGCTG
GTGTTGTTGGTTTTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGTGTGGTTGGAGCTG
GTGTAGTTGGAGCTGGGGTTGTTGTTTTTGGAGTATAAGGAAGAACACCCTTAAATCCAC
CTGCTGGGTAATATGAACATGAAACTTCAGATTTATCTGGACATATTGTCTTTGCGCAAC
CATATGAAGT
sequence update 2001. 6.12
Translated Amino Acid sequence 
hi**gnexssaallanaqhdphcp*SLIGVWYEVQSTVRVDVGAGVVGAGVVGFGVVGAG
VVGFGVVGAGVVGFGVVGAGVVGFGVVGAGVVGFGVVGAGVVGAGVVVFGV*grtplnpp
ag*yehetsdlsghivfaqpye
Translated Amino Acid sequence (All Frames) 
Frame A:
tifnkvtrxqvlhy*qmpnmirivldlllefgmksnll*elmlglvllglvllvle*lel
vwlvlewlelvllvlgwlelvllvle*lelvwlvlvwlelv*lelgllfleykeehp*ih
llgnmnmklqiyldilslrnhmk


Frame B:
pylir*rxfkccttskcpt*salslisywslv*spiycks*cwgwccwgwccwfwsswsw
cgwfwsgwswccwfwggwswccwfwsswswcgwfwcgwswcswswgccfwsirkntlkst
cwvi*t*nfrfiwtyclcati*s


Frame C:
hi**gnexssaallanaqhdphcp*SLIGVWYEVQSTVRVDVGAGVVGAGVVGFGVVGAG
VVGFGVVGAGVVGFGVVGAGVVGFGVVGAGVVGFGVVGAGVVGAGVVVFGV*grtplnpp
ag*yehetsdlsghivfaqpye
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-IC0309 (FC-IC0309Q) /CSM/FC-IC/FC-IC0309Q.Seq.d/                   248   6e-65
FC-IC1649 (FC-IC1649Q) /CSM/FC-IC/FC-IC1649Q.Seq.d/                   242   4e-63
FC-IC1624 (FC-IC1624Q) /CSM/FC-IC/FC-IC1624Q.Seq.d/                   242   4e-63
FC-IC1568 (FC-IC1568Q) /CSM/FC-IC/FC-IC1568Q.Seq.d/                   242   4e-63
FC-IC1760 (FC-IC1760Q) /CSM/FC-IC/FC-IC1760Q.Seq.d/                   238   6e-62
FC-IC1748 (FC-IC1748Q) /CSM/FC-IC/FC-IC1748Q.Seq.d/                   238   6e-62
FC-IC1665 (FC-IC1665Q) /CSM/FC-IC/FC-IC1665Q.Seq.d/                   238   6e-62
FC-IC1648 (FC-IC1648Q) /CSM/FC-IC/FC-IC1648Q.Seq.d/                   238   6e-62
FC-IC1642 (FC-IC1642Q) /CSM/FC-IC/FC-IC1642Q.Seq.d/                   238   6e-62
FC-IC1631 (FC-IC1631Q) /CSM/FC-IC/FC-IC1631Q.Seq.d/                   238   6e-62
own update 2002.10. 7
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AB088483|AB088483.1 Dictyostelium discoideum gene for gamete and mating-type specific protein A, complete cds.   218   e-107  4
U28755|U28755.1 Entamoeba invadens cysteine proteinase gene, partial cds.    60   3e-05  1
BH165563|BH165563.1 ENTSB84TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    60   3e-05  1
AZ686636|AZ686636.1 ENTFZ42TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    60   3e-05  1
M94163|M94163.1 Entamoeba histolytica (clone gEh-CPp2) cysteine proteinase (CPp2) gene, complete cds.    60   3e-05  1
AZ535019|AZ535019.1 ENTBP24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    58   1e-04  1
CD451153|CD451153.1 USDA-FP_103216 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-42_H04 5', mRNA sequence.    52   0.006  1
S58670|S58670.1 ACP2=cysteine proteinase [Entamoeba histolytica, HM-1, Genomic/mRNA, 933 nt].    52   0.006  1
BQ474168|BQ474168.1 biphyllus4e07.b Biphyllus lunatus cDNA Biphyllus lunatus cDNA clone biphyllus4e07 5', mRNA sequence.    48   0.098  1
CB402204|CB402204.1 OSTF208E2_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence.    48   0.098  1
dna update 2003.12.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB088483_1(AB088483|pid:none) Dictyostelium discoideum gmsA gene...    75   9e-13
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...    45   6e-04
BC080004_1(BC080004|pid:none) Xenopus laevis MGC81823 protein, m...    45   8e-04
AX497240_1(AX497240|pid:none) Sequence 7 from Patent WO0229058.        44   0.001
(Q5E998) RecName: Full=Cathepsin L2;          EC=3.4.22.43; Flag...    44   0.002
FJ807676_1(FJ807676|pid:none) Dicentrarchus labrax cathepsin L m...    44   0.002
AB017648_1(AB017648|pid:none) Bos taurus gene for preprocathepsi...    44   0.002
BC074718_1(BC074718|pid:none) Xenopus tropicalis MGC69486 protei...    44   0.002
DQ152935_1(DQ152935|pid:none) Ovis aries cathepsin L2 (CTSL2) mR...    44   0.002
(P25975) RecName: Full=Cathepsin L1;          EC=3.4.22.15; Cont...    44   0.002
protein update 2009. 7. 1
PSORT 

 psg: 0.75  gvh: 0.51  alm: 0.25  top: 0.60  tms: 0.20  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 16.0 %: plasma membrane
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for FC-IC0309 is end
5' end seq. ID FC-IC0309F
5' end seq. 
>FC-IC0309F.Seq
ACCATATTTAATAAGGTAACGAGATTCAAGTGCTGCACTACTAGCAAATGCCCAACATGA
TCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAATCTACTGTAAGAGT
TGATGTTGGGGCTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGG
TGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGGCTGGAGCTGG
NNNNNNNNNN
Length of 5' end seq. 250
3' end seq. ID FC-IC0309Z
3' end seq. 
>FC-IC0309Z.Seq
NNNNNNNNNNATTAAAAAAAAAGAAAAAAANCTNTAANTTAGCTATTTTNTTTTAANCNT
TTTGGNTTNTTNCAATGACAGTGATTTTACATTGATAGTAATGTTTAATGTATATATATT
TTTATAATTTTTTAATTATTTTAAATGCCACAACATGAACCNTTTCNTCCACCCATGNTT
CCATTACTNNCNCCGCNACCACCTCTAGATCTAGAACCNCCNGTTAGATTTAAACCGAAG
TCTGTAAACTTNTGNTNANACTTANGCCNAAGCCAAGAATACNATCACTGGCCTCCAGCG
NNNNCCGACCACAGTCTAAGTTGGATTTGGGCCCTGTTGTTGTTNCAGTATNAGAANGAA
GCACCNTTGNATCCTTCNNCCTGGTNTAANATGTTACATATTCNTCNGAATTTATGATGG
AACAGAGTGTCTTTGCGCATACCATANTAAGTAC
Length of 3' end seq. 454
Connected seq. ID FC-IC0309P
Connected seq. 
>FC-IC0309P.Seq
ACCATATTTAATAAGGTAACGAGATTCAAGTGCTGCACTACTAGCAAATGCCCAACATGA
TCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAATCTACTGTAAGAGT
TGATGTTGGGGCTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTGG
TGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGGCTGGAGCTGG
----------ATTAAAAAAAAAGAAAAAAANCTNTAANTTAGCTATTTTNTTTTAANCNT
TTTGGNTTNTTNCAATGACAGTGATTTTACATTGATAGTAATGTTTAATGTATATATATT
TTTATAATTTTTTAATTATTTTAAATGCCACAACATGAACCNTTTCNTCCACCCATGNTT
CCATTACTNNCNCCGCNACCACCTCTAGATCTAGAACCNCCNGTTAGATTTAAACCGAAG
TCTGTAAACTTNTGNTNANACTTANGCCNAAGCCAAGAATACNATCACTGGCCTCCAGCG
NNNNCCGACCACAGTCTAAGTTGGATTTGGGCCCTGTTGTTGTTNCAGTATNAGAANGAA
GCACCNTTGNATCCTTCNNCCTGGTNTAANATGTTACATATTCNTCNGAATTTATGATGG
AACAGAGTGTCTTTGCGCATACCATANTAAGTAC
Length of connected seq. 684
Full length Seq ID FC-IC0309E
Full length Seq. 
>FC-IC0309E.Seq
ACCATATTTAATAAGGTAACGAGANTTCAAGTGCTGCACTACTAGCAAATGCCCAACATG
ATCCGCATTGTCCTTGATCTCTTATTGGAGTTTGGTATGAAGTCCAATCTACTGTAAGAG
TTGATGTTGGGGCTGGTGTTGTTGGGGCTGGTGTTGTTGGTTTTGGAGTAGTTGGAGCTG
GTGTGGTTGGTTTTGGAGTGGTTGGAGCTGGTGTTGTTGGTTTTGGGGTGGTTGGAGCTG
GTGTTGTTGGTTTTGGAGTAGTTGGAGCTGGTGTGGTTGGTTTTGGTGTGGTTGGAGCTG
GTGTAGTTGGAGCTGGGGTTGTTGTTTTTGGAGTATAAGGAAGAACACCCTTAAATCCAC
CTGCTGGGTAATATGAACATGAAACTTCAGATTTATCTGGACATATTGTCTTTGCGCAAC
CATATGAAGT
Length of full length seq. 430